Rw3G022910

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002314
Physical Location & Seq
Reverse (-)
28407451 .. 28411361
3911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G022910.1

Sequence Viewer

Length: 1608 bp
ATGGTATACCACCAGCGCAGGAAAGGCGAAAAGCCTACCGAGGATGAAGATGAGGAGGGTCAGAGTCTTGCAATGGAGTGTGCGAGCTCTGGTTACTACAAAAGATCAAGGCCCAAGCTTCTCACCTTTCTCTTCATCTCTCTTCTCTCTTGTGGCTTCATATTAGTCCCTCATCTGATATTTTCCTCTGTCACCACTTTCTCTCTTTCACAATCACCGGCAGTAGAAAACGAAGGCCCTAGTACTGCTGCTGCTGTTATAGATGCAAAGGCTCCCTTCTATTCTTCAGTCACTAATGGAGCTATATGTTGTGATAGAAGCAGTATCCGTTCAGATGTTTGTACCATGAAAGGGGATGTAAGAACACACTCGCCTTCCTCTTCTATCTTCGTCTACGAATCGCAAGACGAAGCAGTGAAGAATGAGGAGGATCTCCAACACGAAAAGATCAGACCATACACCAGAAAATGGGAAACAAATATTATGGACACCATTGATGAGTTGGATCTCATTGCAAAGAAAAACACTCTGATCATGAACCATCATAAATGTGATGTCCAACATGATGTTCCAGCGGTGTTTTTCTCAACCGGGGGCTACACCGGCAACGTCTACCATGAATTTAATGATGGGATAATGCCACTGTACATTACTTCCCAACATTTCAACAAGAAGGTTGTGTTCGTCATTCTTGAATTTCACAATTGGTGGGTCATGAAATATTCAGACATTCTTTCCCATCTCTCAGATTATCCCTTAATGGATTTCCGTACTGATAAGAGAGTTCATTGCTTCCCTGAAGCCATTGTCGGTTTGAAAATTCACGATGAGCTGTCTGTGGATTCTTCATTGATGGAAAGGAATGCGAGCATAGTCGAGTTTCGAAATCTCCTAGACAGAGCTTACCGGCCTCAGATCAGAAGTCTAATGTATGAACATGCAAAGCTTTCTGTTGTTCCCAAGTTGAAAAAATTACCATCAAGAATCAGGAGAAAAGTGCAAGAGCATCCATTCAATAAGCCGAAGTTGGTTATTATATCTCGAAATGGATCAAGGGCAATAACAAATGAGAATTTTCTGGTGAAAATGGCTGAGAAAGTCGGGTTTCAAGTCCAAGTTTTGAGGCCAGATAGCCGGACAATGTTAGCAGAGATTTATTGGGCTCTAAATTCGAGTGAAGTCATGATTGGGGTTCATGGTGCTGCCATGACACATTTTCTGTTCATGAAGCCTGGTTCTGTGTTCATTCAAGTCATTCCTCTCGGAACTGAATGGGCAGCAGAGGCATATTATGGAGAACCTGCAAAGAAGCTTGGGTTGAAGTACATTGGATACCAAATCCTTACGAAAGAGAGCTCATTATATGACAAGTATGATAAGGATGATCCTGTTCTTAAAGATCCAAGGAGTGTAACCAGAAAGGGATGGCAATACACAAAGATGATCTATCTTGAGGATCAGACAGTGAGACTACACCTCCCAAGATTTCGGAAGCAATTGGGCTGGAATCCTGTTTGTTCCTTGTTGGGTCTAATGGTTATTGGGCCTAGGCTTGGGCTTTGGCTCCAAATTTATTTTTCTTTATATTTTATTGTTATTTATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

535

Amino Acids

61.55

Weight (kDa)

