AT2G41640

EGF domain-specific O-linked N-acetylglucosamine transferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002314
Physical Location & Seq
Forward (+)
17360374 .. 17363788
3415 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41640.2

Sequence Viewer

Length: 1503 bp
ATGGTGCAGTACCAGAGATTAATCATCCACCATGGAAGAAAAGAAGATAAGTTTAGAGTTTCTTCAGCAGAGGAAAGTGGTGGAGGTGGTTGTTGCTACTCCAAGAGAGCTAAACAAAAGTTTCGTTGTCTTCTCTTTCTCTCTATCCTCTCTTGCTGTTTCGTCTTGTCTCCTTATTACCTCTTCGGCTTCTCTACTCTCTCCCTCCTAGATTCGTTTCGCAGAGAAATCGAAGGTCTTAGCTCTTATGAGCCAGTTATTACCCCTCTGTGCTCAGAAATCTCCAATGGAACCATTTGTTGTGACAGAACCGGTTTGAGATCTGATATTTGTGTAATGAAAGGTGATGTTCGAACAAACTCTGCTTCTTCCTCAATCTTCCTCTTCACCTCCTCCACCAATAACAACACAAAACCGGAAAAGATCAAACCTTACACTAGAAAATGGGAGACTAGTGTGATGGACACCGTTCAAGAACTCAACCTCATCACCAAAGATTCCAACAAATCTTCAGATCGTGTATGCGATGTGTACCATGATGTTCCTGCTGTGTTCTTCTCCACTGGTGGATACACCGGTAACGTATACCACGAGTTTAACGACGGGATTATCCCTTTGTTTATAACTTCACAGCATTACAACAAAAAAGTTGTGTTTGTGATCGTCGAGTATCATGACTGGTGGGAGATGAAGTATGGAGATGTCGTTTCGCAGCTCTCGGATTATCCTCTGGTTGATTTCAATGGAGATACGAGAACACATTGTTTCAAAGAAGCAACCGTTGGATTACGTATTCACGACGAGTTAACTGTGAATTCTTCTTTGGTCATTGGGAATCAAACCATTGTTGACTTCAGAAACGTTTTGGATAGGGGTTACTCGCATCGTATCCAAAGCTTGACTCAGGAGGAAACAGAGGCGAACGTGACCGCACTCGATTTCAAGAAGAAGCCAAAACTGGTGATTCTTTCAAGAAACGGGTCATCAAGGGCGATATTAAACGAGAATCTTCTCGTGGAGCTAGCAGAGAAAACAGGGTTCAATGTGGAGGTTCTAAGACCACAAAAGACAACGGAAATGGCCAAGATTTATCGTTCGTTGAACACGAGCGATGTAATGATCGGTGTACATGGAGCAGCAATGACTCATTTCCTTTTCTTGAAACCGAAAACCGTTTTCATTCAGATCATCCCATTAGGGACGGACTGGGCGGCAGAGACATATTATGGAGAACCGGCGAAGAAGCTAGGATTGAAGTACGTTGGTTACAAGATTGCGCCGAAAGAGAGCTCTTTGTATGAAGAATATGGGAAAGATGACCCTGTAATCCGAGATCCGGATAGTCTAAACGACAAAGGATGGGAATATACGAAGAAAATCTATCTACAAGGACAGAACGTGAAGCTTGACTTGAGAAGATTCAGAGAAACGTTAACTCGTTCGTATGATTTCTCCATTAGAAGGAGATTTAGAGAAGATTACTTGTTACATAGAGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

500

Amino Acids

57.36

Weight (kDa)

