Rh1DG378000
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001828
Physical Location & Seq
Forward (+)
60012969 .. 60017012
4044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG378000.1

Sequence Viewer

Length: 1194 bp
ATGGTTCTGCCTTTTCTGCGAAAGAGGTCGAAAATTATTGAAATTGTAGCAGCACGTGACATTGTGTTTGCTCTTGCGCAGTCTGGTGTTTGTGCAGCGTTTAGCCGAGAAACCAATCAGAGGATATGCTTTCTGAATGTCAGTCCCGATGAAGTTATAAGAAGCTTGTTTTATAATAAAAACAATGACTCACTTATAACAGTTTCAGTTTATGCTTCAGACAATTTCAGTTCTTTGAAATGTAGAAGCACGAGGATTGAATACATACGAAGGGGTAAACCAGATGCTGGCTTTGCTCTTTTTGAGTCTGAGTCACTAAAGTGGCCTGGATTTGTAGAGTTCGATGATGTAAATGGGAAGGTTCTCACTTACTCTGCACAAGATAGTATATACAAGGTGTTTGATCTTAAAAACTATACAATGTTGTACTCCATATCAGATAAACATGTCCAAGAAATTAAGATTAGTCCGGGGATCATGTTGTTAATTTTCAATAAAGCTAGTAGCCATGTTCCTCTCAAGATTCTTTCTATAGAGGATGGTAGTGTTCTCAAATCCTTCAACCATCTACTTCATCGGAATAAGAAGGTAGATTTCATTGAACAGTTCAATGAAAAGCTTCTTGTAAAACAAGAAAATGAGAACCTCCAGATTCTTGACGTTCGCAATTCTGAGATGACAGAAGTTAGCAAAAGTGAATTCATGACACCATCGGCTTTTATATTTCTGTACGAGAATCAGTTATTTTTAACGTTTCGTAATCGTACTGTGGCTGTTTGGAACTTTCGAGGGGAACTTGTGACTTCGTTTGAGGATCATCTTTTGTGGCATCCCGACTGCAATACTAATAACATATATATTACTAGTGACCAGGATCTTATTATTTCTTACTGCAAGGCTGATTCTGATGATCCATTAGCTGAAGGAAATGCAGGATCCATCAATATCAGCAATATTTTGACAGGTAAATGCCTTGCTAAAATAAAAGCCAGCAAGAATGTGGAAAATGAATGCAGTTGTAGTGGTGACTGTTGTGGAAGCAGTTGCAGTTCCAAGAAGCGTACCCAGTCATCGAGAATTAGAAGTACAGTCGCAGAAGCCTTGGAAGATATTACTGCTCTCTTCTACGATGAAGAGCGCAACGAGATCTATACCGGCAATAGGCTCGGTCTAGTTCATGTATGGTCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

45.08

Weight (kDa)

6.05

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 2 - 395 2.8e-215 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 158, 174, 197
Acc16I TGCGCA 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 287
AclI AACGTT 1 cut(s) 752
AclWI GGATC 6 cut(s) 482, 822, 882, 905, 930, 943
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 2 cut(s) 201, 942
AcvI CACGTG 1 cut(s) 56
AfaI GTAC 5 cut(s) 428, 731, 766, 1063, 1087
AfiI CCNNNNNNNGG 3 cut(s) 120, 287, 1161
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 7 cut(s) 41, 238, 260, 493, 562, 602, 610
AhlI ACTAGT 1 cut(s) 863
AjnI CCWGG 2 cut(s) 325, 870
AleI CACNNNNGTG 1 cut(s) 319
AluBI AGCT 4 cut(s) 165, 500, 619, 920
AluI AGCT 4 cut(s) 165, 500, 619, 920
AlwI GGATC 6 cut(s) 482, 822, 882, 905, 930, 943
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 50, 95
ApoI RAATTY 1 cut(s) 698
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp700I GAANNNNTTC 1 cut(s) 618
AspLEI GCGC 2 cut(s) 79, 1140
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 1 cut(s) 1037
BamHI GGATCC 1 cut(s) 935
BauI CACGAG 1 cut(s) 250
BbrPI CACGTG 1 cut(s) 56
