Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001828

Physical Location & Seq

Genomic Coordinates Forward (+)

23181887 .. 23184197

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21490.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAAGGGGGAAGGAGAATCTCGGCGAGTCCTCGGCCTTGCAACGGTAGGAGGGTGGTGGCGAAGAAACGACCTCGTATTGGTGGGGTTGATGGGTTCGTCAACAGCGTTAAGAAGCTCCAGAGGCGCGAAATCAGCTCCAAGCGCGACCGTGCTTTTACTATGAGCGATGCCCAGGAGAGGTTTCGTAATATCCGCCTCCAGGAGGAATATGATACGCATGATCCTAAGGGTCATTGTGCCATGGTTCTGCCTTTCCTGCGAAAGAGGTCCAAAATTATTGAAATTGTAGCAGCACGTGACATTGTGTTTGCCCTCGCACAATCCGGTGTTTGTGCAGCATTTAGCCGAGAAACCAACCAGAGAATATGCTTTCTGAATGTCAGTCCTGATGAAGTGATAAGAAGCTTGTTTTATAATAAAAACAATGACTCACTTATCACTGTTTCGGTTTATGCCTCAGACAACTTCAGTTCTTTGAAATGCAGAAGCACAAGGATTGAATACATAAGAAGGGGTAAACCAGATGCTGGGTTTGCTCTTTTTGAATCCGAGTCACTGAAATGGCCTGGTTTTGTAGAGTTTGATGATGTAAATGGGAAGGTTCTTACTTATTCTGCACAGGATAGTATATACAAGGTGTTTGATCTGAAAAACTACACAATGTTGTACTCCATATCGGATAAGAATGTCCAAGAGATTAAGATCAGCCCTGGGATCATGCTGTTGATTTTTACTAAAGCTAGTAGCCATGTTCCTCTTAAGATTCTGTCTATAGAGGATGGTACTGTCCTCAAATCCTTTAACCATCTCCTTCATCGGAATAAGAAGGTGGATTTCATCGAACAGTTCAACGAAAAGCTTCTTGTAAAGCAAGAAAATGAGAACCTTCAAATTCTTGATGTTCGCAATTTTGAGATGACAGAAGTAAGCAGAACTCAATTCATGACACCATCAGCCTTCATATTTCTGTATGAGAATCAGTTATTCCTGACGTTTCGGAATCGAACCGTGGCTGTTTGGAACTTTAGAGGAGAACTTGTGACTTCGTTTGAGGATCGATCTTTTGTGGCATCCCGACTGCAATACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

42.09

Weight (kDa)

