AT3G54190

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001828
Physical Location & Seq
Reverse (-)
20061418 .. 20064161
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54190.1

Sequence Viewer

Length: 1404 bp
ATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGGAAGAAGAATTGTGGCTAAGAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAAGCTTCAACGAAGAGAAATCTCTTCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCAAGAGAGATTTCGTAACATGCGTCTCGTGGAGCAATATGATACTCACGATCCTAAAGGGCACTGTTTAGTTGCATTACCGTTTTTGATGAAGAGAACTAAAGTTATTGAGATTGTTGCTGCAAGGGACATTGTTTTTGCGCTTGCACATTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGTCGAACAAAAGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCATCAGGAGCTTGTTCTACAACAAGAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCTCTTTGAAATGCAGATCCACTAGAATTGAGTATATTCTGAGAGGTCAGCCGGATGCAGGGTTTGCTCTTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCAATGGAAAGGTGCTGACTTATTCTGCGCAGGACAGTGTATACAAGGTGTTTGATCTGAAAAACTACACCATGCTATATTCGATATCAGATAAAAATGTCCAGGAAATTAAAATCAGTCCAGGGATAATGTTATTGATCTTCAAGAGAGCTGCCAGTCATGTTCCTCTGAAGATTCTGTCGATAGAAGATGGCACTGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGACTTCATTGAACAATTCAATGAGAAACTTCTTGTTAAGCAAGAGAATGAGAATCTTCAAATTCTTGACGTCAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGTCTGCATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAACCGGAACGTTTCTGTGTGGAACTTTCGCGGAGAGCTCGTTACTTCCTTTGAGGACCATCTTCTATGGCATCCAGACTGTAACACTAATAATATCTACATTACAAGTGATCAAGATCTGATCATCTCGTACTGCAAAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCGGGATCAATCAATATCAGCAATATATTGACTGGGAAATGCTTAGCTAAAATAACACCAAGCAGTGGGCCTCCAAAAGATGATGAGAGCAGCAGCAGTAATTGTATGGGAAAGAACTCAAAGCAAAGAAGAAACGCTGTAGCTGAAGCTTTGGAAGACATAACCGCTCTTTTCTACGACGAAGAACGCAATGAGATATACACAGGAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

467

Amino Acids

53.42

Weight (kDa)