BbvI GCAGC 2 cut(s) 62, 107
BccI CCATC 4 cut(s) 533, 573, 718, 947
BcgI CGANNNNNNTGC 2 cut(s) 1147, 1181
BciT130I CCWGG 2 cut(s) 327, 872
BcnI CCSGG 1 cut(s) 471
BcuI ACTAGT 1 cut(s) 863
BfaI CTAG 3 cut(s) 501, 864, 1172
BfmI CTRYAG 1 cut(s) 531
BglII AGATCT 1 cut(s) 1146
BisI GCNGC 2 cut(s) 51, 96
BlsI GCNGC 2 cut(s) 52, 97
Bme1390I CCNGG 3 cut(s) 327, 471, 872
BmiI GGNNCC 1 cut(s) 937
BmrFI CCNGG 3 cut(s) 327, 471, 872
BmrI ACTGGG 1 cut(s) 1060
BmsI GCATC 2 cut(s) 274, 838
BmuI ACTGGG 1 cut(s) 1060
BpmI CTGGAG 1 cut(s) 632
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 470, 1101
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 287, 1161
Bse118I RCCGGY 1 cut(s) 1154
Bse1I ACTGG 1 cut(s) 1066
BseBI CCWGG 2 cut(s) 327, 872
BseDI CCNNGG 2 cut(s) 470, 1101
BseGI GGATG 2 cut(s) 544, 829
BseLI CCNNNNNNNGG 3 cut(s) 120, 287, 1161
BseMII CTCAG 2 cut(s) 300, 663
BseNI ACTGG 1 cut(s) 1066
BseXI GCAGC 2 cut(s) 62, 107
BsgI GTGCAG 2 cut(s) 114, 360
BshFI GGCC 1 cut(s) 325
BsiSI CCGG 2 cut(s) 470, 1155
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 3 cut(s) 120, 287, 1161
BsmFI GGGAC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 1016
BsnI GGCC 1 cut(s) 325
Bsp143I GATC 7 cut(s) 403, 474, 814, 874, 910, 935, 1146
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 2 cut(s) 301, 664
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 1 cut(s) 937
BspPI GGATC 6 cut(s) 482, 822, 882, 905, 930, 943
BspQI GCTCTTC 1 cut(s) 1128
BsrFI RCCGGY 1 cut(s) 1154
BsrI ACTGG 1 cut(s) 1066
BssAI RCCGGY 1 cut(s) 1154
BssECI CCNNGG 2 cut(s) 470, 1101
BssMI GATC 7 cut(s) 403, 474, 814, 874, 910, 935, 1146
BssSI CACGAG 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 1101
Bst2BI CACGAG 1 cut(s) 250
Bst2UI CCWGG 2 cut(s) 327, 872
Bst4CI ACNGT 5 cut(s) 202, 606, 769, 1031, 1090
Bst6I CTCTTC 2 cut(s) 1127, 1128
BstBAI YACGTR 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 289, 991
BstDEI CTNAG 2 cut(s) 309, 672
BstF5I GGATG 2 cut(s) 544, 829
BstHHI GCGC 2 cut(s) 79, 1140
BstKTI GATC 7 cut(s) 406, 477, 817, 877, 913, 938, 1149
BstMBI GATC 7 cut(s) 403, 474, 814, 874, 910, 935, 1146
BstMWI GCNNNNNNNGC 2 cut(s) 16, 293
BstNI CCWGG 2 cut(s) 327, 872
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 325, 469, 870
BstSFI CTRYAG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 62, 107
BstX2I RGATCY 3 cut(s) 874, 935, 1146
BstYI RGATCY 3 cut(s) 874, 935, 1146
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 544, 829
Cac8I GCNNGC 2 cut(s) 289, 991
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 702
CfoI GCGC 2 cut(s) 79, 1140
