Rh3CG287200

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002314
Physical Location & Seq
Reverse (-)
29061260 .. 29064187
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG287200.1

Sequence Viewer

Length: 1566 bp
ATGGTATACCACCAGCGCAGGAAAGGCGAAAAGCCTACCGAGGATGAAGATGAGGAGGGTCAGAGTCTTGCAATGGAGTGTGCGAGCTCTGGTTACTACAAAAGATCAAGGCCCAAGCTTCTCACCTTTCTCTTCATCTCTCTTCTCTCTTGTGGCTTCATATTAGTCCCTCATCTGATATTTTCCTCTGTCACCACTTTCTCTCTTTCACAATCACCGGCAGTAGAAAACGAAGGCCCTAGTACTGCTGCTGCTGTTATAGATGCAAAGGCTCCCTTCTATTCTTCAGTCACTAATGGAGCTATATGTTGTGATAGAAGCAGTATCCGTTCAGATGTTTGTACCATGAAAGGGGATGTAAGAACACACTCGCCTTCCTCTTCTATCTTCGTCTACGAATCGCAAGACGAAGCAGTGAAGAATGAGGAGGATCTCCAACACGAAAAGATCAGACCATACACCAGAAAATGGGAAACAAATATTATGGACACCATTGATGAGTTGGATCTCATTGCAAAGAAAAACACTCTGATCATGAACCATCATAAATGTGATGTCCAACATGATGTTCCAGCGGTGTTTTTCTCAACCGGGGGCTACACCGGCAACGTCTACCATGAATTTAATGATGGGATAATGCCACTGTACATTACTTCCCAACATTTCAACAAGAAGGTTGTGTTCGTCATTCTTGAATTTCACAATTGGTGGGTCATGAAATATTCAGACATTCTTTCCCATCTCTCAGATTATCCCTTAATGGATTTCCGTACTGATAAGAGAGTTCATTGCTTCCCTGAAGCCATTGTCGGTTTGAAAATTCACGATGAGCTGTCTGTGGATTCTTCATTGATGGAAAGGAATGCGAGCATAGTCGAGTTTCGAAATCTCCTAGACAGAGCTTACCGGCCTCAGATCAGAAGTCTAATGTATGAACATGCAAAGCTTTCTGTTGTTCCCAAGTTGAAAAAATTACCATCAAGAATCAGGAGAAAAGTGCAAGAGCATCCATTCAATAAGCCGAAGTTGGTTATTATATCTCGAAATGGATCAAGGGCAATAACAAATGAGAATTTTCTGGTGAAAATGGCTGAGAAAGTCGGGTTTCAAGTCCAAGTTTTGAGGCCAGATAGCCGGACAATGTTAGCAGAGATTTATTGGGCTCTAAATTCGAGTGAAGTCATGATTGGGGTTCATGGTGCTGCCATGACACATTTTCTGTTCATGAAGCCTGGTTCTGTGTTCATTCAAGTCATTCCTCTCGGAACTGAATGGGCAGCAGAGGCATATTATGGAGAACCTGCAAAGAAGCTTGGGTTGAAGTACATTGGATACCAAATCCTTACGAAAGAGAGCTCATTATATGACAAGTATGATAAGGATGATCCTGTTCTTAAAGATCCAAGGAGTGTAACCAGAAAGGGATGGCAATACACAAAGATGATCTATCTTGAGGATCAGACAGTGAGACTACACCTCCCAAGATTTCGGAAGCAGTTGGTTGGCGCTTTTGATTACACCATTGATAGATTGAATCAGCAGGGTCCTAATATTCAGTCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

521

Amino Acids

59.86

Weight (kDa)

