Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0001828

Physical Location & Seq

Genomic Coordinates Reverse (-)

54420 .. 58461

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000240.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atggaagtggggaggaggatatcggcgagtcctcggccgtgctccggccggcgagtggtggcgaggaagaagagggccgccggagatgggttcgtcaacagcgtcaagaagcttcagaggcgtgagatttgttcaaagcgtgatcgagcctttgggatgagcaatgcccaagagagattccgcaacatgcacttgatggaggaatatgatactcatgatcccaagggtcatttgtcttccaaattgccttttctgatgaagaggacaaaggtaattgagatagttgcggcacgtgacatagtcttcgctcttgctcattctggtgtatgtgcagcttttagtagagagacaaatgagaggatctgtttcttgaatgttagtcctgatgaagttatccgaagcttgttctataacaagaacaatgattcactcatcacagtttctgtctatgcttcggacaacttcagctctttgaaatgcagatctacaaggattgagtatataaggaggggcaagccagatgctggttttgctctttttgagtccgagtccttgaagtggcctgggtttgtagagtttgatgatgttaatggcaaggtcttaacatactctgcacaggatagtatatataaggtgtttgaccttaaaaactattccatgctttactctatatcagacaaaaatgtacaagaaatcaagatcagtccaggtatcatgctgctgatttttaatagagctagtagccatgttccgctgaagattctgtcaatagaagatggcacagttctcaaagcgtttaatcatctgcttcatcgaaataagaaggtggatttcatagaacaattcaacgaaaagcttctcgttaagcaagaaaatgagaatcttcagattcttgatgttcgaaatgcggagctgatggaagttaacagagctgagttcatgactccatcagcatttatctttctgtatgagaaccagctattcctgacattcagaaataggactgtggccgtctggaactttcgtggagaacttgtaacttcatttgaggatcacttgttgtggcatcctgactgcaataccaataacatttatataacaagtgatcaggatttgatcatatcctactgcaaagctgattctgatgatcattggatggaaccaactgctggttctatacatgtcagcaatatcttaaccgggaaatgcctggccaaaataaatgctagcaatgccggtcccaaggttgatgagtgtagcagcagttctagcacctcaaggaagcggatcaactcatctctagtgagaagcactgtagctgaggccttggaagacatcactgcccttttttatgatgaagaacgtaatgagatatatactggaaataggcatggtcttgttcatgtgtggtcaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

472

Amino Acids

53.9

Weight (kDa)