8.14

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 312 - 394 3.4e-14 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AccI GTMKAC 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 1336
AciI CCGC 2 cut(s) 930, 1211
AclI AACGTT 2 cut(s) 861, 1430
AclWI GGATC 1 cut(s) 1328
AcoI YGGCCR 1 cut(s) 1080
AcsI RAATTY 1 cut(s) 814
AcuI CTGAAG 3 cut(s) 48, 495, 838
AfaI GTAC 4 cut(s) 11, 533, 1128, 1259
AfiI CCNNNNNNNGG 2 cut(s) 1336, 1461
AgeI ACCGGT 2 cut(s) 311, 575
AgsI TTSAA 9 cut(s) 473, 742, 769, 943, 972, 1042, 1102, 1162, 1255
AhlI ACTAGT 1 cut(s) 452
AjuI GAANNNNNNNTTGG 4 cut(s) 765, 797, 806, 838
AluBI AGCT 8 cut(s) 110, 243, 715, 897, 1021, 1246, 1290, 1405
AluI AGCT 8 cut(s) 110, 243, 715, 897, 1021, 1246, 1290, 1405
Alw21I GWGCWC 2 cut(s) 275, 1292
Alw26I GTCTC 3 cut(s) 174, 443, 1211
AlwI GGATC 1 cut(s) 1328
Aor13HI TCCGGA 1 cut(s) 1336
AoxI GGCC 1 cut(s) 1080
ApeKI GCWGC 2 cut(s) 712, 1136
ApoI RAATTY 1 cut(s) 814
AseI ATTAAT 1 cut(s) 20
AsiGI ACCGGT 2 cut(s) 311, 575
AspLEI GCGC 1 cut(s) 1279
AsuHPI GGTGA 4 cut(s) 356, 379, 481, 973
AsuII TTCGAA 1 cut(s) 352
AsuNHI GCTAGC 1 cut(s) 1021
BaeI ACNNNNGTAYC 2 cut(s) 562, 595
BalI TGGCCA 1 cut(s) 1082
BanII GRGCYC 1 cut(s) 1292
BauI CACGAG 3 cut(s) 590, 1013, 1105
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 275, 1292
BbvI GCAGC 2 cut(s) 724, 1148
BccI CCATC 2 cut(s) 454, 1353
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciVI GTATCC 2 cut(s) 563, 899
BcoDI GTCTC 3 cut(s) 174, 443, 1211
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 5 cut(s) 209, 438, 453, 1022, 1247
BfuI GTATCC 2 cut(s) 563, 899
BglII AGATCT 1 cut(s) 320
BisI GCNGC 3 cut(s) 713, 1137, 1212
BlsI GCNGC 3 cut(s) 714, 1138, 1213
BmiI GGNNCC 1 cut(s) 292
BmrI ACTGGG 1 cut(s) 1216
BmsI GCATC 1 cut(s) 892
BmtI GCTAGC 1 cut(s) 1025
BmuI ACTGGG 1 cut(s) 1216
BpiI GAAGAC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 1432
BsaAI YACGTR 1 cut(s) 791
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 4 cut(s) 311, 415, 575, 1336
BsaXI ACNNNNNCTCC 4 cut(s) 677, 690, 707, 720
Bsc4I CCNNNNNNNGG 2 cut(s) 1336, 1461
Bse118I RCCGGY 3 cut(s) 311, 575, 1234
Bse1I ACTGG 5 cut(s) 254, 568, 683, 963, 1211
Bse3DI GCAATG 1 cut(s) 1146
BseAI TCCGGA 1 cut(s) 1336
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 3 cut(s) 24, 1188, 1364
BseLI CCNNNNNNNGG 2 cut(s) 1336, 1461
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 2 cut(s) 288, 917
BseNI ACTGG 5 cut(s) 254, 568, 683, 963, 1211
BseRI GAGGAG 1 cut(s) 382