8.44

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 317 - 416 2.5e-15 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1309
AccB7I CCANNNNNTGG 1 cut(s) 468
AccI GTMKAC 3 cut(s) 6, 393, 612
AciI CCGC 1 cut(s) 575
AclWI GGATC 6 cut(s) 438, 513, 1057, 1379, 1394, 1464
AcsI RAATTY 5 cut(s) 620, 695, 819, 1072, 1168
AcuI CTGAAG 2 cut(s) 270, 819
AfaI GTAC 5 cut(s) 244, 343, 647, 772, 1325
AfiI CCNNNNNNNGG 2 cut(s) 351, 468
AgsI TTSAA 9 cut(s) 667, 695, 817, 967, 1015, 1109, 1250, 1321, 1534
AjnI CCWGG 1 cut(s) 1231
AjuI GAANNNNNNNTTGG 4 cut(s) 552, 584, 1170, 1202
AluBI AGCT 8 cut(s) 87, 118, 302, 832, 902, 946, 1312, 1356
AluI AGCT 8 cut(s) 87, 118, 302, 832, 902, 946, 1312, 1356
Alw21I GWGCWC 2 cut(s) 89, 1358
Alw26I GTCTC 1 cut(s) 1462
AlwI GGATC 6 cut(s) 438, 513, 1057, 1379, 1394, 1464
AoxI GGCC 4 cut(s) 110, 235, 908, 1124
ApeKI GCWGC 4 cut(s) 248, 251, 1202, 1277
ApoI RAATTY 5 cut(s) 620, 695, 819, 1072, 1168
AspLEI GCGC 2 cut(s) 18, 1508
AspS9I GGNCC 3 cut(s) 111, 236, 1544
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 4 cut(s) 115, 184, 207, 1093
AsuII TTCGAA 1 cut(s) 883
AvaII GGWCC 1 cut(s) 1544
BanII GRGCYC 3 cut(s) 89, 1165, 1358
Bbv12I GWGCWC 2 cut(s) 89, 1358
BbvI GCAGC 4 cut(s) 235, 238, 1189, 1289
BccI CCATC 6 cut(s) 549, 623, 747, 847, 985, 1419
BciT130I CCWGG 1 cut(s) 1233
BciVI GTATCC 2 cut(s) 335, 1325
BclI TGATCA 1 cut(s) 531
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 1462
BfaI CTAG 2 cut(s) 240, 893
BfoI RGCGCY 1 cut(s) 1509
BfuAI ACCTGC 1 cut(s) 1309
BfuI GTATCC 2 cut(s) 335, 1325
BisI GCNGC 4 cut(s) 249, 252, 1203, 1278
BlsI GCNGC 4 cut(s) 250, 253, 1204, 1279
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 592, 1233
Bme18I GGWCC 1 cut(s) 1544
BmgT120I GGNCC 3 cut(s) 111, 236, 1544
BmiI GGNNCC 2 cut(s) 273, 1545
BmrFI CCNGG 2 cut(s) 592, 1233
BmsI GCATC 2 cut(s) 253, 1015
Bpu14I TTCGAA 1 cut(s) 883
BpuEI CTTGAG 1 cut(s) 1472
BpuMI CCSGG 1 cut(s) 592
BsaJI CCNNGG 3 cut(s) 39, 591, 1403
BsaXI ACNNNNNCTCC 2 cut(s) 1461, 1491
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 468
Bse118I RCCGGY 3 cut(s) 217, 602, 906
Bse3DI GCAATG 3 cut(s) 78, 510, 787
BseBI CCWGG 1 cut(s) 1233
BseDI CCNNGG 3 cut(s) 39, 591, 1403
BseGI GGATG 5 cut(s) 49, 361, 1006, 1387, 1430
BseLI CCNNNNNNNGG 2 cut(s) 351, 468
BseMI GCAATG 3 cut(s) 78, 510, 787
BseMII CTCAG 3 cut(s) 759, 926, 1083
BseRI GAGGAG 2 cut(s) 68, 440
BseXI GCAGC 4 cut(s) 235, 238, 1189, 1289
BshFI GGCC 4 cut(s) 112, 237, 910, 1126
BsiHKAI GWGCWC 2 cut(s) 89, 1358
BsiSI CCGG 5 cut(s) 218, 591, 603, 907, 1135
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 351, 468
BsmAI GTCTC 1 cut(s) 1462
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 4 cut(s) 112, 237, 910, 1126
Bsp119I TTCGAA 1 cut(s) 883
Bsp1286I GDGCHC 3 cut(s) 89, 1165, 1358
Bsp1407I TGTACA 1 cut(s) 645
BspACI CCGC 1 cut(s) 575
BspANI GGCC 4 cut(s) 112, 237, 910, 1126
BspCNI CTCAG 3 cut(s) 758, 925, 1084
BspHI TCATGA 4 cut(s) 534, 714, 1182, 1224
BspLI GGNNCC 2 cut(s) 273, 1545
BspMI ACCTGC 1 cut(s) 1309
BspPI GGATC 6 cut(s) 438, 513, 1057, 1379, 1394, 1464