8.44

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38630 AT2G38630 AT2G38630 AT3G54190
fragaria_vesca	FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_7g26350 FvH4_7g26350 FvH4_7g26350 FvH4_7g26350
malus_domestica	MD01G1172600.v1.1 MD04G1179700.v1.1 MD07G1238900.v1.1 MD12G1194800.v1.1
prunus_persica	Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.6G299700_v2.0.a1 Prupe.6G299700_v2.0.a1
pyrus_communis	pycom01g18410 pycom04g15870 pycom07g21490 pycom12g18100
rosa_chinensis	RchiOBHm_Chr1g0372891 RchiOBHm_Chr3g0459581
rosa_laevigata	RLG00000025078 RLG00000026868
rosa_multiflora	Rmu_sc0000240.1_g000010 Rmu_sc0006531.1_g000003 Rmu_sc0011206.1_g000004 Rmu_sc0034641.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284650 Rroxscaffold_6G00420170
rosa_rugosa	Rorug01G0374600 Rorug01G0374700 Rorug03G0036500
rosa_samantha	Rh1CG360500 Rh1DG378000 Rh3AG095400 Rh3CG099700
rosa_wichuraiana	Rw0G013860 Rw0G017570 Rw1G033760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	524, 1169
AciI	CCGC	6 cut(s)	78, 181, 287, 752, 908, 1285
AclWI	GGATC	4 cut(s)	212, 368, 1059, 1295
AcoI	YGGCCR	4 cut(s)	35, 46, 1008, 1212
AcuI	CTGAAG	4 cut(s)	98, 448, 776, 869
AcvI	CACGTG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	687
AfiI	CCNNNNNNNGG	6 cut(s)	44, 55, 87, 524, 558, 1169
AflIII	ACRYGT	1 cut(s)	1180
AgsI	TTSAA	5 cut(s)	135, 373, 475, 556, 847
AjnI	CCWGG	3 cut(s)	562, 706, 1209
AjuI	GAANNNNNNNTTGG	2 cut(s)	1156, 1188
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	4 cut(s)	212, 368, 1059, 1295
AlwNI	CAGNNNCTG	2 cut(s)	443, 524
AoxI	GGCC	7 cut(s)	35, 46, 75, 560, 1008, 1212, 1323
ApeKI	GCWGC	3 cut(s)	332, 718, 1260
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
Asp700I	GAANNNNTTC	1 cut(s)	855
AspS9I	GGNCC	2 cut(s)	75, 1238
AsuC2I	CCSGG	1 cut(s)	1201
AsuII	TTCGAA	1 cut(s)	901
AsuNHI	GCTAGC	1 cut(s)	1226
AvaII	GGWCC	1 cut(s)	1238
BalI	TGGCCA	1 cut(s)	1214
BbrPI	CACGTG	1 cut(s)	293
BbsI	GAAGAC	3 cut(s)	228, 295, 1338
Bbv12I	GWGCWC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	1320
BbvI	GCAGC	3 cut(s)	344, 705, 1272
BccI	CCATC	6 cut(s)	80, 190, 770, 910, 955, 1150
BceAI	ACGGC	2 cut(s)	22, 995
BciT130I	CCWGG	3 cut(s)	564, 708, 1211
BclI	TGATCA	3 cut(s)	1105, 1116, 1147
BcnI	CCSGG	1 cut(s)	1201
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	4 cut(s)	738, 1227, 1269, 1301
BfmI	CTRYAG	1 cut(s)	1314
BglII	AGATCT	1 cut(s)	482
BisI	GCNGC	5 cut(s)	78, 288, 333, 719, 1261
BlsI	GCNGC	5 cut(s)	79, 289, 334, 720, 1262
Bme1390I	CCNGG	4 cut(s)	564, 708, 1201, 1211
Bme18I	GGWCC	1 cut(s)	1238
BmgT120I	GGNCC	2 cut(s)	75, 1238
BmiI	GGNNCC	2 cut(s)	1161, 1240
BmrFI	CCNGG	4 cut(s)	564, 708, 1201, 1211
BmsI	GCATC	2 cut(s)	511, 1075
BmtI	GCTAGC	1 cut(s)	1230
BpiI	GAAGAC	3 cut(s)	228, 295, 1338
Bpu10I	CCTNAGC	1 cut(s)	1320
Bpu14I	TTCGAA	1 cut(s)	901
BpuEI	CTTGAG	1 cut(s)	1261
