Rh3AG095400
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001828
Physical Location & Seq
Reverse (-)
7863944 .. 7868825
4882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG095400.1

Sequence Viewer

Length: 1221 bp
ATGGAAGTGGGGAGGAGGATATCGGCGAGTCCTCGGCCGTGCTCCGGCCGGCGAGTGGTGGCGAGGAAGAAGAGGGCCGCCGGAGATGGGTTCGTCAACAGCGTCAAGAAGCTTCAGAGGCGTGAGATTTGTTCAAAGCGTGATCGAGCCTTTGGGATGAGCAATGCCCAAGAGAGATTCCGCAACATGCACTTAATGGAGGAATATGATACTCATGATCCCAAGGGTCATTTGTCTTCCAAATTGCCTTTTCTGATGAAGAGGACAAAGGTAATTGAGATAGTTGCGGCACGTGACATAGTCTTCGCTCTTGCTCATTCTGGTGTATGTGCAGCTTTTAGTAGAGAGACAAATGAGAGGATCTGTTTCTTGAATGTTAGTCCTGATGAAGTCATCCGAAGCTTGTTCTATAACAAGAACAATGATTCACTCATCACAGTTTCTGTCTATGCTTCGGACAACTTCAGCTCTTTGAAATGCAGATCTACAAGGATTGAGTATATAAGGAGGGGCAAGCCAGATGCTGGTTTTGCTCTTTTTGAGTCTGAGTCCTTGAAGTGGCCTGGGTTTGTAGAGTTTGATGATGTTAATGGCAAGGTCTTAACATACTCTGCACAAGATAGTATATATAAGGTGTTCGACCTTAAAAACTATTCCATGCTTTACTCTATATCAGACAAAAATGTACAAGAAATCAAGATCAGTCCAGGTATCATGCTGCTGATTTTTAATAGAGCTAGTAGCCATGTTCCGCTGAAGATTCTGTCAATAGAAGATGGCACAGTTCTCAAAGCGTTTAATCATCTGCTTCATCGAAATAAGAAGGTGGATTTCATAGAACAATTCAACGAAAAGCTTCTCGTTAAGCAAGAAAATGAGAATCTTCAGATTCTTGATGTTCGAAATGCGGAGCTGATGGAAGTTAACAGAGCTGAGTTCATGACTCCATCAGCATTTATCTTTCTGTATGAGAACCAGCTATTCCTGACATTCAGAAATAGGACTGTGGCCGTCTGGAACTTTCGTGGAGAACTTGTAACTTCATTTGAGGATCACTTGTTGTGGCATCCTGACTGCAATACCAATAACATTTATATAACAAGTGATCAGGATTTGATCATATCCTACTGCAAAGCTGATTCTGATGATCATTGGATGGAACCAACTGGTAATACTTTTCACTTCCTTTTAGATTATATACACTTTTTAGTGGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

46.93

Weight (kDa)