Cfr10I RCCGGY 1 cut(s) 1154
Csp6I GTAC 5 cut(s) 427, 730, 765, 1062, 1086
CviAII CATG 5 cut(s) 446, 478, 509, 703, 1178
CviQI GTAC 5 cut(s) 427, 730, 765, 1062, 1086
DdeI CTNAG 2 cut(s) 309, 672
DpnI GATC 7 cut(s) 405, 476, 816, 876, 912, 937, 1148
DpnII GATC 7 cut(s) 403, 474, 814, 874, 910, 935, 1146
Eam1104I CTCTTC 2 cut(s) 1127, 1128
EarI CTCTTC 2 cut(s) 1127, 1128
Eco130I CCWWGG 1 cut(s) 1101
Eco57I CTGAAG 2 cut(s) 201, 942
Eco72I CACGTG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 698
EcoRII CCWGG 2 cut(s) 325, 870
EcoT14I CCWWGG 1 cut(s) 1101
ErhI CCWWGG 1 cut(s) 1101
FaeI CATG 5 cut(s) 449, 481, 512, 706, 1181
FaqI GGGAC 1 cut(s) 129
FatI CATG 5 cut(s) 445, 477, 508, 702, 1177
Fnu4HI GCNGC 2 cut(s) 51, 96
FokI GGATG 2 cut(s) 551, 816
Fsp4HI GCNGC 2 cut(s) 51, 96
FspBI CTAG 3 cut(s) 501, 864, 1172
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 2 cut(s) 78, 1139
GluI GCNGC 2 cut(s) 51, 96
GsuI CTGGAG 1 cut(s) 632
HaeIII GGCC 1 cut(s) 325
HapII CCGG 2 cut(s) 470, 1155
HhaI GCGC 2 cut(s) 79, 1140
Hin1II CATG 5 cut(s) 449, 481, 512, 706, 1181
Hin6I GCGC 2 cut(s) 77, 1138
HinP1I GCGC 2 cut(s) 77, 1138
HindIII AAGCTT 2 cut(s) 163, 617
HinfI GANTC 7 cut(s) 188, 305, 311, 523, 652, 736, 902
HpaII CCGG 2 cut(s) 470, 1155
HphI GGTGA 1 cut(s) 1037
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 8 cut(s) 120, 135, 220, 310, 439, 579, 673, 907
Hpy188III TCNNGA 7 cut(s) 146, 520, 649, 656, 703, 833, 1074
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 5 cut(s) 264, 352, 568, 580, 917
HpyCH4III ACNGT 5 cut(s) 202, 606, 769, 1031, 1090
HpyCH4IV ACGT 3 cut(s) 55, 660, 752
HpyCH4V TGCA 7 cut(s) 95, 377, 840, 894, 932, 1014, 1047
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 293
HpyF3I CTNAG 2 cut(s) 309, 672
HpySE526I ACGT 3 cut(s) 55, 660, 752
Hsp92II CATG 5 cut(s) 449, 481, 512, 706, 1181
HspAI GCGC 2 cut(s) 77, 1138
Kzo9I GATC 7 cut(s) 403, 474, 814, 874, 910, 935, 1146
LguI GCTCTTC 1 cut(s) 1128
Lsp1109I GCAGC 2 cut(s) 62, 107
LweI GCATC 2 cut(s) 274, 838
MaeI CTAG 3 cut(s) 501, 864, 1172
MaeII ACGT 3 cut(s) 55, 660, 752
MaeIII GTNAC 5 cut(s) 56, 312, 799, 866, 1025
MalI GATC 7 cut(s) 405, 476, 816, 876, 912, 937, 1148
MboI GATC 7 cut(s) 403, 474, 814, 874, 910, 935, 1146
MboII GAAGA 3 cut(s) 1114, 1118, 1145
MflI RGATCY 3 cut(s) 874, 935, 1146
MluCI AATT 9 cut(s) 33, 42, 223, 456, 486, 667, 698, 1077, 1189
MlyI GAGTC 3 cut(s) 182, 314, 320
MnlI CCTC 8 cut(s) 18, 114, 246, 525, 529, 656, 782, 805
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 5 cut(s) 408, 459, 485, 749, 1192
MslI CAYNNNNRTG 1 cut(s) 319
MspI CCGG 2 cut(s) 470, 1155
