Rw1G033760
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001828
Physical Location & Seq
Forward (+)
61747621 .. 61751336
3716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033760.1

Sequence Viewer

Length: 1440 bp
ATGGAAGGGGGGAGGAGGATATCGGCGAGTCCGCGGCCGTGTAGTGGCCGGAGGGTGGTGGCGGCGAGAAAGCGACCCCGTATTGGCGGCGTGGACGGGTTCGTCAACAGCGTTAAGAAGCTTCAGCGACGTGAAATCAGCTCCAAGCGTGACCGGGCTTTCACTATGAGCGATGCCCAGGAGAGGTTTCGGAATATTCGTCTCCAGGAGGAATATGATACCCATGATCCAAAAGGTCATTGTGCTATGGTTCTGCCTTTTCTGCGAAAGAGGTCGAAAATTATTGAAATTGTAGCAGCACGTGACATTGTGTTTGCTCTTGCGCAGTCTGGTGTTTGTGCAGCGTTTAGCCGAGAAACCAATCAGAGGATATGCTTTCTGAATGTCAGTCCCGATGAAGTTATAAGAAGCTTGTTTTATAATAAAAACAATGACTCACTTATCACAGTTTCAGTTTATGCTTCAGACAATTTCAGTTCTTTGAAATGTAGAAGCACGAGGATTGAATACATACGAAGGGGTAAACCAGATGCTGGCTTTGCTCTTTTTGAGTCTGAGTCACTAAAGTGGCCTGGATTTGTAGAGTTTGATGATGTAAATGGGAAGGTTCTCACTTACTCTGCACAAGATAGTATATACAAGGTGTTTGATCTTAAAAACTATACAATGTTGTACTCCATATCAGATAAACATGTCCAAGAAATTAAGATTAGTCCGGGGATCATGTTGTTAATTTTCAATAAAGCTAGTAGCCATGTTCCTCTCAAGATTCTTTCTATAGAGGATGGTAGTGTTCTCAAATCCTTCAACCATCTACTTCATCGGAATAAGAAGGTAGATTTCATTGAACAGTTCAATGAAAAGCTTCTTGTAAAACAAGAAAATGAGAACCTCCAGATTCTTGACGTTCGCAATTCTGAGATGACAGAAGTTAGCAAAAGTGAATTCATGACACCATCGGCTTTTATATTTCTGTACGAGAATCAGTTATTTTTAACGTTTCGTAATCGTACTGTGGCTGTTTGGAACTTTCGAGGGGAACTTGTGACTTCGTTTGAGGATCATCTTTTGTGGCATCCCGACTGCAATACTAATAACATATATATTACTAGTGACCAGGATCTTATTATTTCTTACTGCAAGGCTGATTCTGATGATCCATTAGCTGAAGGAAATGCAGGATCCATCAATATCAGCAATATTTTGACAGGGAAATGCCTTGCTAAAATAAAAGCCAGCAAGAATGTGGAAAATGAATGCAGTTGTAGTGGTGACTGTTGTGGAAGCAGTTGCAGTTCCAAGAAGCGTGCCCAGTCATCCAGAATTAGAAGTACAGTCGCAGAAGCCTTGGAAGATATTACTGCTCTCTTCTACGATGAAGAGCGCAACGAGATCTATACTGGCAATAGGCTTGGTCTAGTTCATGTATGGTCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

479

Amino Acids

54.42

Weight (kDa)

8.56

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 52 - 477 1.6e-227 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 404, 420
AasI GACNNNNNNGTC 1 cut(s) 101
Acc16I TGCGCA 1 cut(s) 324
AccB7I CCANNNNNTGG 1 cut(s) 533
AccII CGCG 1 cut(s) 34
AciI CCGC 4 cut(s) 32, 34, 62, 87
AclI AACGTT 1 cut(s) 998
AclWI GGATC 7 cut(s) 221, 728, 1068, 1128, 1151, 1176, 1189
AcoI YGGCCR 2 cut(s) 35, 46
AcsI RAATTY 1 cut(s) 944
AcuI CTGAAG 3 cut(s) 107, 447, 1188
AcvI CACGTG 1 cut(s) 302
AfaI GTAC 4 cut(s) 674, 977, 1012, 1333
AfiI CCNNNNNNNGG 6 cut(s) 44, 55, 83, 183, 366, 533
AflIII ACRYGT 1 cut(s) 691
AgsI TTSAA 7 cut(s) 287, 484, 506, 739, 808, 848, 856
AhlI ACTAGT 1 cut(s) 1109
AjiI CACGTC 1 cut(s) 131
AjnI CCWGG 4 cut(s) 177, 204, 571, 1116
AleI CACNNNNGTG 1 cut(s) 565
AluBI AGCT 6 cut(s) 121, 141, 411, 746, 865, 1166