8.58

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 47 - 465 6.5e-225 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 894
Acc16I TGCGCA 2 cut(s) 325, 609
AccB7I CCANNNNNTGG 1 cut(s) 1226
AccBSI CCGCTC 1 cut(s) 1328
AccI GTMKAC 1 cut(s) 621
AccII CGCG 1 cut(s) 1020
AciI CCGC 4 cut(s) 159, 1020, 1163, 1326
AclI AACGTT 1 cut(s) 999
AclWI GGATC 3 cut(s) 206, 471, 1174
AcsI RAATTY 1 cut(s) 882
AcuI CTGAAG 3 cut(s) 432, 770, 1326
AcyI GRCGYC 1 cut(s) 891
AfaI GTAC 1 cut(s) 1121
AfiI CCNNNNNNNGG 3 cut(s) 41, 518, 1226
AgsI TTSAA 7 cut(s) 110, 469, 724, 793, 833, 841, 881
AjnI CCWGG 3 cut(s) 556, 681, 700
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
Alw21I GWGCWC 1 cut(s) 1029
Alw26I GTCTC 2 cut(s) 75, 191
AlwI GGATC 3 cut(s) 206, 471, 1174
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 3 cut(s) 554, 1229, 1378
ApeKI GCWGC 5 cut(s) 281, 326, 731, 1251, 1254
ApoI RAATTY 1 cut(s) 882
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspLEI GCGC 3 cut(s) 304, 326, 610
AspS9I GGNCC 3 cut(s) 1045, 1229, 1395
AsuHPI GGTGA 1 cut(s) 797
AvaII GGWCC 2 cut(s) 1045, 1395
BaeGI GKGCMC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 1029
BarI GAAGNNNNNNTAC 1 cut(s) 33
BauI CACGAG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 1323
Bbv12I GWGCWC 1 cut(s) 1029
BbvI GCAGC 5 cut(s) 268, 338, 718, 1263, 1266
BccI CCATC 3 cut(s) 74, 764, 1056
BceAI ACGGC 2 cut(s) 36, 1393
BciT130I CCWGG 3 cut(s) 558, 683, 702
BclI TGATCA 2 cut(s) 1099, 1110
BcoDI GTCTC 2 cut(s) 75, 191
BfaI CTAG 2 cut(s) 30, 483
BfmI CTRYAG 1 cut(s) 1299
BglII AGATCT 1 cut(s) 1105
BisI GCNGC 5 cut(s) 282, 327, 732, 1252, 1255
BlpI GCTNAGC 2 cut(s) 903, 1204
BlsI GCNGC 5 cut(s) 283, 328, 733, 1253, 1256
Bme1390I CCNGG 3 cut(s) 558, 683, 702
Bme18I GGWCC 2 cut(s) 1045, 1395
BmgT120I GGNCC 3 cut(s) 1045, 1229, 1395
BmiI GGNNCC 1 cut(s) 992
BmrFI CCNGG 3 cut(s) 558, 683, 702
BmrI ACTGGG 1 cut(s) 1203
BmsI GCATC 2 cut(s) 505, 1069
BmuI ACTGGG 1 cut(s) 1203
BpiI GAAGAC 1 cut(s) 1323
Bpu1102I GCTNAGC 2 cut(s) 903, 1204
BpuEI CTTGAG 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 1104
BsaHI GRCGYC 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 701
BsaWI WCCGGW 1 cut(s) 993
BsaXI ACNNNNNCTCC 2 cut(s) 1014, 1044
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 518, 1226
Bse1I ACTGG 3 cut(s) 735, 970, 1198
Bse3DI GCAATG 1 cut(s) 1357
Bse8I GATNNNNATC 1 cut(s) 1104
BseBI CCWGG 3 cut(s) 558, 683, 702
BseDI CCNNGG 1 cut(s) 701
BseGI GGATG 2 cut(s) 520, 1060
BseJI GATNNNNATC 1 cut(s) 1104
BseLI CCNNNNNNNGG 3 cut(s) 41, 518, 1226
BseMI GCAATG 1 cut(s) 1357
BseMII CTCAG 3 cut(s) 491, 894, 918
BseNI ACTGG 3 cut(s) 735, 970, 1198
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 5 cut(s) 268, 338, 718, 1263, 1266
Bsh1236I CGCG 1 cut(s) 1020
BshFI GGCC 3 cut(s) 556, 1231, 1380
BsiHKAI GWGCWC 1 cut(s) 1029
BsiSI CCGG 2 cut(s) 512, 994
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 41, 518, 1226
BsmAI GTCTC 2 cut(s) 75, 191
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 947
BsnI GGCC 3 cut(s) 556, 1231, 1380
Bso31I GGTCTC 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 225, 1029
Bsp1720I GCTNAGC 2 cut(s) 903, 1204
BspACI CCGC 4 cut(s) 159, 1020, 1163, 1326
BspANI GGCC 3 cut(s) 556, 1231, 1380
BspCNI CTCAG 3 cut(s) 492, 895, 919
BspFNI CGCG 1 cut(s) 1020
BspHI TCATGA 1 cut(s) 933
