Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034641.1

Orthogroup ID

OG0001828

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2508

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034641.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1168 bp

atggttctgccttttctgcgaaagaggtcgaaaattattgaaattgtagcagcacgtgacattgtgtttgctcttgcgcagtctggtgtttgtgcagcgtttagccgagaaaccaatcagaggatatgctttctgaatgtcagtcccgatgaagttataagaagcttgttttataataaaaacaatgactcacttatcacagtttcagtttatgcttcagacaatttcagttctttgaaatgtagaagcacgaggattgaatacatacgaaggggtaaaccagatgctggctttgctctttttgagtctgagtcactaaagtggcctggatttgtagagtttgatgatgtaaatgggaaggttctcacttactctgcacaagatagtatatacaaggtgtttgatcttaaaaactatacaatgttgtactccatatcagataaacatgtccaagaaattaagattagtccggggatcatgttgttaattttcaataaagctagtagccatgttcctctcaagattctttctatagaggatggtagtgttctcaaatccttcaaccatctacttcatcggaataagaaggtagatttcattgaacagttcaatgaaaagcttcttgtaaaacaagaaaatgagaacctccagattcttgacgttcgcaattctgagatgacagaagttagcaaaagtgaattcatgacaccatcggcttttatatttctgtacgagaatcagttatttttaacgtttcgtaatcgtactgtggctgtttggaactttcgaggggaacttgtgacttcgtttgaggatcatcttttgtggcatcccgactgcaatactaataacatatatattactagtgaccaggatcttattatttcttactgcaaggctgattctgatgatccattagctgaaggaaatgcaggatccatcaatatcagcaatattttgacagggaaatgccttgctaaaataaaagccagcaagaatgtggaaaatgaatgcagttgtagtggtgactgttgtggaagcagttgcagttccaagaagcgtgcccagtcatccagaattagaagtacagtcgcagaagccttggaagatattactgctctcttctacgatgaagagcgcaacgagatctatactggcaataggcttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

44.16

Weight (kDa)