BpuMI	CCSGG	1 cut(s)	1201
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	5 cut(s)	32, 222, 563, 1242, 1326
BsaXI	ACNNNNNCTCC	2 cut(s)	1020, 1050
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 55, 87, 524, 558, 1169
Bse118I	RCCGGY	2 cut(s)	48, 1235
Bse1I	ACTGG	1 cut(s)	1384
Bse3DI	GCAATG	2 cut(s)	169, 1237
BseBI	CCWGG	3 cut(s)	564, 708, 1211
BseDI	CCNNGG	5 cut(s)	32, 222, 563, 1242, 1326
BseGI	GGATG	3 cut(s)	162, 1066, 1161
BseLI	CCNNNNNNNGG	6 cut(s)	44, 55, 87, 524, 558, 1169
BseMI	GCAATG	2 cut(s)	169, 1237
BseMII	CTCAG	2 cut(s)	924, 1311
BseNI	ACTGG	1 cut(s)	1384
BseRI	GAGGAG	1 cut(s)	28
BseX3I	CGGCCG	2 cut(s)	35, 46
BseXI	GCAGC	3 cut(s)	344, 705, 1272
BsgI	GTGCAG	2 cut(s)	351, 597
Bsh1285I	CGRYCG	2 cut(s)	38, 49
BshFI	GGCC	7 cut(s)	37, 48, 77, 562, 1010, 1214, 1325
BsiEI	CGRYCG	2 cut(s)	38, 49
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	5 cut(s)	45, 49, 81, 1200, 1236
BslFI	GGGAC	1 cut(s)	1224
BslI	CCNNNNNNNGG	6 cut(s)	44, 55, 87, 524, 558, 1169
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	1224
BsnI	GGCC	7 cut(s)	37, 48, 77, 562, 1010, 1214, 1325
Bsp119I	TTCGAA	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	685
BspACI	CCGC	6 cut(s)	78, 181, 287, 752, 908, 1285
BspANI	GGCC	7 cut(s)	37, 48, 77, 562, 1010, 1214, 1325
BspCNI	CTCAG	2 cut(s)	925, 1312
BspHI	TCATGA	2 cut(s)	214, 939
BspLI	GGNNCC	2 cut(s)	1161, 1240
BspOI	GCTAGC	1 cut(s)	1230
BspPI	GGATC	4 cut(s)	212, 368, 1059, 1295
BspT104I	TTCGAA	1 cut(s)	901
BsrDI	GCAATG	2 cut(s)	169, 1237
BsrFI	RCCGGY	2 cut(s)	48, 1235
BsrGI	TGTACA	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	1384
BssAI	RCCGGY	2 cut(s)	48, 1235
BssECI	CCNNGG	5 cut(s)	32, 222, 563, 1242, 1326
BssT1I	CCWWGG	3 cut(s)	222, 1242, 1326
Bst2UI	CCWGG	3 cut(s)	564, 708, 1211
Bst4CI	ACNGT	4 cut(s)	439, 784, 1006, 1315
Bst6I	CTCTTC	2 cut(s)	65, 254
BstAUI	TGTACA	1 cut(s)	685
BstBAI	YACGTR	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	901
BstC8I	GCNNGC	3 cut(s)	50, 515, 1228
BstDEI	CTNAG	2 cut(s)	933, 1320
BstF5I	GGATG	3 cut(s)	162, 1066, 1161
BstMAI	GTCTC	1 cut(s)	341
BstMCI	CGRYCG	2 cut(s)	38, 49
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 530, 1232, 1269
BstNI	CCWGG	3 cut(s)	564, 708, 1211
BstNSI	RCATGY	2 cut(s)	190, 1184
BstSCI	CCNGG	4 cut(s)	562, 706, 1199, 1209
BstSFI	CTRYAG	1 cut(s)	1314
BstV1I	GCAGC	3 cut(s)	344, 705, 1272
BstV2I	GAAGAC	3 cut(s)	228, 295, 1338
BstX2I	RGATCY	2 cut(s)	360, 482
BstYI	RGATCY	2 cut(s)	360, 482
BstZI	CGGCCG	2 cut(s)	35, 46
BsuRI	GGCC	7 cut(s)	37, 48, 77, 562, 1010, 1214, 1325
BtsCI	GGATG	3 cut(s)	162, 1066, 1161
BtsI	GCAGTG	1 cut(s)	1338
BtsIMutI	CAGTG	2 cut(s)	1311, 1338
Cac8I	GCNNGC	3 cut(s)	50, 515, 1228
CaiI	CAGNNNCTG	2 cut(s)	443, 524
CciI	TCATGA	2 cut(s)	214, 939
Cfr10I	RCCGGY	2 cut(s)	48, 1235
Cfr13I	GGNCC	2 cut(s)	75, 1238
