FvH4_6g09240
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001828
Physical Location & Seq
Reverse (-)
5489332 .. 5494063
4732 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09240.t4

Sequence Viewer

Length: 1419 bp
ATGGAAGTGGGGAGGAGGATATCGGCGAGTCCTCGGCCGTGCTCCGGCCGGCGAGTGTTGGCGAAGAAGAAGAGGGCCGCCGGGGATGGGTTCGTCAACAGCGTTAAGAAGCTTCAGAGGCGTGAGATTTCTTCCAAGCGTGATCGAGCTTTTGGGATGAGCAATGCCCAAGAGAGATTCCGCAACATGCACTTGATGGAGGAATATGATACTCATGATCCCAAGGGTCATTCGACCCCCAAATTGCCTTTTTTGTTGAAGAGGACAAAGGTCATTGAGATAGTTGCAGCACGTGACATAGTCTTCGCTCTTGCACACTCTGGTGTATGTGCAGCTTTTAGCAGAGATACAAATCAGAGGATCTGTTTCTTAAATGTTAGTCCTGATGAAGTCATCCGAAGCTTGTTCTATAACAAGAACAATGATTCGCTCATCACAGTTTCAGTCTATGCTTCGGACAACTTCAGCTCTTTGAAATGCAGATCTACAAGGATTGAGTATATAAGGAGGGGCCAGCCAGATGCTGGTTTTGCTCTTTTTGAGTCCGAGTCCTTGAAGTGGCCTGGGTTTGTAGAGTTTGATGATGTTAATGGCAAGGTCTTAACATACTCTGCACAAGATAGTATATATAAGGTGTTTGACCTTAAAAATTATACCATGCTTTACTCTATATCAGACAAAAATGTACAAGAAATCAAGATCAGTCCAGGTATCATGCTACTGATTTACAATAGAGCTAGTAGCCATGTTCCATTGAAGATTCTGTCAATAGAAGACGGCACAGTTCTCAAAGACTTCAATCATCTGCTTCATCGAAACAAGAAGGTGGATTTCATAGAACAATTCAACGAAAAGCTTCTCGTTAAGCAAGAAAATGAGAATCTTCAGATTCTTGATGTGCGAAATGCGGAGCAGATGGAAGTTAACAGAGCCGAGTTCATGACTCCATCAGCATTTATCTTTCTGTATGAGAACCAGCTATTTCTGACATTCAGAAATAGGACTGTAGCTGTCTGGAACTTTCGTGGAGAACTTGTAACTTCATTCGAGGATCACTTGTTGTGGCATCCTGACTGCAATACCAATAACATTTATATAACAAGTGATCAAGATTTGATCATATCGTACTGCAAGGCTGATTCTGATGACCATTGGTCGGAACCAAATGCTGGTTCTATTCATGTGAGCAATATCTTAACCGGAAAGTGCCTAGCCAAAATAAATGCTAGCAATGCCGGTCCCAAGGTTGATGAGTGTAGCAGCAGTTCTAGCACCTCAAGAAAACAGATAAACTCATCTGTGGTGAGGAGCACTGTTGCTGAGGCCTTGGAAGACATAACTGCCCTTTTCTATGATGAAGAGCGCAATGAGATATATACTGGAAACAGGCATGGTCTTGTTCATGTGTGGTCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

473

Amino Acids

53.85

Weight (kDa)

8.02

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 49 - 388 1.8e-196 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 524, 1169
AciI CCGC 3 cut(s) 78, 181, 908
AclWI GGATC 3 cut(s) 212, 368, 1059
AcoI YGGCCR 2 cut(s) 35, 46
AcuI CTGAAG 3 cut(s) 98, 448, 869
AcvI CACGTG 1 cut(s) 293
AfaI GTAC 2 cut(s) 687, 1127
AfiI CCNNNNNNNGG 6 cut(s) 44, 87, 524, 558, 1156, 1169
AgsI TTSAA 6 cut(s) 259, 475, 556, 757, 799, 847
AhdI GACNNNNNGTC 1 cut(s) 1153
AjnI CCWGG 2 cut(s) 562, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 1156, 1188
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 9 cut(s) 112, 149, 335, 402, 468, 737, 856, 979, 1010
AluI AGCT 9 cut(s) 112, 149, 335, 402, 468, 737, 856, 979, 1010
Alw21I GWGCWC 2 cut(s) 44, 1313
AlwI GGATC 3 cut(s) 212, 368, 1059
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 6 cut(s) 35, 46, 75, 511, 560, 1323
