Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001828

Physical Location & Seq

Genomic Coordinates Forward (+)

20361815 .. 20364847

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18100.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGTGGGAAGGAGAATATCGGCAAGTCCTCGTCCGTGCTCCGTCCGGCGAGTGGTGGCGAAGAAGAGGGGTGGCTCCGATGGGTTTGTAAACAGCGTGAAGAAGCTTCAGAGGCGTGAGATTTCTTCGAAGCGTGATCGAGCTTTTGGGATGAGCAATTCCCAGGAGAGGTTCCGCAACATGCACCTCGTGGAGGAATATGATACTCATGACCCCAAGGGACATTCTTCGGCCATATTGCCTTTTCTGATGAAAAGGACAAAGGTCATTGAGATAGTTGCCGCACGTGACATCGTCTTTGCTCTCGCACACTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGAAAAACGAGAGGATTTGTTTTATGAATGTTAGTCCTGATGAAGTCATTCGGAGCTTGTTCTATAATAAGAACAACGATTCGCTCATCACAGTTTCAGTTTATGCTTCAGACAACTTCAGCTCTTTGAAATGCAGATCCACAAGGATTGAATATATAAGGAGGGGACAGCCAGAAGCTGGCTTTGCTCTTTTCGAGTCCGAGTCTTTGAAGTGGCCTGGGTTTGTAGAGTTTGATGATGTTAATGGCAAGGTGCTGACATACTCAGCACAGGATAGTATATACAAGGTGTTTGACCTTAAAAACTATACCATGCTGTACTCTATATCAGACAAACATGTACAAGAAATCAAAATCAGTCCAGGCATCATGCTGTTGATTTATAACAGAGCTACTAGCCATGTTCCTCTGAAGATTCTATCAATAGAAGATGGCACGGTTCTCAAAGACTTCAATCATCTACTTCATAGAAATAAGAAGGTGGACTTCATAGAACAGTTCAATGAAAAGCTTCTTGTCAAGCAAGAAAATGAGAACCTTCAGATTCTGGATGTTCGAAATGCTGAGATGATGGAAGTTAGCAGAACAGACTTCATAACTCCATCAGCATTTATCTTTCTGTATGAGAACCAGTTATTCCTGACGTTCAGAAATCGATTGGTGTCTGTGTGGAACTTTCGTGGAGAACTTGTAACTGCGTTTGAGGATCGATCCCCCGAACTTGTTATGGCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

41.4

Weight (kDa)