8.35

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 49 - 389 1.7e-196 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 524
AciI CCGC 5 cut(s) 78, 181, 287, 752, 908
AclWI GGATC 3 cut(s) 212, 368, 1059
AcoI YGGCCR 3 cut(s) 35, 46, 1008
AcuI CTGAAG 4 cut(s) 98, 448, 776, 869
AcvI CACGTG 1 cut(s) 293
AfaI GTAC 1 cut(s) 687
AfiI CCNNNNNNNGG 5 cut(s) 44, 55, 87, 524, 558
AgsI TTSAA 5 cut(s) 135, 373, 475, 556, 847
AjnI CCWGG 2 cut(s) 562, 706
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 3 cut(s) 212, 368, 1059
AlwNI CAGNNNCTG 2 cut(s) 443, 524
AoxI GGCC 5 cut(s) 35, 46, 75, 560, 1008
ApeKI GCWGC 2 cut(s) 332, 718
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 1 cut(s) 855
AspS9I GGNCC 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 901
BbrPI CACGTG 1 cut(s) 293
BbsI GAAGAC 2 cut(s) 228, 295
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 344, 705
BccI CCATC 5 cut(s) 80, 770, 910, 955, 1150
BceAI ACGGC 2 cut(s) 22, 995
BciT130I CCWGG 2 cut(s) 564, 708
BclI TGATCA 3 cut(s) 1105, 1116, 1147
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 738
BglII AGATCT 1 cut(s) 482
BisI GCNGC 4 cut(s) 78, 288, 333, 719
BlsI GCNGC 4 cut(s) 79, 289, 334, 720
Bme1390I CCNGG 2 cut(s) 564, 708
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 1161
BmrFI CCNGG 2 cut(s) 564, 708
BmsI GCATC 2 cut(s) 511, 1075
BpiI GAAGAC 2 cut(s) 228, 295
Bpu14I TTCGAA 1 cut(s) 901
BsaAI YACGTR 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 32, 222, 563
BsaXI ACNNNNNCTCC 2 cut(s) 1020, 1050
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 55, 87, 524, 558
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 1171
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 564, 708
BseDI CCNNGG 3 cut(s) 32, 222, 563
BseGI GGATG 4 cut(s) 162, 393, 1066, 1161
BseLI CCNNNNNNNGG 5 cut(s) 44, 55, 87, 524, 558
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 537, 924
BseNI ACTGG 1 cut(s) 1171
BseRI GAGGAG 1 cut(s) 28
BseX3I CGGCCG 2 cut(s) 35, 46
BseXI GCAGC 2 cut(s) 344, 705
BsgI GTGCAG 2 cut(s) 351, 597
Bsh1285I CGRYCG 2 cut(s) 38, 49
BshFI GGCC 5 cut(s) 37, 48, 77, 562, 1010
BsiEI CGRYCG 2 cut(s) 38, 49
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 3 cut(s) 45, 49, 81
BslI CCNNNNNNNGG 5 cut(s) 44, 55, 87, 524, 558
BsmAI GTCTC 1 cut(s) 341
BsnI GGCC 5 cut(s) 37, 48, 77, 562, 1010
Bsp119I TTCGAA 1 cut(s) 901
Bsp1286I GDGCHC 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 685
Bsp143I GATC 9 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116, 1147
BspACI CCGC 5 cut(s) 78, 181, 287, 752, 908
BspANI GGCC 5 cut(s) 37, 48, 77, 562, 1010
BspCNI CTCAG 2 cut(s) 538, 925
BspHI TCATGA 2 cut(s) 214, 939
BspLI GGNNCC 1 cut(s) 1161
BspPI GGATC 3 cut(s) 212, 368, 1059
BspT104I TTCGAA 1 cut(s) 901
BsrDI GCAATG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 685
BsrI ACTGG 1 cut(s) 1171
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 3 cut(s) 32, 222, 563
BssMI GATC 9 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116, 1147
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 564, 708
Bst4CI ACNGT 3 cut(s) 439, 784, 1006
Bst6I CTCTTC 2 cut(s) 65, 254
BstAUI TGTACA 1 cut(s) 685
BstBAI YACGTR 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 901
BstC8I GCNNGC 2 cut(s) 50, 515
BstDEI CTNAG 2 cut(s) 546, 933
BstF5I GGATG 4 cut(s) 162, 393, 1066, 1161
BstKTI GATC 9 cut(s) 145, 220, 363, 485, 702, 1054, 1108, 1119, 1150
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 9 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116, 1147
BstMCI CGRYCG 2 cut(s) 38, 49
BstMWI GCNNNNNNNGC 2 cut(s) 118, 530
BstNI CCWGG 2 cut(s) 564, 708
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 562, 706
BstV1I GCAGC 2 cut(s) 344, 705
BstV2I GAAGAC 2 cut(s) 228, 295
BstX2I RGATCY 2 cut(s) 360, 482
BstYI RGATCY 2 cut(s) 360, 482
BstZI CGGCCG 2 cut(s) 35, 46
BsuRI GGCC 5 cut(s) 37, 48, 77, 562, 1010
BtsCI GGATG 4 cut(s) 162, 393, 1066, 1161
Cac8I GCNNGC 2 cut(s) 50, 515
CaiI CAGNNNCTG 2 cut(s) 443, 524
CciI TCATGA 2 cut(s) 214, 939
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 75
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 686
CviAII CATG 6 cut(s) 187, 215, 658, 715, 746, 940
CviQI GTAC 1 cut(s) 686
DdeI CTNAG 2 cut(s) 546, 933
DpnI GATC 9 cut(s) 144, 219, 362, 484, 701, 1053, 1107, 1118, 1149
DpnII GATC 9 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116, 1147
EaeI YGGCCR 3 cut(s) 35, 46, 1008
EagI CGGCCG 2 cut(s) 35, 46
Eam1104I CTCTTC 2 cut(s) 65, 254
EarI CTCTTC 2 cut(s) 65, 254
EclXI CGGCCG 2 cut(s) 35, 46
Eco130I CCWWGG 1 cut(s) 222
Eco32I GATATC 1 cut(s) 21
Eco52I CGGCCG 2 cut(s) 35, 46