AluI AGCT 6 cut(s) 121, 141, 411, 746, 865, 1166
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 7 cut(s) 221, 728, 1068, 1128, 1151, 1176, 1189
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 3 cut(s) 35, 46, 569
ApeKI GCWGC 2 cut(s) 296, 341
ApoI RAATTY 1 cut(s) 944
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 2 cut(s) 325, 1386
AsuC2I CCSGG 2 cut(s) 155, 717
AsuHPI GGTGA 1 cut(s) 1283
BaeGI GKGCMC 1 cut(s) 1312
BamHI GGATCC 1 cut(s) 1181
BauI CACGAG 1 cut(s) 496
BbrPI CACGTG 1 cut(s) 302
BbvI GCAGC 2 cut(s) 308, 353
BccI CCATC 4 cut(s) 779, 819, 964, 1193
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 4 cut(s) 179, 206, 573, 1118
BcnI CCSGG 2 cut(s) 155, 717
BcoDI GTCTC 1 cut(s) 206
BcuI ACTAGT 1 cut(s) 1109
BfaI CTAG 3 cut(s) 747, 1110, 1418
BfmI CTRYAG 1 cut(s) 777
BglII AGATCT 1 cut(s) 1392
BisI GCNGC 5 cut(s) 35, 63, 88, 297, 342
BlsI GCNGC 5 cut(s) 36, 64, 89, 298, 343
Bme1390I CCNGG 6 cut(s) 155, 179, 206, 573, 717, 1118
BmgBI CACGTC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 1183
BmrFI CCNGG 6 cut(s) 155, 179, 206, 573, 717, 1118
BmrI ACTGGG 1 cut(s) 1306
BmsI GCATC 3 cut(s) 163, 520, 1084
BmuI ACTGGG 1 cut(s) 1306
BpmI CTGGAG 2 cut(s) 188, 878
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 2 cut(s) 155, 717
BsaAI YACGTR 1 cut(s) 302
BsaJI CCNNGG 4 cut(s) 32, 177, 716, 1347
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 55, 83, 183, 366, 533
Bse1I ACTGG 2 cut(s) 1312, 1405
BseBI CCWGG 4 cut(s) 179, 206, 573, 1118
BseDI CCNNGG 4 cut(s) 32, 177, 716, 1347
BseGI GGATG 3 cut(s) 790, 1075, 1316
BseLI CCNNNNNNNGG 6 cut(s) 44, 55, 83, 183, 366, 533
BseMII CTCAG 2 cut(s) 546, 909
BseNI ACTGG 2 cut(s) 1312, 1405
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 1312
BseX3I CGGCCG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 308, 353
BsgI GTGCAG 2 cut(s) 360, 606
Bsh1236I CGCG 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 3 cut(s) 37, 48, 571
BsiEI CGRYCG 1 cut(s) 38
BsiSI CCGG 3 cut(s) 49, 154, 716
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 6 cut(s) 44, 55, 83, 183, 366, 533
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 375
BsmI GAATGC 1 cut(s) 1262
BsnI GGCC 3 cut(s) 37, 48, 571
Bsp1286I GDGCHC 1 cut(s) 1312
Bsp143I GATC 8 cut(s) 226, 649, 720, 1060, 1120, 1156, 1181, 1392
BspACI CCGC 4 cut(s) 32, 34, 62, 87
BspANI GGCC 3 cut(s) 37, 48, 571
BspCNI CTCAG 2 cut(s) 547, 910
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 1 cut(s) 1183
BspPI GGATC 7 cut(s) 221, 728, 1068, 1128, 1151, 1176, 1189
BspQI GCTCTTC 1 cut(s) 1374
BsrI ACTGG 2 cut(s) 1312, 1405