ApeKI GCWGC 3 cut(s) 287, 332, 1260
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 1 cut(s) 855
AspLEI GCGC 1 cut(s) 1365
AspS9I GGNCC 3 cut(s) 75, 511, 1238
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 1315
AsuNHI GCTAGC 1 cut(s) 1226
AvaII GGWCC 1 cut(s) 1238
BbrPI CACGTG 1 cut(s) 293
BbsI GAAGAC 3 cut(s) 295, 780, 1338
Bbv12I GWGCWC 2 cut(s) 44, 1313
BbvCI CCTCAGC 1 cut(s) 1320
BbvI GCAGC 3 cut(s) 299, 344, 1272
BccI CCATC 4 cut(s) 80, 190, 910, 955
BceAI ACGGC 2 cut(s) 22, 793
BciT130I CCWGG 2 cut(s) 564, 708
BclI TGATCA 2 cut(s) 1105, 1116
BcnI CCSGG 1 cut(s) 82
BfaI CTAG 4 cut(s) 738, 1211, 1227, 1269
BfmI CTRYAG 1 cut(s) 1005
BglII AGATCT 1 cut(s) 482
BisI GCNGC 4 cut(s) 78, 288, 333, 1261
BlsI GCNGC 4 cut(s) 79, 289, 334, 1262
Bme1390I CCNGG 3 cut(s) 82, 564, 708
Bme18I GGWCC 1 cut(s) 1238
BmeRI GACNNNNNGTC 1 cut(s) 1153
BmgT120I GGNCC 3 cut(s) 75, 511, 1238
BmiI GGNNCC 3 cut(s) 512, 1161, 1240
BmrFI CCNGG 3 cut(s) 82, 564, 708
BmsI GCATC 2 cut(s) 511, 1075
BmtI GCTAGC 1 cut(s) 1230
BoxI GACNNNNGTC 1 cut(s) 269
BpiI GAAGAC 3 cut(s) 295, 780, 1338
Bpu10I CCTNAGC 1 cut(s) 1320
BpuEI CTTGAG 1 cut(s) 1261
BpuMI CCSGG 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 6 cut(s) 32, 81, 222, 563, 1242, 1326
BsaWI WCCGGW 1 cut(s) 1199
BsaXI ACNNNNNCTCC 2 cut(s) 1020, 1050
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 87, 524, 558, 1156, 1169
Bse118I RCCGGY 2 cut(s) 48, 1235
Bse1I ACTGG 1 cut(s) 1384
Bse3DI GCAATG 3 cut(s) 169, 1237, 1372
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 2 cut(s) 564, 708
BseDI CCNNGG 6 cut(s) 32, 81, 222, 563, 1242, 1326
BseGI GGATG 4 cut(s) 91, 162, 393, 1066
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 6 cut(s) 44, 87, 524, 558, 1156, 1169
BseMI GCAATG 3 cut(s) 169, 1237, 1372
BseMII CTCAG 1 cut(s) 1311
BseNI ACTGG 1 cut(s) 1384
BseRI GAGGAG 2 cut(s) 28, 1321
BseX3I CGGCCG 2 cut(s) 35, 46
BseXI GCAGC 3 cut(s) 299, 344, 1272
BsgI GTGCAG 2 cut(s) 351, 597
Bsh1285I CGRYCG 2 cut(s) 38, 49
BshFI GGCC 6 cut(s) 37, 48, 77, 513, 562, 1325
BsiEI CGRYCG 2 cut(s) 38, 49
BsiHKAI GWGCWC 2 cut(s) 44, 1313
BsiSI CCGG 5 cut(s) 45, 49, 81, 1200, 1236
BslFI GGGAC 1 cut(s) 1224
BslI CCNNNNNNNGG 6 cut(s) 44, 87, 524, 558, 1156, 1169
BsmFI GGGAC 1 cut(s) 1224
BsnI GGCC 6 cut(s) 37, 48, 77, 513, 562, 1325
Bsp1286I GDGCHC 2 cut(s) 44, 1313
Bsp1407I TGTACA 1 cut(s) 685
Bsp143I GATC 8 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116
BspACI CCGC 3 cut(s) 78, 181, 908
BspANI GGCC 6 cut(s) 37, 48, 77, 513, 562, 1325
BspCNI CTCAG 1 cut(s) 1312
BspHI TCATGA 2 cut(s) 214, 939