5.97

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38630 AT2G38630 AT2G38630 AT3G54190
fragaria_vesca	FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_7g26350 FvH4_7g26350 FvH4_7g26350 FvH4_7g26350
malus_domestica	MD01G1172600.v1.1 MD04G1179700.v1.1 MD07G1238900.v1.1 MD12G1194800.v1.1
prunus_persica	Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.6G299700_v2.0.a1 Prupe.6G299700_v2.0.a1
pyrus_communis	pycom01g18410 pycom04g15870 pycom07g21490 pycom12g18100
rosa_chinensis	RchiOBHm_Chr1g0372891 RchiOBHm_Chr3g0459581
rosa_laevigata	RLG00000025078 RLG00000026868
rosa_multiflora	Rmu_sc0000240.1_g000010 Rmu_sc0006531.1_g000003 Rmu_sc0011206.1_g000004 Rmu_sc0034641.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284650 Rroxscaffold_6G00420170
rosa_rugosa	Rorug01G0374600 Rorug01G0374700 Rorug03G0036500
rosa_samantha	Rh1CG360500 Rh1DG378000 Rh3AG095400 Rh3CG099700
rosa_wichuraiana	Rw0G013860 Rw0G017570 Rw1G033760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	158, 174
Acc16I	TGCGCA	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	287
AclI	AACGTT	1 cut(s)	752
AclWI	GGATC	6 cut(s)	482, 822, 882, 905, 930, 943
AcsI	RAATTY	1 cut(s)	698
AcuI	CTGAAG	2 cut(s)	201, 942
AcvI	CACGTG	1 cut(s)	56
AfaI	GTAC	4 cut(s)	428, 731, 766, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	120, 287
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	7 cut(s)	41, 238, 260, 493, 562, 602, 610
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	2 cut(s)	325, 870
AleI	CACNNNNGTG	1 cut(s)	319
AluBI	AGCT	4 cut(s)	165, 500, 619, 920
AluI	AGCT	4 cut(s)	165, 500, 619, 920
AlwI	GGATC	6 cut(s)	482, 822, 882, 905, 930, 943
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	50, 95
ApoI	RAATTY	1 cut(s)	698
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
Asp700I	GAANNNNTTC	1 cut(s)	618
AspLEI	GCGC	2 cut(s)	79, 1140
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	1037
BaeGI	GKGCMC	1 cut(s)	1066
BamHI	GGATCC	1 cut(s)	935
BauI	CACGAG	1 cut(s)	250
BbrPI	CACGTG	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	62, 107
BccI	CCATC	4 cut(s)	533, 573, 718, 947
BciT130I	CCWGG	2 cut(s)	327, 872
BcnI	CCSGG	1 cut(s)	471
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	2 cut(s)	501, 864
BfmI	CTRYAG	1 cut(s)	531
BglII	AGATCT	1 cut(s)	1146
BisI	GCNGC	2 cut(s)	51, 96
BlsI	GCNGC	2 cut(s)	52, 97
Bme1390I	CCNGG	3 cut(s)	327, 471, 872
BmiI	GGNNCC	1 cut(s)	937
BmrFI	CCNGG	3 cut(s)	327, 471, 872
BmrI	ACTGGG	1 cut(s)	1060
BmsI	GCATC	2 cut(s)	274, 838
BmuI	ACTGGG	1 cut(s)	1060
BpmI	CTGGAG	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	470, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 287
Bse1I	ACTGG	2 cut(s)	1066, 1159
BseBI	CCWGG	2 cut(s)	327, 872
BseDI	CCNNGG	2 cut(s)	470, 1101
BseGI	GGATG	3 cut(s)	544, 829, 1070
BseLI	CCNNNNNNNGG	2 cut(s)	120, 287
BseMII	CTCAG	2 cut(s)	300, 663
BseNI	ACTGG	2 cut(s)	1066, 1159
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	2 cut(s)	62, 107
BsgI	GTGCAG	2 cut(s)	114, 360
BshFI	GGCC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	120, 287
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	1016
BsnI	GGCC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	1066
Bsp143I	GATC	7 cut(s)	403, 474, 814, 874, 910, 935, 1146
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	301, 664
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	1 cut(s)	937
BspPI	GGATC	6 cut(s)	482, 822, 882, 905, 930, 943
BspQI	GCTCTTC	1 cut(s)	1128
BsrI	ACTGG	2 cut(s)	1066, 1159
BssECI	CCNNGG	2 cut(s)	470, 1101
BssMI	GATC	7 cut(s)	403, 474, 814, 874, 910, 935, 1146
BssSI	CACGAG	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	1101
Bst2BI	CACGAG	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	327, 872
Bst4CI	ACNGT	5 cut(s)	202, 606, 769, 1031, 1090
Bst6I	CTCTTC	2 cut(s)	1127, 1128
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	289, 991, 1062
BstDEI	CTNAG	2 cut(s)	309, 672
BstF5I	GGATG	3 cut(s)	544, 829, 1070
BstHHI	GCGC	2 cut(s)	79, 1140
BstKTI	GATC	7 cut(s)	406, 477, 817, 877, 913, 938, 1149
BstMBI	GATC	7 cut(s)	403, 474, 814, 874, 910, 935, 1146
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 293
BstNI	CCWGG	2 cut(s)	327, 872
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	325, 469, 870
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	1066
BstV1I	GCAGC	2 cut(s)	62, 107
BstX2I	RGATCY	3 cut(s)	874, 935, 1146
BstYI	RGATCY	3 cut(s)	874, 935, 1146
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	544, 829, 1070
Cac8I	GCNNGC	3 cut(s)	289, 991, 1062
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	2 cut(s)	79, 1140
Csp6I	GTAC	4 cut(s)	427, 730, 765, 1086
CviAII	CATG	4 cut(s)	446, 478, 509, 703
CviQI	GTAC	4 cut(s)	427, 730, 765, 1086
DdeI	CTNAG	2 cut(s)	309, 672
DpnI	GATC	7 cut(s)	405, 476, 816, 876, 912, 937, 1148
DpnII	GATC	7 cut(s)	403, 474, 814, 874, 910, 935, 1146