BssECI CCNNGG 4 cut(s) 32, 177, 716, 1347
BssMI GATC 8 cut(s) 226, 649, 720, 1060, 1120, 1156, 1181, 1392
BssSI CACGAG 1 cut(s) 496
BssT1I CCWWGG 1 cut(s) 1347
Bst2BI CACGAG 1 cut(s) 496
Bst2UI CCWGG 4 cut(s) 179, 206, 573, 1118
Bst4CI ACNGT 5 cut(s) 448, 852, 1015, 1277, 1336
Bst6I CTCTTC 2 cut(s) 1373, 1374
BstBAI YACGTR 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 535, 1237, 1308
BstDEI CTNAG 2 cut(s) 555, 918
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 3 cut(s) 790, 1075, 1316
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 325, 1386
BstKTI GATC 8 cut(s) 229, 652, 723, 1063, 1123, 1159, 1184, 1395
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 8 cut(s) 226, 649, 720, 1060, 1120, 1156, 1181, 1392
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 262, 539
BstNI CCWGG 4 cut(s) 179, 206, 573, 1118
BstNSI RCATGY 1 cut(s) 695
BstSCI CCNGG 6 cut(s) 153, 177, 204, 571, 715, 1116
BstSFI CTRYAG 1 cut(s) 777
BstSLI GKGCMC 1 cut(s) 1312
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 308, 353
BstX2I RGATCY 3 cut(s) 1120, 1181, 1392
BstYI RGATCY 3 cut(s) 1120, 1181, 1392
BstZI CGGCCG 1 cut(s) 35
BsuRI GGCC 3 cut(s) 37, 48, 571
BtgI CCRYGG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 186
BtrI CACGTC 1 cut(s) 131
BtsCI GGATG 3 cut(s) 790, 1075, 1316
Cac8I GCNNGC 3 cut(s) 535, 1237, 1308
CaiI CAGNNNCTG 1 cut(s) 533
CciI TCATGA 1 cut(s) 948
CfoI GCGC 2 cut(s) 325, 1386
Cfr42I CCGCGG 1 cut(s) 35
Csp6I GTAC 4 cut(s) 673, 976, 1011, 1332
CviAII CATG 6 cut(s) 224, 692, 724, 755, 949, 1424
CviQI GTAC 4 cut(s) 673, 976, 1011, 1332
DdeI CTNAG 2 cut(s) 555, 918
DpnI GATC 8 cut(s) 228, 651, 722, 1062, 1122, 1158, 1183, 1394
DpnII GATC 8 cut(s) 226, 649, 720, 1060, 1120, 1156, 1181, 1392
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 2 cut(s) 35, 46
EagI CGGCCG 1 cut(s) 35
Eam1104I CTCTTC 2 cut(s) 1373, 1374
EarI CTCTTC 2 cut(s) 1373, 1374
EclXI CGGCCG 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 1347
Eco32I GATATC 1 cut(s) 21
Eco52I CGGCCG 1 cut(s) 35
Eco57I CTGAAG 3 cut(s) 107, 447, 1188
Eco72I CACGTG 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 4 cut(s) 177, 204, 571, 1116
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 1347
ErhI CCWWGG 1 cut(s) 1347
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 6 cut(s) 227, 695, 727, 758, 952, 1427
FaqI GGGAC 1 cut(s) 375
FatI CATG 6 cut(s) 223, 691, 723, 754, 948, 1423
Fnu4HI GCNGC 5 cut(s) 35, 63, 88, 297, 342
FokI GGATG 3 cut(s) 797, 1062, 1303
Fsp4HI GCNGC 5 cut(s) 35, 63, 88, 297, 342
FspBI CTAG 3 cut(s) 747, 1110, 1418