BspLI GGNNCC 3 cut(s) 512, 1161, 1240
BspOI GCTAGC 1 cut(s) 1230
BspPI GGATC 3 cut(s) 212, 368, 1059
BspQI GCTCTTC 1 cut(s) 1353
BsrDI GCAATG 3 cut(s) 169, 1237, 1372
BsrFI RCCGGY 2 cut(s) 48, 1235
BsrGI TGTACA 1 cut(s) 685
BsrI ACTGG 1 cut(s) 1384
BssAI RCCGGY 2 cut(s) 48, 1235
BssECI CCNNGG 6 cut(s) 32, 81, 222, 563, 1242, 1326
BssMI GATC 8 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116
BssT1I CCWWGG 3 cut(s) 222, 1242, 1326
Bst2UI CCWGG 2 cut(s) 564, 708
Bst4CI ACNGT 4 cut(s) 439, 784, 1006, 1315
Bst6I CTCTTC 3 cut(s) 65, 254, 1353
BstAUI TGTACA 1 cut(s) 685
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 3 cut(s) 50, 515, 1228
BstDEI CTNAG 1 cut(s) 1320
BstF5I GGATG 4 cut(s) 91, 162, 393, 1066
BstHHI GCGC 1 cut(s) 1365
BstKTI GATC 8 cut(s) 145, 220, 363, 485, 702, 1054, 1108, 1119
BstMBI GATC 8 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116
BstMCI CGRYCG 2 cut(s) 38, 49
BstMWI GCNNNNNNNGC 4 cut(s) 118, 530, 1232, 1269
BstNI CCWGG 2 cut(s) 564, 708
BstNSI RCATGY 1 cut(s) 190
BstPAI GACNNNNGTC 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 80, 562, 706
BstSFI CTRYAG 1 cut(s) 1005
BstV1I GCAGC 3 cut(s) 299, 344, 1272
BstV2I GAAGAC 3 cut(s) 295, 780, 1338
BstX2I RGATCY 2 cut(s) 360, 482
BstYI RGATCY 2 cut(s) 360, 482
BstZI CGGCCG 2 cut(s) 35, 46
BsuRI GGCC 6 cut(s) 37, 48, 77, 513, 562, 1325
BtsCI GGATG 4 cut(s) 91, 162, 393, 1066
BtsIMutI CAGTG 1 cut(s) 1311
Cac8I GCNNGC 3 cut(s) 50, 515, 1228
CaiI CAGNNNCTG 1 cut(s) 524
CciI TCATGA 2 cut(s) 214, 939
CfoI GCGC 1 cut(s) 1365
Cfr10I RCCGGY 2 cut(s) 48, 1235
Cfr13I GGNCC 3 cut(s) 75, 511, 1238
Csp6I GTAC 2 cut(s) 686, 1126
CviAII CATG 9 cut(s) 187, 215, 658, 715, 746, 940, 1181, 1391, 1403
CviQI GTAC 2 cut(s) 686, 1126
DdeI CTNAG 1 cut(s) 1320
DpnI GATC 8 cut(s) 144, 219, 362, 484, 701, 1053, 1107, 1118
DpnII GATC 8 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116
DriI GACNNNNNGTC 1 cut(s) 1153
EaeI YGGCCR 2 cut(s) 35, 46
EagI CGGCCG 2 cut(s) 35, 46
Eam1104I CTCTTC 3 cut(s) 65, 254, 1353
Eam1105I GACNNNNNGTC 1 cut(s) 1153
EarI CTCTTC 3 cut(s) 65, 254, 1353
EclXI CGGCCG 2 cut(s) 35, 46
Eco130I CCWWGG 3 cut(s) 222, 1242, 1326
Eco147I AGGCCT 1 cut(s) 1325
Eco32I GATATC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 1238
Eco52I CGGCCG 2 cut(s) 35, 46
Eco57I CTGAAG 3 cut(s) 98, 448, 869
Eco72I CACGTG 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 562, 706
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 3 cut(s) 222, 1242, 1326
ErhI CCWWGG 3 cut(s) 222, 1242, 1326
FaeI CATG 9 cut(s) 190, 218, 661, 718, 749, 943, 1184, 1394, 1406
FaqI GGGAC 1 cut(s) 1224