8.64

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 317 - 416 2.6e-15 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1309
AccB7I CCANNNNNTGG 1 cut(s) 468
AccI GTMKAC 3 cut(s) 6, 393, 612
AciI CCGC 1 cut(s) 575
AclWI GGATC 6 cut(s) 438, 513, 1057, 1379, 1394, 1464
AcsI RAATTY 6 cut(s) 620, 695, 819, 1072, 1168, 1569
AcuI CTGAAG 2 cut(s) 270, 819
AfaI GTAC 5 cut(s) 244, 343, 647, 772, 1325
AfiI CCNNNNNNNGG 3 cut(s) 351, 468, 1553
AgsI TTSAA 8 cut(s) 667, 695, 817, 967, 1015, 1109, 1250, 1321
AjnI CCWGG 1 cut(s) 1231
AjuI GAANNNNNNNTTGG 4 cut(s) 552, 584, 1170, 1202
AluBI AGCT 8 cut(s) 87, 118, 302, 832, 902, 946, 1312, 1356
AluI AGCT 8 cut(s) 87, 118, 302, 832, 902, 946, 1312, 1356
Alw21I GWGCWC 2 cut(s) 89, 1358
Alw26I GTCTC 1 cut(s) 1462
AlwI GGATC 6 cut(s) 438, 513, 1057, 1379, 1394, 1464
AoxI GGCC 5 cut(s) 110, 235, 908, 1124, 1544
ApeKI GCWGC 4 cut(s) 248, 251, 1202, 1277
ApoI RAATTY 6 cut(s) 620, 695, 819, 1072, 1168, 1569
AspA2I CCTAGG 1 cut(s) 1547
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 3 cut(s) 111, 236, 1544
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 4 cut(s) 115, 184, 207, 1093
AsuII TTCGAA 1 cut(s) 883
AvrII CCTAGG 1 cut(s) 1547
BanII GRGCYC 3 cut(s) 89, 1165, 1358
Bbv12I GWGCWC 2 cut(s) 89, 1358
BbvI GCAGC 4 cut(s) 235, 238, 1189, 1289
BccI CCATC 6 cut(s) 549, 623, 747, 847, 985, 1419
BciT130I CCWGG 1 cut(s) 1233
BciVI GTATCC 2 cut(s) 335, 1325
BclI TGATCA 1 cut(s) 531
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 1462
BfaI CTAG 3 cut(s) 240, 893, 1548
BfuAI ACCTGC 1 cut(s) 1309
BfuI GTATCC 2 cut(s) 335, 1325
BisI GCNGC 4 cut(s) 249, 252, 1203, 1278
BlnI CCTAGG 1 cut(s) 1547
BlsI GCNGC 4 cut(s) 250, 253, 1204, 1279
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 592, 1233
BmgT120I GGNCC 3 cut(s) 111, 236, 1544
BmiI GGNNCC 2 cut(s) 273, 1565
BmrFI CCNGG 2 cut(s) 592, 1233
BmsI GCATC 2 cut(s) 253, 1015
Bpu14I TTCGAA 1 cut(s) 883
BpuEI CTTGAG 1 cut(s) 1472
BpuMI CCSGG 1 cut(s) 592
BsaJI CCNNGG 4 cut(s) 39, 591, 1403, 1547
BsaXI ACNNNNNCTCC 2 cut(s) 1461, 1491
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 468, 1553
Bse118I RCCGGY 3 cut(s) 217, 602, 906
Bse3DI GCAATG 3 cut(s) 78, 510, 787
BseBI CCWGG 1 cut(s) 1233
BseDI CCNNGG 4 cut(s) 39, 591, 1403, 1547
BseGI GGATG 5 cut(s) 49, 361, 1006, 1387, 1430
BseLI CCNNNNNNNGG 3 cut(s) 351, 468, 1553
BseMI GCAATG 3 cut(s) 78, 510, 787
BseMII CTCAG 3 cut(s) 759, 926, 1083
BseRI GAGGAG 2 cut(s) 68, 440
BseXI GCAGC 4 cut(s) 235, 238, 1189, 1289
BshFI GGCC 5 cut(s) 112, 237, 910, 1126, 1546
BsiHKAI GWGCWC 2 cut(s) 89, 1358
BsiSI CCGG 5 cut(s) 218, 591, 603, 907, 1135
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 351, 468, 1553
BsmAI GTCTC 1 cut(s) 1462
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 5 cut(s) 112, 237, 910, 1126, 1546
Bsp119I TTCGAA 1 cut(s) 883
Bsp1286I GDGCHC 3 cut(s) 89, 1165, 1358
Bsp1407I TGTACA 1 cut(s) 645
BspACI CCGC 1 cut(s) 575
BspANI GGCC 5 cut(s) 112, 237, 910, 1126, 1546
BspCNI CTCAG 3 cut(s) 758, 925, 1084
BspHI TCATGA 4 cut(s) 534, 714, 1182, 1224