9.11

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38630 AT2G38630 AT2G38630 AT3G54190
fragaria_vesca	FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_7g26350 FvH4_7g26350 FvH4_7g26350 FvH4_7g26350
malus_domestica	MD01G1172600.v1.1 MD04G1179700.v1.1 MD07G1238900.v1.1 MD12G1194800.v1.1
prunus_persica	Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.6G299700_v2.0.a1 Prupe.6G299700_v2.0.a1
pyrus_communis	pycom01g18410 pycom04g15870 pycom07g21490 pycom12g18100
rosa_chinensis	RchiOBHm_Chr1g0372891 RchiOBHm_Chr3g0459581
rosa_laevigata	RLG00000025078 RLG00000026868
rosa_multiflora	Rmu_sc0000240.1_g000010 Rmu_sc0006531.1_g000003 Rmu_sc0011206.1_g000004 Rmu_sc0034641.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284650 Rroxscaffold_6G00420170
rosa_rugosa	Rorug01G0374600 Rorug01G0374700 Rorug03G0036500
rosa_samantha	Rh1CG360500 Rh1DG378000 Rh3AG095400 Rh3CG099700
rosa_wichuraiana	Rw0G013860 Rw0G017570 Rw1G033760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	726
Acc16I	TGCGCA	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	521
AciI	CCGC	2 cut(s)	178, 285
AclWI	GGATC	3 cut(s)	474, 1047, 1056
AcoI	YGGCCR	1 cut(s)	234
AcuI	CTGAAG	5 cut(s)	95, 435, 445, 773, 866
AcvI	CACGTG	1 cut(s)	290
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	2 cut(s)	662, 684
AfiI	CCNNNNNNNGG	4 cut(s)	55, 171, 196, 521
AflIII	ACRYGT	1 cut(s)	679
AgsI	TTSAA	5 cut(s)	472, 494, 553, 796, 844
AjnI	CCWGG	3 cut(s)	165, 559, 703
AleI	CACNNNNGTG	1 cut(s)	318
AluBI	AGCT	8 cut(s)	109, 146, 332, 399, 465, 521, 734, 853
AluI	AGCT	8 cut(s)	109, 146, 332, 399, 465, 521, 734, 853
Alw21I	GWGCWC	1 cut(s)	44
AlwI	GGATC	3 cut(s)	474, 1047, 1056
AlwNI	CAGNNNCTG	2 cut(s)	521, 889
AoxI	GGCC	2 cut(s)	234, 557
ApeKI	GCWGC	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
Asp700I	GAANNNNTTC	2 cut(s)	390, 852
AspLEI	GCGC	1 cut(s)	329
AsuII	TTCGAA	2 cut(s)	131, 898
BauI	CACGAG	1 cut(s)	191
BbrPI	CACGTG	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	4 cut(s)	77, 767, 907, 952
BciT130I	CCWGG	3 cut(s)	167, 561, 705
BfaI	CTAG	1 cut(s)	738
BisI	GCNGC	2 cut(s)	285, 330
BlsI	GCNGC	2 cut(s)	286, 331
Bme1390I	CCNGG	3 cut(s)	167, 561, 705
BmiI	GGNNCC	2 cut(s)	79, 176
BmrFI	CCNGG	3 cut(s)	167, 561, 705
BmsI	GCATC	1 cut(s)	717
BoxI	GACNNNNGTC	1 cut(s)	266
Bpu14I	TTCGAA	2 cut(s)	131, 898
Bsa29I	ATCGAT	2 cut(s)	997, 1051
BsaAI	YACGTR	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	165, 219, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	1017, 1047
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 171, 196, 521
Bse1I	ACTGG	1 cut(s)	973
BseBI	CCWGG	3 cut(s)	167, 561, 705
BseCI	ATCGAT	2 cut(s)	997, 1051
BseDI	CCNNGG	3 cut(s)	165, 219, 560
BseGI	GGATG	3 cut(s)	159, 898, 1073
BseLI	CCNNNNNNNGG	4 cut(s)	55, 171, 196, 521
BseMII	CTCAG	2 cut(s)	621, 897
BseNI	ACTGG	1 cut(s)	973
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	2 cut(s)	236, 559
BshVI	ATCGAT	2 cut(s)	997, 1051
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	2 cut(s)	237, 522
BslI	CCNNNNNNNGG	4 cut(s)	55, 171, 196, 521
BsmFI	GGGAC	2 cut(s)	237, 522
BsnI	GGCC	2 cut(s)	236, 559
Bsp119I	TTCGAA	2 cut(s)	131, 898
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	682
Bsp143I	GATC	4 cut(s)	139, 479, 1048, 1052
BspACI	CCGC	2 cut(s)	178, 285
BspANI	GGCC	2 cut(s)	236, 559
BspCNI	CTCAG	2 cut(s)	620, 898
BspDI	ATCGAT	2 cut(s)	997, 1051
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	79, 176
BspPI	GGATC	3 cut(s)	474, 1047, 1056
BspT104I	TTCGAA	2 cut(s)	131, 898
BsrGI	TGTACA	1 cut(s)	682
BsrI	ACTGG	1 cut(s)	973
BssECI	CCNNGG	3 cut(s)	165, 219, 560
BssMI	GATC	4 cut(s)	139, 479, 1048, 1052
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	3 cut(s)	167, 561, 705
Bst4CI	ACNGT	3 cut(s)	436, 781, 840
Bst6I	CTCTTC	1 cut(s)	62
BstAUI	TGTACA	1 cut(s)	682
BstBAI	YACGTR	1 cut(s)	290
BstBI	TTCGAA	2 cut(s)	131, 898
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	607, 906
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	3 cut(s)	159, 898, 1073
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	4 cut(s)	142, 482, 1051, 1055
BstMBI	GATC	4 cut(s)	139, 479, 1048, 1052
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 527
BstNI	CCWGG	3 cut(s)	167, 561, 705
BstNSI	RCATGY	2 cut(s)	187, 683
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	3 cut(s)	165, 559, 703
BstV1I	GCAGC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
Bsu15I	ATCGAT	2 cut(s)	997, 1051
BsuRI	GGCC	2 cut(s)	236, 559
BsuTUI	ATCGAT	2 cut(s)	997, 1051
BtsCI	GGATG	3 cut(s)	159, 898, 1073