BseXI GCAGC 2 cut(s) 724, 1148
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 1 cut(s) 1082
BshTI ACCGGT 2 cut(s) 311, 575
BsiHKAI GWGCWC 2 cut(s) 275, 1292
BsiSI CCGG 5 cut(s) 312, 416, 576, 1235, 1337
BslFI GGGAC 1 cut(s) 1213
BslI CCNNNNNNNGG 2 cut(s) 1336, 1461
BsmAI GTCTC 3 cut(s) 174, 443, 1211
BsmFI GGGAC 1 cut(s) 1213
BsnI GGCC 1 cut(s) 1082
Bsp119I TTCGAA 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 275, 1292
Bsp13I TCCGGA 1 cut(s) 1336
Bsp1407I TGTACA 1 cut(s) 1126
Bsp143I GATC 7 cut(s) 320, 423, 514, 660, 1119, 1185, 1333
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 2 cut(s) 930, 1211
BspANI GGCC 1 cut(s) 1082
BspCNI CTCAG 2 cut(s) 287, 916
BspEI TCCGGA 1 cut(s) 1336
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 1025
BspPI GGATC 1 cut(s) 1328
BspT104I TTCGAA 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 1146
BsrFI RCCGGY 3 cut(s) 311, 575, 1234
BsrGI TGTACA 1 cut(s) 1126
BsrI ACTGG 5 cut(s) 254, 568, 683, 963, 1211
BssAI RCCGGY 3 cut(s) 311, 575, 1234
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 7 cut(s) 320, 423, 514, 660, 1119, 1185, 1333
BssNAI GTATAC 1 cut(s) 586
BssSI CACGAG 3 cut(s) 590, 1013, 1105
BssT1I CCWWGG 1 cut(s) 31
Bst1107I GTATAC 1 cut(s) 586
Bst2BI CACGAG 3 cut(s) 590, 1013, 1105
Bst4CI ACNGT 4 cut(s) 469, 781, 811, 1174
Bst6I CTCTTC 2 cut(s) 188, 389
BstAUI TGTACA 1 cut(s) 1126
BstBAI YACGTR 1 cut(s) 791
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 1023
BstDEI CTNAG 4 cut(s) 239, 274, 903, 1055
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 3 cut(s) 24, 1188, 1364
BstHHI GCGC 1 cut(s) 1279
BstKTI GATC 7 cut(s) 323, 426, 517, 663, 1122, 1188, 1336
BstMAI GTCTC 3 cut(s) 174, 443, 1211
BstMBI GATC 7 cut(s) 320, 423, 514, 660, 1119, 1185, 1333
BstSNI TACGTA 1 cut(s) 791
BstV1I GCAGC 2 cut(s) 724, 1148
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 320, 1333
BstYI RGATCY 2 cut(s) 320, 1333
BstZ17I GTATAC 1 cut(s) 586
BsuI GTATCC 2 cut(s) 563, 899
BsuRI GGCC 1 cut(s) 1082
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 2 cut(s) 540, 1125
BtsCI GGATG 3 cut(s) 24, 1188, 1364
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 1 cut(s) 1023
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 1279
Cfr10I RCCGGY 3 cut(s) 311, 575, 1234
Csp6I GTAC 4 cut(s) 10, 532, 1127, 1258
CspAI ACCGGT 2 cut(s) 311, 575
CviAII CATG 4 cut(s) 32, 536, 674, 1130
CviQI GTAC 4 cut(s) 10, 532, 1127, 1258
DdeI CTNAG 4 cut(s) 239, 274, 903, 1055
DpnI GATC 7 cut(s) 322, 425, 516, 662, 1121, 1187, 1335