BspT104I TTCGAA 1 cut(s) 883
BsrDI GCAATG 3 cut(s) 78, 510, 787
BsrFI RCCGGY 3 cut(s) 217, 602, 906
BsrGI TGTACA 1 cut(s) 645
BssAI RCCGGY 3 cut(s) 217, 602, 906
BssECI CCNNGG 3 cut(s) 39, 591, 1403
BssNAI GTATAC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 1403
Bst1107I GTATAC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 1233
Bst4CI ACNGT 2 cut(s) 645, 1465
Bst6I CTCTTC 3 cut(s) 137, 147, 385
BstAUI TGTACA 1 cut(s) 645
BstBI TTCGAA 1 cut(s) 883
BstC8I GCNNGC 2 cut(s) 85, 868
BstDEI CTNAG 3 cut(s) 745, 912, 1092
BstF5I GGATG 5 cut(s) 49, 361, 1006, 1387, 1430
BstH2I RGCGCY 1 cut(s) 1509
BstHHI GCGC 2 cut(s) 18, 1508
BstMAI GTCTC 1 cut(s) 1462
BstMWI GCNNNNNNNGC 3 cut(s) 24, 603, 1283
BstNI CCWGG 1 cut(s) 1233
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 2 cut(s) 590, 1231
BstV1I GCAGC 4 cut(s) 235, 238, 1189, 1289
BstX2I RGATCY 3 cut(s) 430, 505, 1399
BstYI RGATCY 3 cut(s) 430, 505, 1399
BstZ17I GTATAC 1 cut(s) 7
BsuI GTATCC 2 cut(s) 335, 1325
BsuRI GGCC 4 cut(s) 112, 237, 910, 1126
BtsCI GGATG 5 cut(s) 49, 361, 1006, 1387, 1430
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 420, 641, 1470
BveI ACCTGC 1 cut(s) 1309
Cac8I GCNNGC 2 cut(s) 85, 868
CciI TCATGA 4 cut(s) 534, 714, 1182, 1224
CfoI GCGC 2 cut(s) 18, 1508
Cfr10I RCCGGY 3 cut(s) 217, 602, 906
Cfr13I GGNCC 3 cut(s) 111, 236, 1544
Csp6I GTAC 5 cut(s) 243, 342, 646, 771, 1324
CviQI GTAC 5 cut(s) 243, 342, 646, 771, 1324
DdeI CTNAG 3 cut(s) 745, 912, 1092
Eam1104I CTCTTC 3 cut(s) 137, 147, 385
EarI CTCTTC 3 cut(s) 137, 147, 385
Ecl136II GAGCTC 2 cut(s) 87, 1356
Eco130I CCWWGG 1 cut(s) 1403
Eco24I GRGCYC 3 cut(s) 89, 1165, 1358
Eco47I GGWCC 1 cut(s) 1544
Eco53kI GAGCTC 2 cut(s) 87, 1356
Eco57I CTGAAG 2 cut(s) 270, 819
EcoICRI GAGCTC 2 cut(s) 87, 1356
EcoO109I RGGNCCY 2 cut(s) 236, 1544
EcoRII CCWGG 1 cut(s) 1231
EcoT14I CCWWGG 1 cut(s) 1403
EcoT38I GRGCYC 3 cut(s) 89, 1165, 1358
ErhI CCWWGG 1 cut(s) 1403
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 531
FblI GTMKAC 3 cut(s) 6, 393, 612
Fnu4HI GCNGC 4 cut(s) 249, 252, 1203, 1278
FokI GGATG 5 cut(s) 56, 368, 993, 1394, 1437
FriOI GRGCYC 3 cut(s) 89, 1165, 1358
Fsp4HI GCNGC 4 cut(s) 249, 252, 1203, 1278
FspBI CTAG 2 cut(s) 240, 893
GlaI GCGC 2 cut(s) 17, 1507
GluI GCNGC 4 cut(s) 249, 252, 1203, 1278
HaeII RGCGCY 1 cut(s) 1509
HaeIII GGCC 4 cut(s) 112, 237, 910, 1126
HapII CCGG 5 cut(s) 218, 591, 603, 907, 1135
HhaI GCGC 2 cut(s) 18, 1508
Hin6I GCGC 2 cut(s) 16, 1506
HinP1I GCGC 2 cut(s) 16, 1506
HindIII AAGCTT 3 cut(s) 116, 944, 1310
HinfI GANTC 5 cut(s) 64, 398, 842, 984, 1534
HpaII CCGG 5 cut(s) 218, 591, 603, 907, 1135
HphI GGTGA 4 cut(s) 115, 184, 207, 1093
Hpy166II GTNNAC 3 cut(s) 7, 394, 613
Hpy8I GTNNAC 3 cut(s) 7, 394, 613
HpyAV CCTTC 4 cut(s) 227, 286, 384, 667
HpyCH4III ACNGT 2 cut(s) 645, 1465
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 6 cut(s) 71, 266, 515, 941, 1000, 1304
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 603, 1283
HpyF3I CTNAG 3 cut(s) 745, 912, 1092
HpySE526I ACGT 1 cut(s) 609
HspAI GCGC 2 cut(s) 16, 1506
Ksp22I TGATCA 1 cut(s) 531