Eco57I CTGAAG 4 cut(s) 98, 448, 776, 869
Eco72I CACGTG 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 562, 706
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 6 cut(s) 190, 218, 661, 718, 749, 943
FatI CATG 6 cut(s) 186, 214, 657, 714, 745, 939
FbaI TGATCA 3 cut(s) 1105, 1116, 1147
Fnu4HI GCNGC 4 cut(s) 78, 288, 333, 719
FokI GGATG 4 cut(s) 169, 380, 1053, 1168
Fsp4HI GCNGC 4 cut(s) 78, 288, 333, 719
FspBI CTAG 1 cut(s) 738
GluI GCNGC 4 cut(s) 78, 288, 333, 719
HaeIII GGCC 5 cut(s) 37, 48, 77, 562, 1010
HapII CCGG 3 cut(s) 45, 49, 81
HgaI GACGC 1 cut(s) 91
Hin1II CATG 6 cut(s) 190, 218, 661, 718, 749, 943
HincII GTYRAC 2 cut(s) 97, 925
HindII GTYRAC 2 cut(s) 97, 925
HindIII AAGCTT 3 cut(s) 110, 400, 854
HpaI GTTAAC 1 cut(s) 925
HpaII CCGG 3 cut(s) 45, 49, 81
Hpy166II GTNNAC 2 cut(s) 97, 925
Hpy188I TCNGA 9 cut(s) 117, 255, 398, 457, 547, 676, 888, 995, 1144
Hpy8I GTNNAC 2 cut(s) 97, 925
HpyAV CCTTC 1 cut(s) 817
HpyCH4III ACNGT 3 cut(s) 439, 784, 1006
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 7 cut(s) 190, 332, 480, 614, 1077, 1131, 1217
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 530
HpyF3I CTNAG 2 cut(s) 546, 933
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 6 cut(s) 190, 218, 661, 718, 749, 943
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
Ksp22I TGATCA 3 cut(s) 1105, 1116, 1147
KspAI GTTAAC 1 cut(s) 925
Kzo9I GATC 9 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116, 1147
LmnI GCTCC 2 cut(s) 47, 910
Lsp1109I GCAGC 2 cut(s) 344, 705
LweI GCATC 2 cut(s) 511, 1075
MaeI CTAG 1 cut(s) 738
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 293, 1036
MalI GATC 9 cut(s) 144, 219, 362, 484, 701, 1053, 1107, 1118, 1149
MboI GATC 9 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116, 1147
MboII GAAGA 8 cut(s) 79, 82, 228, 271, 295, 769, 785, 875
MflI RGATCY 2 cut(s) 360, 482
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 3 cut(s) 242, 273, 842
MlyI GAGTC 4 cut(s) 37, 551, 557, 937
MroNI GCCGGC 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 8 cut(s) 194, 588, 602, 645, 729, 798, 864, 924
MslI CAYNNNNRTG 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 754
MspI CCGG 3 cut(s) 45, 49, 81
MspR9I CCNGG 2 cut(s) 564, 708
MvaI CCWGG 2 cut(s) 564, 708
MwoI GCNNNNNNNGC 2 cut(s) 118, 530
NaeI GCCGGC 1 cut(s) 50
NdeII GATC 9 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116, 1147
NgoMIV GCCGGC 1 cut(s) 48
NlaIII CATG 6 cut(s) 190, 218, 661, 718, 749, 943
NlaIV GGNNCC 1 cut(s) 1161
NmeAIII GCCGAG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 1 cut(s) 190
NspV TTCGAA 1 cut(s) 901
PagI TCATGA 2 cut(s) 214, 939
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 6 cut(s) 177, 425, 760, 880, 889, 1139
PflFI GACNNNGTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 524
PkrI GCNGC 4 cut(s) 79, 289, 334, 720
PleI GAGTC 4 cut(s) 36, 550, 556, 937
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
PpsI GAGTC 4 cut(s) 36, 550, 556, 937
Ppu21I YACGTR 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 562, 706
PspCI CACGTG 1 cut(s) 293
PspGI CCWGG 2 cut(s) 562, 706
PspN4I GGNNCC 1 cut(s) 1161
PspPI GGNCC 1 cut(s) 75
PstNI CAGNNNCTG 2 cut(s) 443, 524
PsuI RGATCY 2 cut(s) 360, 482
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 1 cut(s) 687
RsaNI GTAC 1 cut(s) 686
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 8 cut(s) 194, 588, 602, 645, 729, 798, 864, 924
SatI GCNGC 4 cut(s) 78, 288, 333, 719
Sau3AI GATC 9 cut(s) 142, 217, 360, 482, 699, 1051, 1105, 1116, 1147
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 4 cut(s) 37, 551, 557, 937
ScrFI CCNGG 2 cut(s) 564, 708
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 2 cut(s) 511, 1075
SfuI TTCGAA 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 3 cut(s) 242, 273, 842
SsiI CCGC 5 cut(s) 78, 181, 287, 752, 908
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 2 cut(s) 562, 706
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 3 cut(s) 439, 784, 1006
TaiI ACGT 1 cut(s) 295
TaqI TCGA 4 cut(s) 145, 639, 814, 901
TasI AATT 3 cut(s) 242, 273, 842
TatI WGTACW 1 cut(s) 685
TauI GCSGC 2 cut(s) 80, 290
TfiI GAWTC 6 cut(s) 177, 425, 760, 880, 889, 1139
Tru1I TTAA 8 cut(s) 194, 588, 602, 645, 729, 798, 864, 924
Tru9I TTAA 8 cut(s) 194, 588, 602, 645, 729, 798, 864, 924
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 2 cut(s) 332, 718
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 6 cut(s) 272, 402, 800, 823, 928, 1032
Tth111I GACNNNGTC 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 524
XceI RCATGY 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.