9.55

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38630 AT2G38630 AT2G38630 AT3G54190
fragaria_vesca	FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_6g09240 FvH4_7g26350 FvH4_7g26350 FvH4_7g26350 FvH4_7g26350
malus_domestica	MD01G1172600.v1.1 MD04G1179700.v1.1 MD07G1238900.v1.1 MD12G1194800.v1.1
prunus_persica	Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.2G267700_v2.0.a1 Prupe.6G299700_v2.0.a1 Prupe.6G299700_v2.0.a1
pyrus_communis	pycom01g18410 pycom04g15870 pycom07g21490 pycom12g18100
rosa_chinensis	RchiOBHm_Chr1g0372891 RchiOBHm_Chr3g0459581
rosa_laevigata	RLG00000025078 RLG00000026868
rosa_multiflora	Rmu_sc0000240.1_g000010 Rmu_sc0006531.1_g000003 Rmu_sc0011206.1_g000004 Rmu_sc0034641.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284650 Rroxscaffold_6G00420170
rosa_rugosa	Rorug01G0374600 Rorug01G0374700 Rorug03G0036500
rosa_samantha	Rh1CG360500 Rh1DG378000 Rh3AG095400 Rh3CG099700
rosa_wichuraiana	Rw0G013860 Rw0G017570 Rw1G033760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	530
AccII	CGCG	2 cut(s)	129, 147
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	3 cut(s)	218, 725, 1065
AcsI	RAATTY	1 cut(s)	894
AcuI	CTGAAG	1 cut(s)	454
AcvI	CACGTG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	671, 787
AfiI	CCNNNNNNNGG	6 cut(s)	44, 80, 180, 202, 205, 530
AflII	CTTAAG	1 cut(s)	761
AgsI	TTSAA	6 cut(s)	284, 481, 503, 548, 853, 893
AjnI	CCWGG	4 cut(s)	174, 201, 568, 712
AluBI	AGCT	5 cut(s)	118, 138, 408, 743, 862
AluI	AGCT	5 cut(s)	118, 138, 408, 743, 862
AlwI	GGATC	3 cut(s)	218, 725, 1065
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	35, 566
ApeKI	GCWGC	2 cut(s)	293, 338
ApoI	RAATTY	1 cut(s)	894
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
Asp700I	GAANNNNTTC	1 cut(s)	861
AspLEI	GCGC	2 cut(s)	129, 147
AspS9I	GGNCC	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	270
AxyI	CCTNAGG	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	305, 350
BccI	CCATC	4 cut(s)	86, 776, 816, 961
BciT130I	CCWGG	4 cut(s)	176, 203, 570, 714
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	774
BfrI	CTTAAG	1 cut(s)	761
BisI	GCNGC	2 cut(s)	294, 339
BlsI	GCNGC	2 cut(s)	295, 340
Bme1390I	CCNGG	4 cut(s)	176, 203, 570, 714
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmrFI	CCNGG	4 cut(s)	176, 203, 570, 714
BmsI	GCATC	3 cut(s)	160, 517, 1082
BpmI	CTGGAG	2 cut(s)	104, 185
Bsa29I	ATCGAT	1 cut(s)	1060
BsaAI	YACGTR	1 cut(s)	299
BsaBI	GATNNNNATC	1 cut(s)	704
BsaJI	CCNNGG	6 cut(s)	32, 174, 243, 712, 713, 1011
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	1026, 1056
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 80, 180, 202, 205, 530
Bse21I	CCTNAGG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	704
BseBI	CCWGG	4 cut(s)	176, 203, 570, 714
BseCI	ATCGAT	1 cut(s)	1060
BseDI	CCNNGG	6 cut(s)	32, 174, 243, 712, 713, 1011
BseGI	GGATG	2 cut(s)	787, 1073
BseJI	GATNNNNATC	1 cut(s)	704
BseLI	CCNNNNNNNGG	6 cut(s)	44, 80, 180, 202, 205, 530
BseMII	CTCAG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	1047
BseXI	GCAGC	2 cut(s)	305, 350
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	2 cut(s)	357, 603
Bsh1236I	CGCG	2 cut(s)	129, 147
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	37, 568
BshVI	ATCGAT	1 cut(s)	1060
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	6 cut(s)	44, 80, 180, 202, 205, 530
BsnI	GGCC	2 cut(s)	37, 568
Bsp143I	GATC	6 cut(s)	223, 646, 705, 717, 1057, 1061
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	37, 568
BspCNI	CTCAG	1 cut(s)	473
BspDI	ATCGAT	1 cut(s)	1060
BspFNI	CGCG	2 cut(s)	129, 147
BspHI	TCATGA	1 cut(s)	945
BspPI	GGATC	3 cut(s)	218, 725, 1065
BspTI	CTTAAG	1 cut(s)	761
BssECI	CCNNGG	6 cut(s)	32, 174, 243, 712, 713, 1011
BssMI	GATC	6 cut(s)	223, 646, 705, 717, 1057, 1061
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	4 cut(s)	176, 203, 570, 714
Bst4CI	ACNGT	6 cut(s)	47, 152, 445, 790, 849, 1012
BstAFI	CTTAAG	1 cut(s)	761
BstBAI	YACGTR	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	228, 460
BstDSI	CCRYGG	2 cut(s)	243, 1011
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	787, 1073
BstFNI	CGCG	2 cut(s)	129, 147
BstHHI	GCGC	2 cut(s)	129, 147
BstKTI	GATC	6 cut(s)	226, 649, 708, 720, 1060, 1064
BstMBI	GATC	6 cut(s)	223, 646, 705, 717, 1057, 1061
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 135, 144, 259, 536
BstNI	CCWGG	4 cut(s)	176, 203, 570, 714
BstSCI	CCNGG	4 cut(s)	174, 201, 568, 712
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	2 cut(s)	129, 147
BstV1I	GCAGC	2 cut(s)	305, 350
Bsu15I	ATCGAT	1 cut(s)	1060
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	37, 568
BsuTUI	ATCGAT	1 cut(s)	1060
BtgI	CCRYGG	2 cut(s)	243, 1011
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	787, 1073
BtsIMutI	CAGTG	2 cut(s)	441, 557