DpnII GATC 7 cut(s) 320, 423, 514, 660, 1119, 1185, 1333
EaeI YGGCCR 1 cut(s) 1080
Eam1104I CTCTTC 2 cut(s) 188, 389
EarI CTCTTC 2 cut(s) 188, 389
Ecl136II GAGCTC 1 cut(s) 1290
Eco105I TACGTA 1 cut(s) 791
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 1292
Eco53kI GAGCTC 1 cut(s) 1290
Eco57I CTGAAG 3 cut(s) 48, 495, 838
EcoICRI GAGCTC 1 cut(s) 1290
EcoRI GAATTC 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 1292
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 4 cut(s) 35, 539, 677, 1133
FalI AAGNNNNNCTT 2 cut(s) 1394, 1426
FaqI GGGAC 1 cut(s) 1213
FatI CATG 4 cut(s) 31, 535, 673, 1129
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 3 cut(s) 713, 1137, 1212
FokI GGATG 3 cut(s) 11, 1175, 1371
FriOI GRGCYC 1 cut(s) 1292
Fsp4HI GCNGC 3 cut(s) 713, 1137, 1212
FspBI CTAG 5 cut(s) 209, 438, 453, 1022, 1247
GlaI GCGC 1 cut(s) 1278
GluI GCNGC 3 cut(s) 713, 1137, 1212
HaeIII GGCC 1 cut(s) 1082
HapII CCGG 5 cut(s) 312, 416, 576, 1235, 1337
HhaI GCGC 1 cut(s) 1279
Hin1II CATG 4 cut(s) 35, 539, 677, 1133
Hin6I GCGC 1 cut(s) 1277
HinP1I GCGC 1 cut(s) 1277
HincII GTYRAC 3 cut(s) 807, 850, 1434
HindII GTYRAC 3 cut(s) 807, 850, 1434
HindIII AAGCTT 2 cut(s) 895, 1403
HinfI GANTC 8 cut(s) 212, 497, 835, 901, 964, 1006, 1144, 1419
HpaI GTTAAC 2 cut(s) 807, 1434
HpaII CCGG 5 cut(s) 312, 416, 576, 1235, 1337
HphI GGTGA 4 cut(s) 356, 379, 481, 973
Hpy166II GTNNAC 6 cut(s) 532, 586, 807, 850, 1127, 1434
Hpy188I TCNGA 8 cut(s) 277, 325, 514, 721, 857, 1185, 1331, 1424
Hpy188III TCNNGA 8 cut(s) 473, 674, 797, 905, 943, 972, 1159, 1337
Hpy8I GTNNAC 6 cut(s) 532, 586, 807, 850, 1127, 1434
Hpy99I CGWCG 3 cut(s) 605, 668, 803
HpyAV CCTTC 2 cut(s) 227, 1455
HpyCH4III ACNGT 4 cut(s) 469, 781, 811, 1174
HpyCH4IV ACGT 7 cut(s) 582, 790, 861, 924, 1260, 1398, 1430
HpyCH4V TGCA 1 cut(s) 7
HpyF3I CTNAG 4 cut(s) 239, 274, 903, 1055
HpySE526I ACGT 7 cut(s) 582, 790, 861, 924, 1260, 1398, 1430
Hsp92II CATG 4 cut(s) 35, 539, 677, 1133
HspAI GCGC 1 cut(s) 1277
Kpn2I TCCGGA 1 cut(s) 1336
KspAI GTTAAC 2 cut(s) 807, 1434
Kzo9I GATC 7 cut(s) 320, 423, 514, 660, 1119, 1185, 1333
LmnI GCTCC 2 cut(s) 1018, 1133
Lsp1109I GCAGC 2 cut(s) 724, 1148
LweI GCATC 1 cut(s) 892
MaeI CTAG 5 cut(s) 209, 438, 453, 1022, 1247
MaeII ACGT 7 cut(s) 582, 790, 861, 924, 1260, 1398, 1430
MaeIII GTNAC 6 cut(s) 302, 578, 875, 925, 1265, 1485
MalI GATC 7 cut(s) 322, 425, 516, 662, 1121, 1187, 1335
MboI GATC 7 cut(s) 320, 423, 514, 660, 1119, 1185, 1333
MflI RGATCY 2 cut(s) 320, 1333