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	686
CviAII	CATG	9 cut(s)	187, 215, 658, 715, 746, 940, 1181, 1391, 1403
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	2 cut(s)	933, 1320
EaeI	YGGCCR	4 cut(s)	35, 46, 1008, 1212
EagI	CGGCCG	2 cut(s)	35, 46
Eam1104I	CTCTTC	2 cut(s)	65, 254
EarI	CTCTTC	2 cut(s)	65, 254
EclXI	CGGCCG	2 cut(s)	35, 46
Eco130I	CCWWGG	3 cut(s)	222, 1242, 1326
Eco147I	AGGCCT	1 cut(s)	1325
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	1238
Eco52I	CGGCCG	2 cut(s)	35, 46
Eco57I	CTGAAG	4 cut(s)	98, 448, 776, 869
Eco72I	CACGTG	1 cut(s)	293
EcoRII	CCWGG	3 cut(s)	562, 706, 1209
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	3 cut(s)	222, 1242, 1326
ErhI	CCWWGG	3 cut(s)	222, 1242, 1326
FaeI	CATG	9 cut(s)	190, 218, 661, 718, 749, 943, 1184, 1394, 1406
FaqI	GGGAC	1 cut(s)	1224
FatI	CATG	9 cut(s)	186, 214, 657, 714, 745, 939, 1180, 1390, 1402
FbaI	TGATCA	3 cut(s)	1105, 1116, 1147
Fnu4HI	GCNGC	5 cut(s)	78, 288, 333, 719, 1261
FokI	GGATG	3 cut(s)	169, 1053, 1168
Fsp4HI	GCNGC	5 cut(s)	78, 288, 333, 719, 1261
FspBI	CTAG	4 cut(s)	738, 1227, 1269, 1301
GluI	GCNGC	5 cut(s)	78, 288, 333, 719, 1261
HaeIII	GGCC	7 cut(s)	37, 48, 77, 562, 1010, 1214, 1325
HapII	CCGG	5 cut(s)	45, 49, 81, 1200, 1236
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	9 cut(s)	190, 218, 661, 718, 749, 943, 1184, 1394, 1406
HincII	GTYRAC	2 cut(s)	97, 925
HindII	GTYRAC	2 cut(s)	97, 925
HindIII	AAGCTT	3 cut(s)	110, 400, 854
HpaI	GTTAAC	1 cut(s)	925
HpaII	CCGG	5 cut(s)	45, 49, 81, 1200, 1236
Hpy166II	GTNNAC	2 cut(s)	97, 925
Hpy188I	TCNGA	9 cut(s)	117, 255, 398, 457, 547, 676, 888, 995, 1144
Hpy8I	GTNNAC	2 cut(s)	97, 925
HpyAV	CCTTC	1 cut(s)	817
HpyCH4III	ACNGT	4 cut(s)	439, 784, 1006, 1315
HpyCH4IV	ACGT	2 cut(s)	292, 1363
HpyCH4V	TGCA	6 cut(s)	190, 332, 480, 614, 1077, 1131
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 530, 1232, 1269
HpyF3I	CTNAG	2 cut(s)	933, 1320
HpySE526I	ACGT	2 cut(s)	292, 1363
Hsp92II	CATG	9 cut(s)	190, 218, 661, 718, 749, 943, 1184, 1394, 1406
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Ksp22I	TGATCA	3 cut(s)	1105, 1116, 1147
KspAI	GTTAAC	1 cut(s)	925
LmnI	GCTCC	2 cut(s)	47, 910
Lsp1109I	GCAGC	3 cut(s)	344, 705, 1272
LweI	GCATC	2 cut(s)	511, 1075
MaeI	CTAG	4 cut(s)	738, 1227, 1269, 1301
MaeII	ACGT	2 cut(s)	292, 1363
MaeIII	GTNAC	2 cut(s)	293, 1036
MflI	RGATCY	2 cut(s)	360, 482
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	1214
MluCI	AATT	3 cut(s)	242, 273, 842
MluNI	TGGCCA	1 cut(s)	1214
MlyI	GAGTC	4 cut(s)	37, 551, 557, 937
Mox20I	TGGCCA	1 cut(s)	1214
MroNI	GCCGGC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	1214
MseI	TTAA	8 cut(s)	588, 602, 645, 729, 798, 864, 924, 1196
MslI	CAYNNNNRTG	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	1214
MspA1I	CMGCKG	1 cut(s)	754
MspI	CCGG	5 cut(s)	45, 49, 81, 1200, 1236