FatI CATG 9 cut(s) 186, 214, 657, 714, 745, 939, 1180, 1390, 1402
FbaI TGATCA 2 cut(s) 1105, 1116
Fnu4HI GCNGC 4 cut(s) 78, 288, 333, 1261
FokI GGATG 4 cut(s) 98, 169, 380, 1053
Fsp4HI GCNGC 4 cut(s) 78, 288, 333, 1261
FspBI CTAG 4 cut(s) 738, 1211, 1227, 1269
GlaI GCGC 1 cut(s) 1364
GluI GCNGC 4 cut(s) 78, 288, 333, 1261
HaeIII GGCC 6 cut(s) 37, 48, 77, 513, 562, 1325
HapII CCGG 5 cut(s) 45, 49, 81, 1200, 1236
HhaI GCGC 1 cut(s) 1365
Hin1II CATG 9 cut(s) 190, 218, 661, 718, 749, 943, 1184, 1394, 1406
Hin6I GCGC 1 cut(s) 1363
HinP1I GCGC 1 cut(s) 1363
HincII GTYRAC 2 cut(s) 97, 925
HindII GTYRAC 2 cut(s) 97, 925
HindIII AAGCTT 3 cut(s) 110, 400, 854
HpaI GTTAAC 1 cut(s) 925
HpaII CCGG 5 cut(s) 45, 49, 81, 1200, 1236
HphI GGTGA 1 cut(s) 1315
Hpy166II GTNNAC 2 cut(s) 97, 925
Hpy188III TCNNGA 9 cut(s) 215, 383, 697, 893, 940, 1015, 1070, 1109, 1278
Hpy8I GTNNAC 2 cut(s) 97, 925
HpyAV CCTTC 1 cut(s) 817
HpyCH4III ACNGT 4 cut(s) 439, 784, 1006, 1315
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 8 cut(s) 190, 287, 314, 332, 480, 614, 1077, 1131
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 530, 1232, 1269
HpyF3I CTNAG 1 cut(s) 1320
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 9 cut(s) 190, 218, 661, 718, 749, 943, 1184, 1394, 1406
HspAI GCGC 1 cut(s) 1363
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
Ksp22I TGATCA 2 cut(s) 1105, 1116
KspAI GTTAAC 1 cut(s) 925
Kzo9I GATC 8 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116
LguI GCTCTTC 1 cut(s) 1353
LmnI GCTCC 3 cut(s) 47, 910, 1308
Lsp1109I GCAGC 3 cut(s) 299, 344, 1272
LweI GCATC 2 cut(s) 511, 1075
MaeI CTAG 4 cut(s) 738, 1211, 1227, 1269
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 293, 1036
MalI GATC 8 cut(s) 144, 219, 362, 484, 701, 1053, 1107, 1118
MboI GATC 8 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116
MflI RGATCY 2 cut(s) 360, 482
MhlI GDGCHC 2 cut(s) 44, 1313
MluCI AATT 3 cut(s) 242, 649, 842
MlyI GAGTC 4 cut(s) 37, 551, 557, 937
MmeI TCCRAC 1 cut(s) 1137
MroNI GCCGGC 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 8 cut(s) 105, 371, 588, 602, 645, 864, 924, 1196
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 5 cut(s) 45, 49, 81, 1200, 1236
MspR9I CCNGG 3 cut(s) 82, 564, 708
MvaI CCWGG 2 cut(s) 564, 708
MwoI GCNNNNNNNGC 4 cut(s) 118, 530, 1232, 1269
NaeI GCCGGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 82
NdeII GATC 8 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116
NgoMIV GCCGGC 1 cut(s) 48
NheI GCTAGC 1 cut(s) 1226
NlaIII CATG 9 cut(s) 190, 218, 661, 718, 749, 943, 1184, 1394, 1406
NlaIV GGNNCC 3 cut(s) 512, 1161, 1240