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 2 cut(s) 324, 1385
GluI GCNGC 5 cut(s) 35, 63, 88, 297, 342
GsuI CTGGAG 2 cut(s) 188, 878
HaeIII GGCC 3 cut(s) 37, 48, 571
HapII CCGG 3 cut(s) 49, 154, 716
HhaI GCGC 2 cut(s) 325, 1386
Hin1II CATG 6 cut(s) 227, 695, 727, 758, 952, 1427
Hin6I GCGC 2 cut(s) 323, 1384
HinP1I GCGC 2 cut(s) 323, 1384
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 3 cut(s) 119, 409, 863
HinfI GANTC 8 cut(s) 28, 434, 551, 557, 769, 898, 982, 1148
HpaII CCGG 3 cut(s) 49, 154, 716
HphI GGTGA 1 cut(s) 1283
Hpy166II GTNNAC 3 cut(s) 94, 106, 524
Hpy188I TCNGA 9 cut(s) 192, 366, 381, 466, 556, 685, 825, 919, 1153
Hpy188III TCNNGA 7 cut(s) 392, 766, 895, 902, 949, 1079, 1320
Hpy8I GTNNAC 3 cut(s) 94, 106, 524
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 5 cut(s) 510, 598, 814, 826, 1163
HpyCH4III ACNGT 5 cut(s) 448, 852, 1015, 1277, 1336
HpyCH4IV ACGT 4 cut(s) 130, 301, 906, 998
HpyCH4V TGCA 7 cut(s) 341, 623, 1086, 1140, 1178, 1260, 1293
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 539
HpyF3I CTNAG 2 cut(s) 555, 918
HpySE526I ACGT 4 cut(s) 130, 301, 906, 998
Hsp92II CATG 6 cut(s) 227, 695, 727, 758, 952, 1427
HspAI GCGC 2 cut(s) 323, 1384
KspI CCGCGG 1 cut(s) 35
Kzo9I GATC 8 cut(s) 226, 649, 720, 1060, 1120, 1156, 1181, 1392
LguI GCTCTTC 1 cut(s) 1374
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 2 cut(s) 308, 353
LweI GCATC 3 cut(s) 163, 520, 1084
MaeI CTAG 3 cut(s) 747, 1110, 1418
MaeII ACGT 4 cut(s) 130, 301, 906, 998
MaeIII GTNAC 6 cut(s) 149, 302, 558, 1045, 1112, 1271
MalI GATC 8 cut(s) 228, 651, 722, 1062, 1122, 1158, 1183, 1394
MboI GATC 8 cut(s) 226, 649, 720, 1060, 1120, 1156, 1181, 1392
MboII GAAGA 3 cut(s) 1360, 1364, 1391
MflI RGATCY 3 cut(s) 1120, 1181, 1392
MhlI GDGCHC 1 cut(s) 1312
MluCI AATT 9 cut(s) 279, 288, 469, 702, 732, 913, 944, 1323, 1435
MlyI GAGTC 4 cut(s) 37, 428, 560, 566
MroXI GAANNNNTTC 1 cut(s) 864
MseI TTAA 6 cut(s) 114, 654, 705, 731, 995, 1438
MslI CAYNNNNRTG 1 cut(s) 565
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 3 cut(s) 49, 154, 716
MspR9I CCNGG 6 cut(s) 155, 179, 206, 573, 717, 1118
Mva1269I GAATGC 1 cut(s) 1262
MvaI CCWGG 4 cut(s) 179, 206, 573, 1118
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 262, 539
NciI CCSGG 2 cut(s) 155, 717
NdeII GATC 8 cut(s) 226, 649, 720, 1060, 1120, 1156, 1181, 1392
NlaIII CATG 6 cut(s) 227, 695, 727, 758, 952, 1427
NlaIV GGNNCC 1 cut(s) 1183
NmeAIII GCCGAG 1 cut(s) 377
NmuCI GTSAC 6 cut(s) 149, 302, 558, 1045, 1112, 1271
NsbI TGCGCA 1 cut(s) 324
NspI RCATGY 1 cut(s) 695