MspR9I	CCNGG	4 cut(s)	564, 708, 1201, 1211
MvaI	CCWGG	3 cut(s)	564, 708, 1211
MwoI	GCNNNNNNNGC	4 cut(s)	118, 530, 1232, 1269
NaeI	GCCGGC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	1201
NgoMIV	GCCGGC	1 cut(s)	48
NheI	GCTAGC	1 cut(s)	1226
NlaIII	CATG	9 cut(s)	190, 218, 661, 718, 749, 943, 1184, 1394, 1406
NlaIV	GGNNCC	2 cut(s)	1161, 1240
NmeAIII	GCCGAG	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	2 cut(s)	190, 1184
NspV	TTCGAA	1 cut(s)	901
PagI	TCATGA	2 cut(s)	214, 939
PceI	AGGCCT	1 cut(s)	1325
PciI	ACATGT	1 cut(s)	1180
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	6 cut(s)	177, 425, 760, 880, 889, 1139
PflFI	GACNNNGTC	1 cut(s)	299
PflMI	CCANNNNNTGG	2 cut(s)	524, 1169
PkrI	GCNGC	5 cut(s)	79, 289, 334, 720, 1262
PleI	GAGTC	4 cut(s)	36, 550, 556, 937
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	4 cut(s)	36, 550, 556, 937
Ppu21I	YACGTR	1 cut(s)	293
PscI	ACATGT	1 cut(s)	1180
Psp6I	CCWGG	3 cut(s)	562, 706, 1209
PspCI	CACGTG	1 cut(s)	293
PspGI	CCWGG	3 cut(s)	562, 706, 1209
PspN4I	GGNNCC	2 cut(s)	1161, 1240
PspPI	GGNCC	2 cut(s)	75, 1238
PsrI	GAACNNNNNNTAC	2 cut(s)	1249, 1281
PstNI	CAGNNNCTG	2 cut(s)	443, 524
PsuI	RGATCY	2 cut(s)	360, 482
PsyI	GACNNNGTC	1 cut(s)	299
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	8 cut(s)	588, 602, 645, 729, 798, 864, 924, 1196
SatI	GCNGC	5 cut(s)	78, 288, 333, 719, 1261
Sau96I	GGNCC	2 cut(s)	75, 1238
SchI	GAGTC	4 cut(s)	37, 551, 557, 937
ScrFI	CCNGG	4 cut(s)	564, 708, 1201, 1211
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	2 cut(s)	511, 1075
SfcI	CTRYAG	1 cut(s)	1314
SfuI	TTCGAA	1 cut(s)	901
SinI	GGWCC	1 cut(s)	1238
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	1276
SmoI	CTYRAG	1 cut(s)	1276
Sse9I	AATT	3 cut(s)	242, 273, 842
SseBI	AGGCCT	1 cut(s)	1325
SsiI	CCGC	6 cut(s)	78, 181, 287, 752, 908, 1285
SspMI	CTAG	4 cut(s)	738, 1227, 1269, 1301
StuI	AGGCCT	1 cut(s)	1325
StyD4I	CCNGG	4 cut(s)	562, 706, 1199, 1209
StyI	CCWWGG	3 cut(s)	222, 1242, 1326
TaaI	ACNGT	4 cut(s)	439, 784, 1006, 1315
TaiI	ACGT	2 cut(s)	295, 1366
TaqI	TCGA	3 cut(s)	145, 814, 901
TasI	AATT	3 cut(s)	242, 273, 842
TatI	WGTACW	1 cut(s)	685
TauI	GCSGC	2 cut(s)	80, 290
TfiI	GAWTC	6 cut(s)	177, 425, 760, 880, 889, 1139
Tru1I	TTAA	8 cut(s)	588, 602, 645, 729, 798, 864, 924, 1196
Tru9I	TTAA	8 cut(s)	588, 602, 645, 729, 798, 864, 924, 1196
TscAI	CASTG	2 cut(s)	1318, 1345
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	3 cut(s)	332, 718, 1260
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	8 cut(s)	272, 402, 800, 823, 928, 1032, 1371, 1391
TspRI	CASTG	2 cut(s)	1318, 1345
Tth111I	GACNNNGTC	1 cut(s)	299
Van91I	CCANNNNNTGG	2 cut(s)	524, 1169
VpaK11BI	GGWCC	1 cut(s)	1238
XceI	RCATGY	2 cut(s)	190, 1184
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	4 cut(s)	738, 1227, 1269, 1301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.