NmeAIII GCCGAG 2 cut(s) 13, 958
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 321
PagI TCATGA 2 cut(s) 214, 939
PceI AGGCCT 1 cut(s) 1325
PciSI GCTCTTC 1 cut(s) 1353
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 6 cut(s) 177, 425, 760, 880, 889, 1139
PflFI GACNNNGTC 1 cut(s) 299
PflMI CCANNNNNTGG 2 cut(s) 524, 1169
PkrI GCNGC 4 cut(s) 79, 289, 334, 1262
PleI GAGTC 4 cut(s) 36, 550, 556, 937
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
PpsI GAGTC 4 cut(s) 36, 550, 556, 937
Ppu21I YACGTR 1 cut(s) 293
PshAI GACNNNNGTC 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 562, 706
PspCI CACGTG 1 cut(s) 293
PspGI CCWGG 2 cut(s) 562, 706
PspN4I GGNNCC 3 cut(s) 512, 1161, 1240
PspPI GGNCC 3 cut(s) 75, 511, 1238
PsrI GAACNNNNNNTAC 2 cut(s) 1249, 1281
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 2 cut(s) 360, 482
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 2 cut(s) 687, 1127
RsaNI GTAC 2 cut(s) 686, 1126
RseI CAYNNNNRTG 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 1353
SaqAI TTAA 8 cut(s) 105, 371, 588, 602, 645, 864, 924, 1196
SatI GCNGC 4 cut(s) 78, 288, 333, 1261
Sau3AI GATC 8 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116
Sau96I GGNCC 3 cut(s) 75, 511, 1238
SchI GAGTC 4 cut(s) 37, 551, 557, 937
ScrFI CCNGG 3 cut(s) 82, 564, 708
SduI GDGCHC 2 cut(s) 44, 1313
SfaNI GCATC 2 cut(s) 511, 1075
SfcI CTRYAG 1 cut(s) 1005
SinI GGWCC 1 cut(s) 1238
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 1276
SmoI CTYRAG 1 cut(s) 1276
Sse9I AATT 3 cut(s) 242, 649, 842
SseBI AGGCCT 1 cut(s) 1325
SsiI CCGC 3 cut(s) 78, 181, 908
SspMI CTAG 4 cut(s) 738, 1211, 1227, 1269
StuI AGGCCT 1 cut(s) 1325
StyD4I CCNGG 3 cut(s) 80, 562, 706
StyI CCWWGG 3 cut(s) 222, 1242, 1326
TaaI ACNGT 4 cut(s) 439, 784, 1006, 1315
TaiI ACGT 1 cut(s) 295
TaqI TCGA 4 cut(s) 145, 233, 814, 1047
TasI AATT 3 cut(s) 242, 649, 842
TatI WGTACW 1 cut(s) 685
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 6 cut(s) 177, 425, 760, 880, 889, 1139
Tru1I TTAA 8 cut(s) 105, 371, 588, 602, 645, 864, 924, 1196
Tru9I TTAA 8 cut(s) 105, 371, 588, 602, 645, 864, 924, 1196
TscAI CASTG 1 cut(s) 1318
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 3 cut(s) 287, 332, 1260
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 8 cut(s) 402, 800, 823, 928, 1032, 1169, 1371, 1391
TspRI CASTG 1 cut(s) 1318
Tth111I GACNNNGTC 1 cut(s) 299
Van91I CCANNNNNTGG 2 cut(s) 524, 1169
VpaK11BI GGWCC 1 cut(s) 1238
XceI RCATGY 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 4 cut(s) 738, 1211, 1227, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.