RLG00000026868
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001828
Physical Location & Seq
Reverse (-)
6618054 .. 6622105
4052 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026868

Sequence Viewer

Length: 1275 bp
ATGGAAGGGGGGAGGAGGATATCGGCGAGTCCGCGACCGTGTAGTGGCCGGAGGGTGGTGGCGGCGAGGAAACGACCCCGTATTGGCGGCGTGGACGGGTTCGTCAACAGCGTTAAGAAGCTTCAGCGACGCGAAATCAGCTCCAAGCGTGACCGGGCTTTCACTATGAGCGATGCCCAGGAGAGGTTTCGGAATATTCGTCTCCAGGAGGAATATGATACCCATGATCCAAAAGGTCATTGTGCCATGGTTCTGCCTTTTCTGCGAAAGAGGTCAAAAATTATTGAAATTGTAGCAGCACGTGACATTGTGTTTGCTCTTGCGCAGTCTGGTGTTTGTGCAGCGTTTAGCCGAGAAACCAATCAGAGGATATGCTTTCTGAATGTCAGTCCCGACGAAGTTATAAGAAGCTTGTTTTATAATAAAAACAATGACTCACTTATCACAGTTTCAGTTTATGCTTCAGACAATTTCAGTTCTTTGAAATGTAGAAGCACGAGGATTGAATACATACGAAGGGGTAAACCAGATGCTGGCTTTGCTCTTTTTGAGTCTGAGTCACTAAAGTGGCCTGGATTTGTAGAGTTCGATGATGTAAATGGGAAGGTTCTCACTTACTCTGCACAAGATAGTATATACAAGGTGTTTGATCTTAAAAACTATACAATGTTGTACTCCATATCAGATAAACATGTCCAAGAAATTAAGATTAGTCCGGGGATCATGTTGTTAATTTTCAATAAAGCTAGTAGCCATGTTCCTCTCAAGATTCTTTCTATAGAGGATGGTAGTGTTCTCAAATCCTTCAACCATCTACTTCATCGGAATAAGAAGGTAGATTTCATTGAACAGTTCAATGAAAAGCTTCTTGTAAAACAAGAAAATGAGAACCTCCAGATTCTTGACGTTCGCAATTCTGAGATGACAGAAGTTAGCAAAAGTGAATTCATGACACCATCGGCTTTTATATTTCTGTATGAGAATCAGTTATTTTTAACGTTTCGTAATCGTACTGTGGCTGTTTGGAACTTTCGAGGGGAACTTGTGACTTCGTTTGAGGATCATCTTTTGTGGCATCCCGACTGCAATACTAATAACATATATATTACTAGTGACCAGGATCTTATTATTTCTTACTGCAAGGCTGATTCTGATGATCCATTAGCTGAAGGAAATGGTAATTTTGGCTTGTACCTATACAGGATGATCACCTTTTGTAGTTATACATCATGGACATTCTTCTCCAAGAACTATATGCAAGTTGGTTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

48.87

Weight (kDa)

8.85

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 52 - 390 6.1e-198 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 404, 420
AasI GACNNNNNNGTC 1 cut(s) 101
Acc16I TGCGCA 1 cut(s) 324
AccB7I CCANNNNNTGG 1 cut(s) 533
AccII CGCG 2 cut(s) 34, 132
AciI CCGC 3 cut(s) 32, 62, 87
AclI AACGTT 1 cut(s) 998
AclWI GGATC 5 cut(s) 221, 728, 1068, 1128, 1151
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 944
AcuI CTGAAG 3 cut(s) 107, 447, 1188
AcvI CACGTG 1 cut(s) 302
AfaI GTAC 3 cut(s) 674, 1012, 1193
AfiI CCNNNNNNNGG 6 cut(s) 44, 55, 83, 183, 366, 533
AflIII ACRYGT 1 cut(s) 691
AgsI TTSAA 7 cut(s) 287, 484, 506, 739, 808, 848, 856
AhlI ACTAGT 1 cut(s) 1109
AjnI CCWGG 4 cut(s) 177, 204, 571, 1116
AleI CACNNNNGTG 1 cut(s) 565
AluBI AGCT 6 cut(s) 121, 141, 411, 746, 865, 1166
AluI AGCT 6 cut(s) 121, 141, 411, 746, 865, 1166
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 5 cut(s) 221, 728, 1068, 1128, 1151
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 2 cut(s) 46, 569
ApeKI GCWGC 2 cut(s) 296, 341
ApoI RAATTY 1 cut(s) 944
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 1 cut(s) 325
AsuC2I CCSGG 2 cut(s) 155, 717
AsuHPI GGTGA 1 cut(s) 1201