MspR9I CCNGG 3 cut(s) 327, 471, 872
Mva1269I GAATGC 1 cut(s) 1016
MvaI CCWGG 2 cut(s) 327, 872
MwoI GCNNNNNNNGC 2 cut(s) 16, 293
NciI CCSGG 1 cut(s) 471
NdeII GATC 7 cut(s) 403, 474, 814, 874, 910, 935, 1146
NlaIII CATG 5 cut(s) 449, 481, 512, 706, 1181
NlaIV GGNNCC 1 cut(s) 937
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 5 cut(s) 56, 312, 799, 866, 1025
NsbI TGCGCA 1 cut(s) 78
NspI RCATGY 1 cut(s) 449
OliI CACNNNNGTG 1 cut(s) 319
PagI TCATGA 1 cut(s) 702
PciI ACATGT 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 1128
PctI GAATGC 1 cut(s) 1016
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 4 cut(s) 523, 652, 736, 902
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 2 cut(s) 52, 97
PleI GAGTC 3 cut(s) 182, 313, 319
PmaCI CACGTG 1 cut(s) 56
PmlI CACGTG 1 cut(s) 56
PpsI GAGTC 3 cut(s) 182, 313, 319
Ppu21I YACGTR 1 cut(s) 56
PscI ACATGT 1 cut(s) 445
PsiI TTATAA 3 cut(s) 158, 174, 197
Psp1406I AACGTT 1 cut(s) 752
Psp6I CCWGG 2 cut(s) 325, 870
PspCI CACGTG 1 cut(s) 56
PspGI CCWGG 2 cut(s) 325, 870
PspN4I GGNNCC 1 cut(s) 937
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 3 cut(s) 874, 935, 1146
RsaI GTAC 5 cut(s) 428, 731, 766, 1063, 1087
RsaNI GTAC 5 cut(s) 427, 730, 765, 1062, 1086
RseI CAYNNNNRTG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 1128
SaqAI TTAA 5 cut(s) 408, 459, 485, 749, 1192
SatI GCNGC 2 cut(s) 51, 96
Sau3AI GATC 7 cut(s) 403, 474, 814, 874, 910, 935, 1146
SchI GAGTC 3 cut(s) 182, 314, 320
ScrFI CCNGG 3 cut(s) 327, 471, 872
SfaNI GCATC 2 cut(s) 274, 838
SfcI CTRYAG 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SpeI ACTAGT 1 cut(s) 863
Sse9I AATT 9 cut(s) 33, 42, 223, 456, 486, 667, 698, 1077, 1189
SspI AATATT 1 cut(s) 955
SspMI CTAG 3 cut(s) 501, 864, 1172
StyD4I CCNGG 3 cut(s) 325, 469, 870
StyI CCWWGG 1 cut(s) 1101
TaaI ACNGT 5 cut(s) 202, 606, 769, 1031, 1090
TaiI ACGT 3 cut(s) 58, 663, 755
TaqI TCGA 4 cut(s) 29, 342, 787, 1073
TaqII GACCGA 1 cut(s) 1157
TasI AATT 9 cut(s) 33, 42, 223, 456, 486, 667, 698, 1077, 1189
TatI WGTACW 2 cut(s) 426, 1085
TfiI GAWTC 4 cut(s) 523, 652, 736, 902
Tru1I TTAA 5 cut(s) 408, 459, 485, 749, 1192
Tru9I TTAA 5 cut(s) 408, 459, 485, 749, 1192
TseFI GTSAC 5 cut(s) 56, 312, 799, 866, 1025
TseI GCWGC 2 cut(s) 50, 95
Tsp45I GTSAC 5 cut(s) 56, 312, 799, 866, 1025
TspDTI ATGAA 8 cut(s) 165, 563, 586, 627, 691, 1023, 1146, 1166
Van91I CCANNNNNTGG 1 cut(s) 287
XapI RAATTY 1 cut(s) 698
XceI RCATGY 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 997
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 3 cut(s) 501, 864, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.