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	2 cut(s)	129, 147
Cfr13I	GGNCC	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	1060
Csp6I	GTAC	2 cut(s)	670, 786
CviAII	CATG	5 cut(s)	221, 244, 721, 752, 946
CviQI	GTAC	2 cut(s)	670, 786
DdeI	CTNAG	2 cut(s)	228, 460
DpnI	GATC	6 cut(s)	225, 648, 707, 719, 1059, 1063
DpnII	GATC	6 cut(s)	223, 646, 705, 717, 1057, 1061
EciI	GGCGGA	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	454
Eco72I	CACGTG	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	228
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoRII	CCWGG	4 cut(s)	174, 201, 568, 712
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	5 cut(s)	224, 247, 724, 755, 949
FatI	CATG	5 cut(s)	220, 243, 720, 751, 945
Fnu4HI	GCNGC	2 cut(s)	294, 339
FokI	GGATG	2 cut(s)	794, 1060
Fsp4HI	GCNGC	2 cut(s)	294, 339
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	2 cut(s)	128, 146
GluI	GCNGC	2 cut(s)	294, 339
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	2 cut(s)	104, 185
HaeIII	GGCC	2 cut(s)	37, 568
HapII	CCGG	1 cut(s)	327
HhaI	GCGC	2 cut(s)	129, 147
Hin1II	CATG	5 cut(s)	224, 247, 724, 755, 949
Hin6I	GCGC	2 cut(s)	127, 145
HinP1I	GCGC	2 cut(s)	127, 145
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	2 cut(s)	406, 860
HinfI	GANTC	8 cut(s)	18, 28, 431, 548, 554, 766, 979, 1003
HpaII	CCGG	1 cut(s)	327
Hpy166II	GTNNAC	2 cut(s)	103, 521
Hpy188I	TCNGA	7 cut(s)	378, 463, 553, 651, 682, 822, 1002
Hpy188III	TCNNGA	6 cut(s)	121, 389, 899, 946, 991, 1077
Hpy8I	GTNNAC	2 cut(s)	103, 521
HpyAV	CCTTC	7 cut(s)	6, 507, 595, 823, 824, 899, 970
HpyCH4III	ACNGT	6 cut(s)	47, 152, 445, 790, 849, 1012
HpyCH4IV	ACGT	2 cut(s)	298, 995
HpyCH4V	TGCA	5 cut(s)	42, 338, 486, 620, 1084
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 135, 144, 259, 536
HpyF3I	CTNAG	2 cut(s)	228, 460
HpySE526I	ACGT	2 cut(s)	298, 995
Hsp92II	CATG	5 cut(s)	224, 247, 724, 755, 949
HspAI	GCGC	2 cut(s)	127, 145
Kzo9I	GATC	6 cut(s)	223, 646, 705, 717, 1057, 1061
LmnI	GCTCC	2 cut(s)	123, 143
Lsp1109I	GCAGC	2 cut(s)	305, 350
LweI	GCATC	3 cut(s)	160, 517, 1082
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	2 cut(s)	298, 995
MaeIII	GTNAC	3 cut(s)	299, 555, 1042
MalI	GATC	6 cut(s)	225, 648, 707, 719, 1059, 1063
MboI	GATC	6 cut(s)	223, 646, 705, 717, 1057, 1061
MboII	GAAGA	1 cut(s)	76
MluCI	AATT	5 cut(s)	276, 285, 894, 910, 941
MlyI	GAGTC	3 cut(s)	37, 425, 563
MroXI	GAANNNNTTC	1 cut(s)	861
MseI	TTAA	4 cut(s)	111, 702, 762, 804
MslI	CAYNNNNRTG	1 cut(s)	562
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	4 cut(s)	176, 203, 570, 714
MvaI	CCWGG	4 cut(s)	176, 203, 570, 714
MvnI	CGCG	2 cut(s)	129, 147
MwoI	GCNNNNNNNGC	5 cut(s)	124, 135, 144, 259, 536
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	6 cut(s)	223, 646, 705, 717, 1057, 1061
NlaIII	CATG	5 cut(s)	224, 247, 724, 755, 949
NmeAIII	GCCGAG	2 cut(s)	13, 374
NmuCI	GTSAC	3 cut(s)	299, 555, 1042
PagI	TCATGA	1 cut(s)	945
PasI	CCCWGGG	1 cut(s)	713
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	5 cut(s)	18, 548, 766, 979, 1003
PflMI	CCANNNNNTGG	1 cut(s)	530
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	295, 340
PleI	GAGTC	3 cut(s)	36, 425, 562
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
PpsI	GAGTC	3 cut(s)	36, 425, 562
Ppu21I	YACGTR	1 cut(s)	299
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	4 cut(s)	174, 201, 568, 712
PspCI	CACGTG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	4 cut(s)	174, 201, 568, 712
PspPI	GGNCC	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	671, 787
RsaNI	GTAC	2 cut(s)	670, 786
RseI	CAYNNNNRTG	1 cut(s)	562
SaqAI	TTAA	4 cut(s)	111, 702, 762, 804
SatI	GCNGC	2 cut(s)	294, 339
Sau3AI	GATC	6 cut(s)	223, 646, 705, 717, 1057, 1061
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	3 cut(s)	37, 425, 563
ScrFI	CCNGG	4 cut(s)	176, 203, 570, 714
SfaNI	GCATC	3 cut(s)	160, 517, 1082
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	562
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	5 cut(s)	276, 285, 894, 910, 941
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	4 cut(s)	174, 201, 568, 712
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	6 cut(s)	47, 152, 445, 790, 849, 1012
TaiI	ACGT	2 cut(s)	301, 998
TaqI	TCGA	3 cut(s)	843, 1006, 1060
TasI	AATT	5 cut(s)	276, 285, 894, 910, 941
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	5 cut(s)	18, 548, 766, 979, 1003
Tru1I	TTAA	4 cut(s)	111, 702, 762, 804
Tru9I	TTAA	4 cut(s)	111, 702, 762, 804
TscAI	CASTG	2 cut(s)	448, 564
TseFI	GTSAC	3 cut(s)	299, 555, 1042
TseI	GCWGC	2 cut(s)	293, 338
Tsp45I	GTSAC	3 cut(s)	299, 555, 1042
TspDTI	ATGAA	5 cut(s)	408, 806, 829, 934, 952
TspRI	CASTG	2 cut(s)	448, 564
Van91I	CCANNNNNTGG	1 cut(s)	530
Vha464I	CTTAAG	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	894
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.