BauI CACGAG 1 cut(s) 496
BbrPI CACGTG 1 cut(s) 302
BbvI GCAGC 2 cut(s) 308, 353
BccI CCATC 3 cut(s) 779, 819, 964
BciT130I CCWGG 4 cut(s) 179, 206, 573, 1118
BclI TGATCA 1 cut(s) 1206
BcnI CCSGG 2 cut(s) 155, 717
BcoDI GTCTC 1 cut(s) 206
BcuI ACTAGT 1 cut(s) 1109
BfaI CTAG 2 cut(s) 747, 1110
BfmI CTRYAG 1 cut(s) 777
BisI GCNGC 4 cut(s) 63, 88, 297, 342
BlsI GCNGC 4 cut(s) 64, 89, 298, 343
Bme1390I CCNGG 6 cut(s) 155, 179, 206, 573, 717, 1118
BmrFI CCNGG 6 cut(s) 155, 179, 206, 573, 717, 1118
BmsI GCATC 3 cut(s) 163, 520, 1084
BpmI CTGGAG 2 cut(s) 188, 878
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 2 cut(s) 155, 717
BsaAI YACGTR 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 177, 246, 716
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 55, 83, 183, 366, 533
BseBI CCWGG 4 cut(s) 179, 206, 573, 1118
BseDI CCNNGG 3 cut(s) 177, 246, 716
BseGI GGATG 3 cut(s) 790, 1075, 1209
BseLI CCNNNNNNNGG 6 cut(s) 44, 55, 83, 183, 366, 533
BseMII CTCAG 2 cut(s) 546, 909
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 308, 353
BsgI GTGCAG 2 cut(s) 360, 606
Bsh1236I CGCG 2 cut(s) 34, 132
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 48, 571
BsiEI CGRYCG 1 cut(s) 38
BsiSI CCGG 3 cut(s) 49, 154, 716
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 6 cut(s) 44, 55, 83, 183, 366, 533
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 2 cut(s) 48, 571
Bsp143I GATC 7 cut(s) 226, 649, 720, 1060, 1120, 1156, 1206
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 3 cut(s) 32, 62, 87
BspANI GGCC 2 cut(s) 48, 571
BspCNI CTCAG 2 cut(s) 547, 910
BspFNI CGCG 2 cut(s) 34, 132
BspHI TCATGA 1 cut(s) 948
BspPI GGATC 5 cut(s) 221, 728, 1068, 1128, 1151
BssECI CCNNGG 3 cut(s) 177, 246, 716
BssMI GATC 7 cut(s) 226, 649, 720, 1060, 1120, 1156, 1206
BssSI CACGAG 1 cut(s) 496
BssT1I CCWWGG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 496
Bst2UI CCWGG 4 cut(s) 179, 206, 573, 1118
Bst4CI ACNGT 4 cut(s) 39, 448, 852, 1015
BstBAI YACGTR 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 2 cut(s) 555, 918
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 790, 1075, 1209
BstFNI CGCG 2 cut(s) 34, 132
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 7 cut(s) 229, 652, 723, 1063, 1123, 1159, 1209
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 7 cut(s) 226, 649, 720, 1060, 1120, 1156, 1206
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 3 cut(s) 138, 262, 539
BstNI CCWGG 4 cut(s) 179, 206, 573, 1118
BstNSI RCATGY 1 cut(s) 695
BstSCI CCNGG 6 cut(s) 153, 177, 204, 571, 715, 1116
BstSFI CTRYAG 1 cut(s) 777
BstUI CGCG 2 cut(s) 34, 132
BstV1I GCAGC 2 cut(s) 308, 353
BstX2I RGATCY 1 cut(s) 1120
BstYI RGATCY 1 cut(s) 1120
BsuRI GGCC 2 cut(s) 48, 571