BspLI GGNNCC 1 cut(s) 992
BspPI GGATC 3 cut(s) 206, 471, 1174
BspTNI GGTCTC 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 1328
BsrDI GCAATG 1 cut(s) 1357
BsrI ACTGG 3 cut(s) 735, 970, 1198
BssECI CCNNGG 1 cut(s) 701
BssNAI GTATAC 1 cut(s) 622
BssNI GRCGYC 1 cut(s) 891
BssSI CACGAG 1 cut(s) 188
Bst1107I GTATAC 1 cut(s) 622
Bst2BI CACGAG 1 cut(s) 188
Bst2UI CCWGG 3 cut(s) 558, 683, 702
Bst4CI ACNGT 8 cut(s) 95, 227, 243, 433, 617, 778, 942, 1070
Bst6I CTCTTC 3 cut(s) 109, 130, 248
BstACI GRCGYC 1 cut(s) 891
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 25, 306
BstDEI CTNAG 5 cut(s) 60, 500, 903, 927, 1204
BstF5I GGATG 2 cut(s) 520, 1060
BstFNI CGCG 1 cut(s) 1020
BstHHI GCGC 3 cut(s) 304, 326, 610
BstMAI GTCTC 2 cut(s) 75, 191
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNI CCWGG 3 cut(s) 558, 683, 702
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 3 cut(s) 556, 681, 700
BstSFI CTRYAG 1 cut(s) 1299
BstSLI GKGCMC 1 cut(s) 225
BstUI CGCG 1 cut(s) 1020
BstV1I GCAGC 5 cut(s) 268, 338, 718, 1263, 1266
BstV2I GAAGAC 1 cut(s) 1323
BstX2I RGATCY 2 cut(s) 476, 1105
BstYI RGATCY 2 cut(s) 476, 1105
BstZ17I GTATAC 1 cut(s) 622
BsuRI GGCC 3 cut(s) 556, 1231, 1380
BtsCI GGATG 2 cut(s) 520, 1060
BtsI GCAGTG 1 cut(s) 1231
BtsIMutI CAGTG 6 cut(s) 100, 223, 622, 774, 1151, 1231
Cac8I GCNNGC 2 cut(s) 25, 306
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 1 cut(s) 933
CfoI GCGC 3 cut(s) 304, 326, 610
Cfr13I GGNCC 3 cut(s) 1045, 1229, 1395
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 1120
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 5 cut(s) 181, 652, 740, 934, 1388
CviQI GTAC 1 cut(s) 1120
DdeI CTNAG 5 cut(s) 60, 500, 903, 927, 1204
DraI TTTAAA 1 cut(s) 366
Eam1104I CTCTTC 3 cut(s) 109, 130, 248
EarI CTCTTC 3 cut(s) 109, 130, 248
Ecl136II GAGCTC 1 cut(s) 1027
Eco24I GRGCYC 1 cut(s) 1029
Eco31I GGTCTC 1 cut(s) 75
Eco32I GATATC 1 cut(s) 666
Eco47I GGWCC 2 cut(s) 1045, 1395
Eco53kI GAGCTC 1 cut(s) 1027
Eco57I CTGAAG 3 cut(s) 432, 770, 1326
EcoICRI GAGCTC 1 cut(s) 1027
EcoRII CCWGG 3 cut(s) 556, 681, 700
EcoRV GATATC 1 cut(s) 666
EcoT38I GRGCYC 1 cut(s) 1029
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 5 cut(s) 184, 655, 743, 937, 1391
FaqI GGGAC 1 cut(s) 302
FatI CATG 5 cut(s) 180, 651, 739, 933, 1387
FauI CCCGC 1 cut(s) 1156
FbaI TGATCA 2 cut(s) 1099, 1110
FblI GTMKAC 1 cut(s) 621
Fnu4HI GCNGC 5 cut(s) 282, 327, 732, 1252, 1255
FokI GGATG 2 cut(s) 527, 1047
FriOI GRGCYC 1 cut(s) 1029
Fsp4HI GCNGC 5 cut(s) 282, 327, 732, 1252, 1255
FspBI CTAG 2 cut(s) 30, 483
FspI TGCGCA 2 cut(s) 325, 609
GlaI GCGC 3 cut(s) 303, 325, 609
GluI GCNGC 5 cut(s) 282, 327, 732, 1252, 1255
HaeIII GGCC 3 cut(s) 556, 1231, 1380
HapII CCGG 2 cut(s) 512, 994
HgaI GACGC 1 cut(s) 173
HhaI GCGC 3 cut(s) 304, 326, 610
Hin1I GRCGYC 1 cut(s) 891
Hin1II CATG 5 cut(s) 184, 655, 743, 937, 1391
Hin6I GCGC 3 cut(s) 302, 324, 608
HinP1I GCGC 3 cut(s) 302, 324, 608
HincII GTYRAC 2 cut(s) 91, 823
HindII GTYRAC 2 cut(s) 91, 823
HindIII AAGCTT 2 cut(s) 104, 1308
HinfI GANTC 7 cut(s) 84, 341, 419, 536, 542, 754, 874
HpaII CCGG 2 cut(s) 512, 994
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 3 cut(s) 91, 622, 823
Hpy188I TCNGA 9 cut(s) 451, 501, 541, 639, 670, 750, 896, 981, 1110
Hpy8I GTNNAC 3 cut(s) 91, 622, 823
Hpy99I CGWCG 1 cut(s) 1343
HpyAV CCTTC 3 cut(s) 6, 799, 1148