LmnI GCTCC 2 cut(s) 277, 299
Lsp1109I GCAGC 4 cut(s) 235, 238, 1189, 1289
LweI GCATC 2 cut(s) 253, 1015
MaeI CTAG 2 cut(s) 240, 893
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 5 cut(s) 92, 190, 289, 1411, 1557
MboII GAAGA 8 cut(s) 59, 124, 134, 276, 372, 379, 430, 837
MfeI CAATTG 1 cut(s) 703
MflI RGATCY 3 cut(s) 430, 505, 1399
MhlI GDGCHC 3 cut(s) 89, 1165, 1358
MluCI AATT 7 cut(s) 620, 695, 703, 819, 971, 1072, 1168
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 3 cut(s) 460, 483, 583
MseI TTAA 3 cut(s) 624, 758, 1395
MslI CAYNNNNRTG 2 cut(s) 549, 1439
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 5 cut(s) 218, 591, 603, 907, 1135
MspR9I CCNGG 2 cut(s) 592, 1233
MunI CAATTG 1 cut(s) 703
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 1 cut(s) 1233
MwoI GCNNNNNNNGC 3 cut(s) 24, 603, 1283
NciI CCSGG 1 cut(s) 592
NlaIV GGNNCC 2 cut(s) 273, 1545
NmuCI GTSAC 3 cut(s) 190, 289, 1557
NspI RCATGY 1 cut(s) 941
NspV TTCGAA 1 cut(s) 883
PagI TCATGA 4 cut(s) 534, 714, 1182, 1224
PctI GAATGC 1 cut(s) 868
PfeI GAWTC 4 cut(s) 398, 842, 984, 1534
PflMI CCANNNNNTGG 1 cut(s) 468
PkrI GCNGC 4 cut(s) 250, 253, 1204, 1279
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PpuMI RGGWCCY 1 cut(s) 1544
Psp124BI GAGCTC 2 cut(s) 89, 1358
Psp5II RGGWCCY 1 cut(s) 1544
Psp6I CCWGG 1 cut(s) 1231
PspGI CCWGG 1 cut(s) 1231
PspN4I GGNNCC 2 cut(s) 273, 1545
PspPI GGNCC 3 cut(s) 111, 236, 1544
PspPPI RGGWCCY 1 cut(s) 1544
PsuI RGATCY 3 cut(s) 430, 505, 1399
RsaI GTAC 5 cut(s) 244, 343, 647, 772, 1325
RsaNI GTAC 5 cut(s) 243, 342, 646, 771, 1324
RseI CAYNNNNRTG 2 cut(s) 549, 1439
SacI GAGCTC 2 cut(s) 89, 1358
SaqAI TTAA 3 cut(s) 624, 758, 1395
SatI GCNGC 4 cut(s) 249, 252, 1203, 1278
Sau96I GGNCC 3 cut(s) 111, 236, 1544
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 592, 1233
SduI GDGCHC 3 cut(s) 89, 1165, 1358
SfaNI GCATC 2 cut(s) 253, 1015
SfuI TTCGAA 1 cut(s) 883
SinI GGWCC 1 cut(s) 1544
SmiMI CAYNNNNRTG 2 cut(s) 549, 1439
SmlI CTYRAG 1 cut(s) 1451
SmoI CTYRAG 1 cut(s) 1451
Sse9I AATT 7 cut(s) 620, 695, 703, 819, 971, 1072, 1168
SsiI CCGC 1 cut(s) 575
SspI AATATT 3 cut(s) 481, 722, 1552
SspMI CTAG 2 cut(s) 240, 893
SstI GAGCTC 2 cut(s) 89, 1358
StyD4I CCNGG 2 cut(s) 590, 1231
StyI CCWWGG 1 cut(s) 1403
TaaI ACNGT 2 cut(s) 645, 1465
TaiI ACGT 1 cut(s) 612
TaqI TCGA 4 cut(s) 876, 883, 1042, 1172
TasI AATT 7 cut(s) 620, 695, 703, 819, 971, 1072, 1168
TatI WGTACW 3 cut(s) 242, 645, 1323
TfiI GAWTC 4 cut(s) 398, 842, 984, 1534
Tru1I TTAA 3 cut(s) 624, 758, 1395
Tru9I TTAA 3 cut(s) 624, 758, 1395
TscAI CASTG 3 cut(s) 420, 648, 1470
TseFI GTSAC 3 cut(s) 190, 289, 1557
TseI GCWGC 4 cut(s) 248, 251, 1202, 1277
Tsp45I GTSAC 3 cut(s) 190, 289, 1557
TspGWI ACGGA 2 cut(s) 317, 758
TspRI CASTG 3 cut(s) 420, 648, 1470
Van91I CCANNNNNTGG 1 cut(s) 468
VpaK11BI GGWCC 1 cut(s) 1544
XapI RAATTY 5 cut(s) 620, 695, 819, 1072, 1168
XceI RCATGY 1 cut(s) 941
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XmiI GTMKAC 3 cut(s) 6, 393, 612
XspI CTAG 2 cut(s) 240, 893
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.