Eam1104I	CTCTTC	2 cut(s)	1127, 1128
EarI	CTCTTC	2 cut(s)	1127, 1128
Eco130I	CCWWGG	1 cut(s)	1101
Eco57I	CTGAAG	2 cut(s)	201, 942
Eco72I	CACGTG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	698
EcoRII	CCWGG	2 cut(s)	325, 870
EcoT14I	CCWWGG	1 cut(s)	1101
ErhI	CCWWGG	1 cut(s)	1101
FaeI	CATG	4 cut(s)	449, 481, 512, 706
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	4 cut(s)	445, 477, 508, 702
Fnu4HI	GCNGC	2 cut(s)	51, 96
FokI	GGATG	3 cut(s)	551, 816, 1057
Fsp4HI	GCNGC	2 cut(s)	51, 96
FspBI	CTAG	2 cut(s)	501, 864
FspI	TGCGCA	1 cut(s)	78
GlaI	GCGC	2 cut(s)	78, 1139
GluI	GCNGC	2 cut(s)	51, 96
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	1 cut(s)	470
HhaI	GCGC	2 cut(s)	79, 1140
Hin1II	CATG	4 cut(s)	449, 481, 512, 706
Hin6I	GCGC	2 cut(s)	77, 1138
HinP1I	GCGC	2 cut(s)	77, 1138
HindIII	AAGCTT	2 cut(s)	163, 617
HinfI	GANTC	7 cut(s)	188, 305, 311, 523, 652, 736, 902
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	1037
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	8 cut(s)	120, 135, 220, 310, 439, 579, 673, 907
Hpy188III	TCNNGA	7 cut(s)	146, 520, 649, 656, 703, 833, 1074
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	5 cut(s)	264, 352, 568, 580, 917
HpyCH4III	ACNGT	5 cut(s)	202, 606, 769, 1031, 1090
HpyCH4IV	ACGT	3 cut(s)	55, 660, 752
HpyCH4V	TGCA	7 cut(s)	95, 377, 840, 894, 932, 1014, 1047
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 293
HpyF3I	CTNAG	2 cut(s)	309, 672
HpySE526I	ACGT	3 cut(s)	55, 660, 752
Hsp92II	CATG	4 cut(s)	449, 481, 512, 706
HspAI	GCGC	2 cut(s)	77, 1138
Kzo9I	GATC	7 cut(s)	403, 474, 814, 874, 910, 935, 1146
LguI	GCTCTTC	1 cut(s)	1128
Lsp1109I	GCAGC	2 cut(s)	62, 107
LweI	GCATC	2 cut(s)	274, 838
MaeI	CTAG	2 cut(s)	501, 864
MaeII	ACGT	3 cut(s)	55, 660, 752
MaeIII	GTNAC	5 cut(s)	56, 312, 799, 866, 1025
MalI	GATC	7 cut(s)	405, 476, 816, 876, 912, 937, 1148
MboI	GATC	7 cut(s)	403, 474, 814, 874, 910, 935, 1146
MboII	GAAGA	3 cut(s)	1114, 1118, 1145
MflI	RGATCY	3 cut(s)	874, 935, 1146
MhlI	GDGCHC	1 cut(s)	1066
MluCI	AATT	8 cut(s)	33, 42, 223, 456, 486, 667, 698, 1077
MlyI	GAGTC	3 cut(s)	182, 314, 320
MnlI	CCTC	8 cut(s)	18, 114, 246, 525, 529, 656, 782, 805
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	4 cut(s)	408, 459, 485, 749
MslI	CAYNNNNRTG	1 cut(s)	319
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	3 cut(s)	327, 471, 872
Mva1269I	GAATGC	1 cut(s)	1016
MvaI	CCWGG	2 cut(s)	327, 872
MwoI	GCNNNNNNNGC	2 cut(s)	16, 293
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	7 cut(s)	403, 474, 814, 874, 910, 935, 1146
NlaIII	CATG	4 cut(s)	449, 481, 512, 706
NlaIV	GGNNCC	1 cut(s)	937
NmeAIII	GCCGAG	1 cut(s)	131
NmuCI	GTSAC	5 cut(s)	56, 312, 799, 866, 1025
NsbI	TGCGCA	1 cut(s)	78
NspI	RCATGY	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	319
PagI	TCATGA	1 cut(s)	702
PciI	ACATGT	1 cut(s)	445
PciSI	GCTCTTC	1 cut(s)	1128
PctI	GAATGC	1 cut(s)	1016
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	4 cut(s)	523, 652, 736, 902
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	52, 97
PleI	GAGTC	3 cut(s)	182, 313, 319
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
PpsI	GAGTC	3 cut(s)	182, 313, 319
Ppu21I	YACGTR	1 cut(s)	56
PscI	ACATGT	1 cut(s)	445
PsiI	TTATAA	2 cut(s)	158, 174
Psp1406I	AACGTT	1 cut(s)	752
Psp6I	CCWGG	2 cut(s)	325, 870
PspCI	CACGTG	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	325, 870
PspN4I	GGNNCC	1 cut(s)	937
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	3 cut(s)	874, 935, 1146
RsaI	GTAC	4 cut(s)	428, 731, 766, 1087
RsaNI	GTAC	4 cut(s)	427, 730, 765, 1086
RseI	CAYNNNNRTG	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	4 cut(s)	408, 459, 485, 749
SatI	GCNGC	2 cut(s)	51, 96
Sau3AI	GATC	7 cut(s)	403, 474, 814, 874, 910, 935, 1146
SchI	GAGTC	3 cut(s)	182, 314, 320
ScrFI	CCNGG	3 cut(s)	327, 471, 872
SduI	GDGCHC	1 cut(s)	1066
SfaNI	GCATC	2 cut(s)	274, 838
SfcI	CTRYAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	8 cut(s)	33, 42, 223, 456, 486, 667, 698, 1077
SspI	AATATT	1 cut(s)	955
SspMI	CTAG	2 cut(s)	501, 864
StyD4I	CCNGG	3 cut(s)	325, 469, 870
StyI	CCWWGG	1 cut(s)	1101
TaaI	ACNGT	5 cut(s)	202, 606, 769, 1031, 1090
TaiI	ACGT	3 cut(s)	58, 663, 755
TaqI	TCGA	2 cut(s)	29, 787
TasI	AATT	8 cut(s)	33, 42, 223, 456, 486, 667, 698, 1077
TatI	WGTACW	2 cut(s)	426, 1085
TfiI	GAWTC	4 cut(s)	523, 652, 736, 902
Tru1I	TTAA	4 cut(s)	408, 459, 485, 749
Tru9I	TTAA	4 cut(s)	408, 459, 485, 749
TseFI	GTSAC	5 cut(s)	56, 312, 799, 866, 1025
TseI	GCWGC	2 cut(s)	50, 95
Tsp45I	GTSAC	5 cut(s)	56, 312, 799, 866, 1025
TspDTI	ATGAA	7 cut(s)	165, 563, 586, 627, 691, 1023, 1146
Van91I	CCANNNNNTGG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	698
XceI	RCATGY	1 cut(s)	449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	997
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	2 cut(s)	501, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.