MhlI GDGCHC 2 cut(s) 275, 1292
MlsI TGGCCA 1 cut(s) 1082
MluCI AATT 1 cut(s) 814
MluNI TGGCCA 1 cut(s) 1082
MlyI GAGTC 2 cut(s) 895, 1138
MmeI TCCRAC 2 cut(s) 525, 763
Mox20I TGGCCA 1 cut(s) 1082
MroI TCCGGA 1 cut(s) 1336
MscI TGGCCA 1 cut(s) 1082
MseI TTAA 6 cut(s) 20, 597, 806, 998, 1433, 1501
Msp20I TGGCCA 1 cut(s) 1082
MspI CCGG 5 cut(s) 312, 416, 576, 1235, 1337
NcoI CCATGG 1 cut(s) 31
NdeII GATC 7 cut(s) 320, 423, 514, 660, 1119, 1185, 1333
NheI GCTAGC 1 cut(s) 1021
NlaIII CATG 4 cut(s) 35, 539, 677, 1133
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 302, 925
NspV TTCGAA 1 cut(s) 352
PagI TCATGA 1 cut(s) 673
PcsI WCGNNNNNNNCGW 3 cut(s) 588, 597, 1103
PfeI GAWTC 6 cut(s) 212, 497, 835, 964, 1006, 1419
PinAI ACCGGT 2 cut(s) 311, 575
PkrI GCNGC 3 cut(s) 714, 1138, 1213
PleI GAGTC 2 cut(s) 895, 1138
PpsI GAGTC 2 cut(s) 895, 1138
Ppu21I YACGTR 1 cut(s) 791
PshBI ATTAAT 1 cut(s) 20
PsiI TTATAA 1 cut(s) 623
Psp124BI GAGCTC 1 cut(s) 1292
Psp1406I AACGTT 2 cut(s) 861, 1430
PspN4I GGNNCC 1 cut(s) 292
PsuI RGATCY 2 cut(s) 320, 1333
RsaI GTAC 4 cut(s) 11, 533, 1128, 1259
RsaNI GTAC 4 cut(s) 10, 532, 1127, 1258
SacI GAGCTC 1 cut(s) 1292
SaqAI TTAA 6 cut(s) 20, 597, 806, 998, 1433, 1501
SatI GCNGC 3 cut(s) 713, 1137, 1212
Sau3AI GATC 7 cut(s) 320, 423, 514, 660, 1119, 1185, 1333
SchI GAGTC 2 cut(s) 895, 1138
SduI GDGCHC 2 cut(s) 275, 1292
SfaNI GCATC 1 cut(s) 892
SfuI TTCGAA 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 1411
SmoI CTYRAG 1 cut(s) 1411
SnaBI TACGTA 1 cut(s) 791
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 1 cut(s) 814
SsiI CCGC 2 cut(s) 930, 1211
SspMI CTAG 5 cut(s) 209, 438, 453, 1022, 1247
SstI GAGCTC 1 cut(s) 1292
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 4 cut(s) 469, 781, 811, 1174
TaiI ACGT 7 cut(s) 585, 793, 864, 927, 1263, 1401, 1433
TaqI TCGA 4 cut(s) 231, 352, 666, 936
TasI AATT 1 cut(s) 814
TatI WGTACW 1 cut(s) 1126
TauI GCSGC 1 cut(s) 1214
TfiI GAWTC 6 cut(s) 212, 497, 835, 964, 1006, 1419
Tru1I TTAA 6 cut(s) 20, 597, 806, 998, 1433, 1501
Tru9I TTAA 6 cut(s) 20, 597, 806, 998, 1433, 1501
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 2 cut(s) 302, 925
TseI GCWGC 2 cut(s) 712, 1136
Tsp45I GTSAC 2 cut(s) 302, 925
TspDTI ATGAA 4 cut(s) 353, 704, 1168, 1314
TspGWI ACGGA 2 cut(s) 1088, 1217
TspRI CASTG 1 cut(s) 568
VspI ATTAAT 1 cut(s) 20
XapI RAATTY 1 cut(s) 814
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 5 cut(s) 209, 438, 453, 1022, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.