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 3 cut(s) 790, 1075, 1209
Cac8I GCNNGC 1 cut(s) 535
CaiI CAGNNNCTG 1 cut(s) 533
CciI TCATGA 1 cut(s) 948
CfoI GCGC 1 cut(s) 325
CseI GACGC 1 cut(s) 138
Csp6I GTAC 3 cut(s) 673, 1011, 1192
CviAII CATG 7 cut(s) 224, 247, 692, 724, 755, 949, 1230
CviQI GTAC 3 cut(s) 673, 1011, 1192
DdeI CTNAG 2 cut(s) 555, 918
DpnI GATC 7 cut(s) 228, 651, 722, 1062, 1122, 1158, 1208
DpnII GATC 7 cut(s) 226, 649, 720, 1060, 1120, 1156, 1206
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 246
Eco32I GATATC 1 cut(s) 21
Eco57I CTGAAG 3 cut(s) 107, 447, 1188
Eco72I CACGTG 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 4 cut(s) 177, 204, 571, 1116
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 7 cut(s) 227, 250, 695, 727, 758, 952, 1233
FaqI GGGAC 1 cut(s) 375
FatI CATG 7 cut(s) 223, 246, 691, 723, 754, 948, 1229
FbaI TGATCA 1 cut(s) 1206
Fnu4HI GCNGC 4 cut(s) 63, 88, 297, 342
FokI GGATG 3 cut(s) 797, 1062, 1216
Fsp4HI GCNGC 4 cut(s) 63, 88, 297, 342
FspBI CTAG 2 cut(s) 747, 1110
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 1 cut(s) 324
GluI GCNGC 4 cut(s) 63, 88, 297, 342
GsuI CTGGAG 2 cut(s) 188, 878
HaeIII GGCC 2 cut(s) 48, 571
HapII CCGG 3 cut(s) 49, 154, 716
HgaI GACGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 325
Hin1II CATG 7 cut(s) 227, 250, 695, 727, 758, 952, 1233
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 3 cut(s) 119, 409, 863
HinfI GANTC 8 cut(s) 28, 434, 551, 557, 769, 898, 982, 1148
HpaII CCGG 3 cut(s) 49, 154, 716
HphI GGTGA 1 cut(s) 1201
Hpy166II GTNNAC 3 cut(s) 94, 106, 524
Hpy188I TCNGA 9 cut(s) 192, 366, 381, 466, 556, 685, 825, 919, 1153
Hpy188III TCNNGA 6 cut(s) 392, 766, 895, 902, 949, 1079
Hpy8I GTNNAC 3 cut(s) 94, 106, 524
Hpy99I CGWCG 2 cut(s) 132, 398
HpyAV CCTTC 5 cut(s) 510, 598, 814, 826, 1163
HpyCH4III ACNGT 4 cut(s) 39, 448, 852, 1015
HpyCH4IV ACGT 3 cut(s) 301, 906, 998
HpyCH4V TGCA 5 cut(s) 341, 623, 1086, 1140, 1258
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 262, 539
HpyF3I CTNAG 2 cut(s) 555, 918
HpySE526I ACGT 3 cut(s) 301, 906, 998
Hsp92II CATG 7 cut(s) 227, 250, 695, 727, 758, 952, 1233
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 1206
Kzo9I GATC 7 cut(s) 226, 649, 720, 1060, 1120, 1156, 1206
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 2 cut(s) 308, 353
LweI GCATC 3 cut(s) 163, 520, 1084
MaeI CTAG 2 cut(s) 747, 1110
MaeII ACGT 3 cut(s) 301, 906, 998
MaeIII GTNAC 5 cut(s) 149, 302, 558, 1045, 1112
MalI GATC 7 cut(s) 228, 651, 722, 1062, 1122, 1158, 1208
MboI GATC 7 cut(s) 226, 649, 720, 1060, 1120, 1156, 1206
MboII GAAGA 1 cut(s) 1231
MflI RGATCY 1 cut(s) 1120
MluCI AATT 8 cut(s) 279, 288, 469, 702, 732, 913, 944, 1180
MlyI GAGTC 4 cut(s) 37, 428, 560, 566
MroXI GAANNNNTTC 1 cut(s) 864