OliI CACNNNNGTG 1 cut(s) 565
PagI TCATGA 1 cut(s) 948
PciI ACATGT 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 1374
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 196
PctI GAATGC 1 cut(s) 1262
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 4 cut(s) 769, 898, 982, 1148
PflMI CCANNNNNTGG 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 204
PkrI GCNGC 5 cut(s) 36, 64, 89, 298, 343
PleI GAGTC 4 cut(s) 36, 428, 559, 565
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
PpsI GAGTC 4 cut(s) 36, 428, 559, 565
Ppu21I YACGTR 1 cut(s) 302
PscI ACATGT 1 cut(s) 691
PsiI TTATAA 2 cut(s) 404, 420
Psp1406I AACGTT 1 cut(s) 998
Psp6I CCWGG 4 cut(s) 177, 204, 571, 1116
PspCI CACGTG 1 cut(s) 302
PspGI CCWGG 4 cut(s) 177, 204, 571, 1116
PspN4I GGNNCC 1 cut(s) 1183
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 3 cut(s) 1120, 1181, 1392
RsaI GTAC 4 cut(s) 674, 977, 1012, 1333
RsaNI GTAC 4 cut(s) 673, 976, 1011, 1332
RseI CAYNNNNRTG 1 cut(s) 565
SacII CCGCGG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 1374
SaqAI TTAA 6 cut(s) 114, 654, 705, 731, 995, 1438
SatI GCNGC 5 cut(s) 35, 63, 88, 297, 342
Sau3AI GATC 8 cut(s) 226, 649, 720, 1060, 1120, 1156, 1181, 1392
SchI GAGTC 4 cut(s) 37, 428, 560, 566
ScrFI CCNGG 6 cut(s) 155, 179, 206, 573, 717, 1118
SduI GDGCHC 1 cut(s) 1312
SfaNI GCATC 3 cut(s) 163, 520, 1084
SfcI CTRYAG 1 cut(s) 777
Sfr303I CCGCGG 1 cut(s) 35
SgrBI CCGCGG 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
SpeI ACTAGT 1 cut(s) 1109
Sse9I AATT 9 cut(s) 279, 288, 469, 702, 732, 913, 944, 1323, 1435
SsiI CCGC 4 cut(s) 32, 34, 62, 87
SspI AATATT 2 cut(s) 196, 1201
SspMI CTAG 3 cut(s) 747, 1110, 1418
StyD4I CCNGG 6 cut(s) 153, 177, 204, 571, 715, 1116
StyI CCWWGG 1 cut(s) 1347
TaaI ACNGT 5 cut(s) 448, 852, 1015, 1277, 1336
TaiI ACGT 4 cut(s) 133, 304, 909, 1001
TaqI TCGA 2 cut(s) 275, 1033
TasI AATT 9 cut(s) 279, 288, 469, 702, 732, 913, 944, 1323, 1435
TatI WGTACW 2 cut(s) 672, 1331
TauI GCSGC 3 cut(s) 37, 65, 90
TfiI GAWTC 4 cut(s) 769, 898, 982, 1148
Tru1I TTAA 6 cut(s) 114, 654, 705, 731, 995, 1438
Tru9I TTAA 6 cut(s) 114, 654, 705, 731, 995, 1438
TseFI GTSAC 6 cut(s) 149, 302, 558, 1045, 1112, 1271
TseI GCWGC 2 cut(s) 296, 341
Tsp45I GTSAC 6 cut(s) 149, 302, 558, 1045, 1112, 1271
TspDTI ATGAA 8 cut(s) 411, 809, 832, 873, 937, 1269, 1392, 1412
Van91I CCANNNNNTGG 1 cut(s) 533
XapI RAATTY 1 cut(s) 944
XceI RCATGY 1 cut(s) 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 1243
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 3 cut(s) 747, 1110, 1418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.