HpyCH4III ACNGT 8 cut(s) 95, 227, 243, 433, 617, 778, 942, 1070
HpyCH4IV ACGT 2 cut(s) 891, 999
HpyCH4V TGCA 7 cut(s) 236, 284, 308, 474, 518, 947, 1125
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 5 cut(s) 60, 500, 903, 927, 1204
HpySE526I ACGT 2 cut(s) 891, 999
Hsp92I GRCGYC 1 cut(s) 891
Hsp92II CATG 5 cut(s) 184, 655, 743, 937, 1391
HspAI GCGC 3 cut(s) 302, 324, 608
Ksp22I TGATCA 2 cut(s) 1099, 1110
LmnI GCTCC 2 cut(s) 193, 393
Lsp1109I GCAGC 5 cut(s) 268, 338, 718, 1263, 1266
LweI GCATC 2 cut(s) 505, 1069
MaeI CTAG 2 cut(s) 30, 483
MaeII ACGT 2 cut(s) 891, 999
MaeIII GTNAC 3 cut(s) 176, 1030, 1070
MbiI CCGCTC 1 cut(s) 1328
MfeI CAATTG 1 cut(s) 1399
MflI RGATCY 2 cut(s) 476, 1105
MhlI GDGCHC 2 cut(s) 225, 1029
MluCI AATT 8 cut(s) 51, 454, 486, 687, 836, 882, 1261, 1399
MlyI GAGTC 2 cut(s) 350, 545
MnlI CCTC 4 cut(s) 497, 756, 1036, 1242
MseI TTAA 5 cut(s) 99, 365, 548, 690, 858
MslI CAYNNNNRTG 2 cut(s) 315, 550
MspI CCGG 2 cut(s) 512, 994
MspR9I CCNGG 3 cut(s) 558, 683, 702
MunI CAATTG 1 cut(s) 1399
Mva1269I GAATGC 1 cut(s) 947
MvaI CCWGG 3 cut(s) 558, 683, 702
MvnI CGCG 1 cut(s) 1020
MwoI GCNNNNNNNGC 1 cut(s) 524
NlaIII CATG 5 cut(s) 184, 655, 743, 937, 1391
NlaIV GGNNCC 1 cut(s) 992
NsbI TGCGCA 2 cut(s) 325, 609
NspI RCATGY 1 cut(s) 184
PagI TCATGA 1 cut(s) 933
PcsI WCGNNNNNNNCGW 2 cut(s) 136, 181
PctI GAATGC 1 cut(s) 947
PfeI GAWTC 5 cut(s) 84, 419, 542, 754, 874
PflFI GACNNNGTC 1 cut(s) 940
PflMI CCANNNNNTGG 1 cut(s) 1226
PfoI TCCNGGA 1 cut(s) 681
PkrI GCNGC 5 cut(s) 283, 328, 733, 1253, 1256
PleI GAGTC 2 cut(s) 349, 544
PpsI GAGTC 2 cut(s) 349, 544
Psp124BI GAGCTC 1 cut(s) 1029
Psp1406I AACGTT 1 cut(s) 999
Psp6I CCWGG 3 cut(s) 556, 681, 700
PspGI CCWGG 3 cut(s) 556, 681, 700
PspN4I GGNNCC 1 cut(s) 992
PspPI GGNCC 3 cut(s) 1045, 1229, 1395
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 476, 1105
PsyI GACNNNGTC 1 cut(s) 940
RsaI GTAC 1 cut(s) 1121
RsaNI GTAC 1 cut(s) 1120
RseI CAYNNNNRTG 2 cut(s) 315, 550
SacI GAGCTC 1 cut(s) 1029
SaqAI TTAA 5 cut(s) 99, 365, 548, 690, 858
SatI GCNGC 5 cut(s) 282, 327, 732, 1252, 1255
Sau96I GGNCC 3 cut(s) 1045, 1229, 1395
SchI GAGTC 2 cut(s) 350, 545
ScrFI CCNGG 3 cut(s) 558, 683, 702
SduI GDGCHC 2 cut(s) 225, 1029
SfaNI GCATC 2 cut(s) 505, 1069
SfcI CTRYAG 1 cut(s) 1299
SinI GGWCC 2 cut(s) 1045, 1395
SmiMI CAYNNNNRTG 2 cut(s) 315, 550
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 8 cut(s) 51, 454, 486, 687, 836, 882, 1261, 1399
SsiI CCGC 4 cut(s) 159, 1020, 1163, 1326
SspMI CTAG 2 cut(s) 30, 483
SstI GAGCTC 1 cut(s) 1029
StyD4I CCNGG 3 cut(s) 556, 681, 700
TaaI ACNGT 8 cut(s) 95, 227, 243, 433, 617, 778, 942, 1070
TaiI ACGT 2 cut(s) 894, 1002
TaqI TCGA 5 cut(s) 73, 139, 344, 662, 761
TasI AATT 8 cut(s) 51, 454, 486, 687, 836, 882, 1261, 1399
TfiI GAWTC 5 cut(s) 84, 419, 542, 754, 874
Tru1I TTAA 5 cut(s) 99, 365, 548, 690, 858
Tru9I TTAA 5 cut(s) 99, 365, 548, 690, 858
TscAI CASTG 6 cut(s) 100, 230, 622, 781, 1151, 1231
TseI GCWGC 5 cut(s) 281, 326, 731, 1251, 1254
TspDTI ATGAA 6 cut(s) 266, 396, 817, 922, 940, 1376
TspRI CASTG 6 cut(s) 100, 230, 622, 781, 1151, 1231
Tth111I GACNNNGTC 1 cut(s) 940
Van91I CCANNNNNTGG 1 cut(s) 1226
VpaK11BI GGWCC 2 cut(s) 1045, 1395
XapI RAATTY 1 cut(s) 882
XceI RCATGY 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 621
XspI CTAG 2 cut(s) 30, 483
ZraI GACGTC 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.