MseI TTAA 5 cut(s) 114, 654, 705, 731, 995
MslI CAYNNNNRTG 1 cut(s) 565
MspI CCGG 3 cut(s) 49, 154, 716
MspR9I CCNGG 6 cut(s) 155, 179, 206, 573, 717, 1118
MvaI CCWGG 4 cut(s) 179, 206, 573, 1118
MvnI CGCG 2 cut(s) 34, 132
MwoI GCNNNNNNNGC 3 cut(s) 138, 262, 539
NciI CCSGG 2 cut(s) 155, 717
NcoI CCATGG 1 cut(s) 246
NdeII GATC 7 cut(s) 226, 649, 720, 1060, 1120, 1156, 1206
NlaIII CATG 7 cut(s) 227, 250, 695, 727, 758, 952, 1233
NmeAIII GCCGAG 1 cut(s) 377
NmuCI GTSAC 5 cut(s) 149, 302, 558, 1045, 1112
NsbI TGCGCA 1 cut(s) 324
NspI RCATGY 1 cut(s) 695
OliI CACNNNNGTG 1 cut(s) 565
PagI TCATGA 1 cut(s) 948
PciI ACATGT 1 cut(s) 691
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 196
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 4 cut(s) 769, 898, 982, 1148
PflMI CCANNNNNTGG 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 204
PkrI GCNGC 4 cut(s) 64, 89, 298, 343
PleI GAGTC 4 cut(s) 36, 428, 559, 565
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
PpsI GAGTC 4 cut(s) 36, 428, 559, 565
Ppu21I YACGTR 1 cut(s) 302
PscI ACATGT 1 cut(s) 691
PsiI TTATAA 2 cut(s) 404, 420
Psp1406I AACGTT 1 cut(s) 998
Psp6I CCWGG 4 cut(s) 177, 204, 571, 1116
PspCI CACGTG 1 cut(s) 302
PspGI CCWGG 4 cut(s) 177, 204, 571, 1116
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 1 cut(s) 1120
RsaI GTAC 3 cut(s) 674, 1012, 1193
RsaNI GTAC 3 cut(s) 673, 1011, 1192
RseI CAYNNNNRTG 1 cut(s) 565
SaqAI TTAA 5 cut(s) 114, 654, 705, 731, 995
SatI GCNGC 4 cut(s) 63, 88, 297, 342
Sau3AI GATC 7 cut(s) 226, 649, 720, 1060, 1120, 1156, 1206
SchI GAGTC 4 cut(s) 37, 428, 560, 566
ScrFI CCNGG 6 cut(s) 155, 179, 206, 573, 717, 1118
SfaNI GCATC 3 cut(s) 163, 520, 1084
SfcI CTRYAG 1 cut(s) 777
SmiMI CAYNNNNRTG 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
SpeI ACTAGT 1 cut(s) 1109
Sse9I AATT 8 cut(s) 279, 288, 469, 702, 732, 913, 944, 1180
SsiI CCGC 3 cut(s) 32, 62, 87
SspI AATATT 1 cut(s) 196
SspMI CTAG 2 cut(s) 747, 1110
StyD4I CCNGG 6 cut(s) 153, 177, 204, 571, 715, 1116
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 4 cut(s) 39, 448, 852, 1015
TaiI ACGT 3 cut(s) 304, 909, 1001
TaqI TCGA 2 cut(s) 588, 1033
TasI AATT 8 cut(s) 279, 288, 469, 702, 732, 913, 944, 1180
TatI WGTACW 1 cut(s) 672
TauI GCSGC 2 cut(s) 65, 90
TfiI GAWTC 4 cut(s) 769, 898, 982, 1148
Tru1I TTAA 5 cut(s) 114, 654, 705, 731, 995
Tru9I TTAA 5 cut(s) 114, 654, 705, 731, 995
TseFI GTSAC 5 cut(s) 149, 302, 558, 1045, 1112
TseI GCWGC 2 cut(s) 296, 341
Tsp45I GTSAC 5 cut(s) 149, 302, 558, 1045, 1112
TspDTI ATGAA 4 cut(s) 809, 832, 873, 937
Van91I CCANNNNNTGG 1 cut(s) 533
XapI RAATTY 1 cut(s) 944
XceI RCATGY 1 cut(s) 695
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 2 cut(s) 747, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.