BspLI GGNNCC 2 cut(s) 273, 1565
BspMI ACCTGC 1 cut(s) 1309
BspPI GGATC 6 cut(s) 438, 513, 1057, 1379, 1394, 1464
BspT104I TTCGAA 1 cut(s) 883
BsrDI GCAATG 3 cut(s) 78, 510, 787
BsrFI RCCGGY 3 cut(s) 217, 602, 906
BsrGI TGTACA 1 cut(s) 645
BssAI RCCGGY 3 cut(s) 217, 602, 906
BssECI CCNNGG 4 cut(s) 39, 591, 1403, 1547
BssNAI GTATAC 1 cut(s) 7
BssT1I CCWWGG 2 cut(s) 1403, 1547
Bst1107I GTATAC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 1233
Bst4CI ACNGT 2 cut(s) 645, 1465
Bst6I CTCTTC 3 cut(s) 137, 147, 385
BstAUI TGTACA 1 cut(s) 645
BstBI TTCGAA 1 cut(s) 883
BstC8I GCNNGC 2 cut(s) 85, 868
BstDEI CTNAG 3 cut(s) 745, 912, 1092
BstF5I GGATG 5 cut(s) 49, 361, 1006, 1387, 1430
BstHHI GCGC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 1462
BstMWI GCNNNNNNNGC 3 cut(s) 24, 603, 1283
BstNI CCWGG 1 cut(s) 1233
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 2 cut(s) 590, 1231
BstV1I GCAGC 4 cut(s) 235, 238, 1189, 1289
BstX2I RGATCY 3 cut(s) 430, 505, 1399
BstYI RGATCY 3 cut(s) 430, 505, 1399
BstZ17I GTATAC 1 cut(s) 7
BsuI GTATCC 2 cut(s) 335, 1325
BsuRI GGCC 5 cut(s) 112, 237, 910, 1126, 1546
BtsCI GGATG 5 cut(s) 49, 361, 1006, 1387, 1430
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 420, 641, 1470
BveI ACCTGC 1 cut(s) 1309
Cac8I GCNNGC 2 cut(s) 85, 868
CciI TCATGA 4 cut(s) 534, 714, 1182, 1224
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 3 cut(s) 217, 602, 906
Cfr13I GGNCC 3 cut(s) 111, 236, 1544
Csp6I GTAC 5 cut(s) 243, 342, 646, 771, 1324
CviQI GTAC 5 cut(s) 243, 342, 646, 771, 1324
DdeI CTNAG 3 cut(s) 745, 912, 1092
Eam1104I CTCTTC 3 cut(s) 137, 147, 385
EarI CTCTTC 3 cut(s) 137, 147, 385
Ecl136II GAGCTC 2 cut(s) 87, 1356
Eco130I CCWWGG 2 cut(s) 1403, 1547
Eco24I GRGCYC 3 cut(s) 89, 1165, 1358
Eco53kI GAGCTC 2 cut(s) 87, 1356
Eco57I CTGAAG 2 cut(s) 270, 819
EcoICRI GAGCTC 2 cut(s) 87, 1356
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 1231
EcoT14I CCWWGG 2 cut(s) 1403, 1547
EcoT38I GRGCYC 3 cut(s) 89, 1165, 1358
ErhI CCWWGG 2 cut(s) 1403, 1547
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 531
FblI GTMKAC 3 cut(s) 6, 393, 612
Fnu4HI GCNGC 4 cut(s) 249, 252, 1203, 1278
FokI GGATG 5 cut(s) 56, 368, 993, 1394, 1437
FriOI GRGCYC 3 cut(s) 89, 1165, 1358
Fsp4HI GCNGC 4 cut(s) 249, 252, 1203, 1278
FspBI CTAG 3 cut(s) 240, 893, 1548
GlaI GCGC 1 cut(s) 17
GluI GCNGC 4 cut(s) 249, 252, 1203, 1278
HaeIII GGCC 5 cut(s) 112, 237, 910, 1126, 1546
HapII CCGG 5 cut(s) 218, 591, 603, 907, 1135
HhaI GCGC 1 cut(s) 18
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HindIII AAGCTT 3 cut(s) 116, 944, 1310
HinfI GANTC 5 cut(s) 64, 398, 842, 984, 1507
HpaII CCGG 5 cut(s) 218, 591, 603, 907, 1135
HphI GGTGA 4 cut(s) 115, 184, 207, 1093
Hpy166II GTNNAC 3 cut(s) 7, 394, 613
Hpy8I GTNNAC 3 cut(s) 7, 394, 613
HpyAV CCTTC 4 cut(s) 227, 286, 384, 667
HpyCH4III ACNGT 2 cut(s) 645, 1465
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 6 cut(s) 71, 266, 515, 941, 1000, 1304
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 603, 1283
HpyF3I CTNAG 3 cut(s) 745, 912, 1092
HpySE526I ACGT 1 cut(s) 609