Cac8I	GCNNGC	1 cut(s)	523
CaiI	CAGNNNCTG	2 cut(s)	521, 889
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	329
ClaI	ATCGAT	2 cut(s)	997, 1051
Csp6I	GTAC	2 cut(s)	661, 683
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	6 cut(s)	184, 212, 655, 680, 712, 743
CviQI	GTAC	2 cut(s)	661, 683
DdeI	CTNAG	2 cut(s)	607, 906
DpnI	GATC	4 cut(s)	141, 481, 1050, 1054
DpnII	GATC	4 cut(s)	139, 479, 1048, 1052
DraIII	CACNNNGTG	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	219
Eco57I	CTGAAG	5 cut(s)	95, 435, 445, 773, 866
Eco72I	CACGTG	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRII	CCWGG	3 cut(s)	165, 559, 703
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	6 cut(s)	187, 215, 658, 683, 715, 746
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	2 cut(s)	237, 522
FatI	CATG	6 cut(s)	183, 211, 654, 679, 711, 742
Fnu4HI	GCNGC	2 cut(s)	285, 330
FokI	GGATG	3 cut(s)	166, 905, 1060
Fsp4HI	GCNGC	2 cut(s)	285, 330
FspBI	CTAG	1 cut(s)	738
FspI	TGCGCA	1 cut(s)	328
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	285, 330
HaeIII	GGCC	2 cut(s)	236, 559
HapII	CCGG	1 cut(s)	49
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	6 cut(s)	187, 215, 658, 683, 715, 746
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HindIII	AAGCTT	2 cut(s)	107, 851
HinfI	GANTC	5 cut(s)	422, 539, 545, 757, 886
HpaII	CCGG	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	94, 826
Hpy188III	TCNNGA	5 cut(s)	212, 380, 890, 982, 1077
Hpy8I	GTNNAC	2 cut(s)	94, 826
HpyAV	CCTTC	3 cut(s)	6, 814, 890
HpyCH4III	ACNGT	3 cut(s)	436, 781, 840
HpyCH4IV	ACGT	2 cut(s)	289, 986
HpyCH4V	TGCA	2 cut(s)	187, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 527
HpyF3I	CTNAG	2 cut(s)	607, 906
HpySE526I	ACGT	2 cut(s)	289, 986
Hsp92II	CATG	6 cut(s)	187, 215, 658, 683, 715, 746
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	139, 479, 1048, 1052
LmnI	GCTCC	3 cut(s)	47, 83, 396
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	2 cut(s)	289, 986
MaeIII	GTNAC	2 cut(s)	290, 1033
MalI	GATC	4 cut(s)	141, 481, 1050, 1054
MboI	GATC	4 cut(s)	139, 479, 1048, 1052
MboII	GAAGA	7 cut(s)	76, 79, 115, 120, 222, 766, 782
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	2 cut(s)	548, 554
MroXI	GAANNNNTTC	2 cut(s)	390, 852
MseI	TTAA	2 cut(s)	585, 642
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	3 cut(s)	167, 561, 705
MvaI	CCWGG	3 cut(s)	167, 561, 705
MwoI	GCNNNNNNNGC	2 cut(s)	115, 527
NdeII	GATC	4 cut(s)	139, 479, 1048, 1052
NlaIII	CATG	6 cut(s)	187, 215, 658, 683, 715, 746
NlaIV	GGNNCC	2 cut(s)	79, 176
NmuCI	GTSAC	1 cut(s)	290
NsbI	TGCGCA	1 cut(s)	328
NspI	RCATGY	2 cut(s)	187, 683
NspV	TTCGAA	2 cut(s)	131, 898
OliI	CACNNNNGTG	1 cut(s)	318
PagI	TCATGA	1 cut(s)	211
PciI	ACATGT	1 cut(s)	679
PdmI	GAANNNNTTC	2 cut(s)	390, 852
PfeI	GAWTC	3 cut(s)	422, 757, 886
PflFI	GACNNNGTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	2 cut(s)	286, 331
PleI	GAGTC	2 cut(s)	547, 553
PmaCI	CACGTG	1 cut(s)	290
PmlI	CACGTG	1 cut(s)	290
PpsI	GAGTC	2 cut(s)	547, 553
Ppu21I	YACGTR	1 cut(s)	290
PscI	ACATGT	1 cut(s)	679
PshAI	GACNNNNGTC	1 cut(s)	266
PsiI	TTATAA	1 cut(s)	726
Psp6I	CCWGG	3 cut(s)	165, 559, 703
PspCI	CACGTG	1 cut(s)	290
PspGI	CCWGG	3 cut(s)	165, 559, 703
PspN4I	GGNNCC	2 cut(s)	79, 176
PstNI	CAGNNNCTG	2 cut(s)	521, 889
PsuI	RGATCY	1 cut(s)	479
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	662, 684
RsaNI	GTAC	2 cut(s)	661, 683
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	585, 642
SatI	GCNGC	2 cut(s)	285, 330
Sau3AI	GATC	4 cut(s)	139, 479, 1048, 1052
SchI	GAGTC	2 cut(s)	548, 554
ScrFI	CCNGG	3 cut(s)	167, 561, 705
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	1 cut(s)	717
SfuI	TTCGAA	2 cut(s)	131, 898
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	178, 285
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	3 cut(s)	165, 559, 703
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	436, 781, 840
TaiI	ACGT	2 cut(s)	292, 989
TaqI	TCGA	6 cut(s)	131, 142, 537, 898, 997, 1051
TasI	AATT	1 cut(s)	160
TatI	WGTACW	2 cut(s)	660, 682
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	3 cut(s)	422, 757, 886
Tru1I	TTAA	2 cut(s)	585, 642
Tru9I	TTAA	2 cut(s)	585, 642
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	7 cut(s)	269, 383, 399, 797, 820, 861, 925
TspGWI	ACGGA	2 cut(s)	27, 34
Tth111I	GACNNNGTC	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	521
XagI	CCTNNNNNAGG	1 cut(s)	194
XceI	RCATGY	2 cut(s)	187, 683
XmnI	GAANNNNTTC	2 cut(s)	390, 852
XspI	CTAG	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.