HspAI GCGC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 531
LmnI GCTCC 3 cut(s) 277, 299, 1569
Lsp1109I GCAGC 4 cut(s) 235, 238, 1189, 1289
LweI GCATC 2 cut(s) 253, 1015
MaeI CTAG 3 cut(s) 240, 893, 1548
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 4 cut(s) 92, 190, 289, 1411
MboII GAAGA 8 cut(s) 59, 124, 134, 276, 372, 379, 430, 837
MfeI CAATTG 2 cut(s) 703, 1496
MflI RGATCY 3 cut(s) 430, 505, 1399
MhlI GDGCHC 3 cut(s) 89, 1165, 1358
MluCI AATT 9 cut(s) 620, 695, 703, 819, 971, 1072, 1168, 1496, 1569
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 3 cut(s) 460, 483, 583
MseI TTAA 3 cut(s) 624, 758, 1395
MslI CAYNNNNRTG 2 cut(s) 549, 1439
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 5 cut(s) 218, 591, 603, 907, 1135
MspR9I CCNGG 2 cut(s) 592, 1233
MunI CAATTG 2 cut(s) 703, 1496
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 1 cut(s) 1233
MwoI GCNNNNNNNGC 3 cut(s) 24, 603, 1283
NciI CCSGG 1 cut(s) 592
NlaIV GGNNCC 2 cut(s) 273, 1565
NmuCI GTSAC 2 cut(s) 190, 289
NspI RCATGY 1 cut(s) 941
NspV TTCGAA 1 cut(s) 883
PagI TCATGA 4 cut(s) 534, 714, 1182, 1224
PctI GAATGC 1 cut(s) 868
PfeI GAWTC 4 cut(s) 398, 842, 984, 1507
PflMI CCANNNNNTGG 1 cut(s) 468
PkrI GCNGC 4 cut(s) 250, 253, 1204, 1279
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
Psp124BI GAGCTC 2 cut(s) 89, 1358
Psp6I CCWGG 1 cut(s) 1231
PspGI CCWGG 1 cut(s) 1231
PspN4I GGNNCC 2 cut(s) 273, 1565
PspPI GGNCC 3 cut(s) 111, 236, 1544
PsuI RGATCY 3 cut(s) 430, 505, 1399
RsaI GTAC 5 cut(s) 244, 343, 647, 772, 1325
RsaNI GTAC 5 cut(s) 243, 342, 646, 771, 1324
RseI CAYNNNNRTG 2 cut(s) 549, 1439
SacI GAGCTC 2 cut(s) 89, 1358
SaqAI TTAA 3 cut(s) 624, 758, 1395
SatI GCNGC 4 cut(s) 249, 252, 1203, 1278
Sau96I GGNCC 3 cut(s) 111, 236, 1544
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 592, 1233
SduI GDGCHC 3 cut(s) 89, 1165, 1358
SfaNI GCATC 2 cut(s) 253, 1015
SfuI TTCGAA 1 cut(s) 883
SmiMI CAYNNNNRTG 2 cut(s) 549, 1439
SmlI CTYRAG 1 cut(s) 1451
SmoI CTYRAG 1 cut(s) 1451
Sse9I AATT 9 cut(s) 620, 695, 703, 819, 971, 1072, 1168, 1496, 1569
SsiI CCGC 1 cut(s) 575
SspI AATATT 2 cut(s) 481, 722
SspMI CTAG 3 cut(s) 240, 893, 1548
SstI GAGCTC 2 cut(s) 89, 1358
StyD4I CCNGG 2 cut(s) 590, 1231
StyI CCWWGG 2 cut(s) 1403, 1547
TaaI ACNGT 2 cut(s) 645, 1465
TaiI ACGT 1 cut(s) 612
TaqI TCGA 4 cut(s) 876, 883, 1042, 1172
TasI AATT 9 cut(s) 620, 695, 703, 819, 971, 1072, 1168, 1496, 1569
TatI WGTACW 3 cut(s) 242, 645, 1323
TfiI GAWTC 4 cut(s) 398, 842, 984, 1507
Tru1I TTAA 3 cut(s) 624, 758, 1395
Tru9I TTAA 3 cut(s) 624, 758, 1395
TscAI CASTG 3 cut(s) 420, 648, 1470
TseFI GTSAC 2 cut(s) 190, 289
TseI GCWGC 4 cut(s) 248, 251, 1202, 1277
Tsp45I GTSAC 2 cut(s) 190, 289
TspGWI ACGGA 2 cut(s) 317, 758
TspRI CASTG 3 cut(s) 420, 648, 1470
Van91I CCANNNNNTGG 1 cut(s) 468
XapI RAATTY 6 cut(s) 620, 695, 819, 1072, 1168, 1569
XceI RCATGY 1 cut(s) 941
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XmaJI CCTAGG 1 cut(s) 1547
XmiI GTMKAC 3 cut(s) 6, 393, 612
XspI CTAG 3 cut(s) 240, 893, 1548
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.