Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002314

Physical Location & Seq

Genomic Coordinates Forward (+)

29061926 .. 29062863

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1211600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGGGTCTTCAAACTCTGGTTACTACAAAAGAACAAGGCCCAAGCTTCTCTCTTTCGCCTTGCTGCTGACGATATGGTTGCATATGCTCCCTCGAGTTCTTCAATCTCTAACGGTAGAATTCTCTGCTTCTCAGTGGCTTCTATTTGGAATCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

53

Amino Acids

5.99

Weight (kDa)

9.99

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41640 AT2G41640 AT2G41640 AT3G57380 AT3G57380 AT3G57380
fragaria_vesca	FvH4_6g23970 FvH4_6g24320
malus_domestica	MD00G1122300.v1.1 MD12G1075400.v1.1 MD12G1075900.v1.1 MD12G1211600.v1.1 MD14G1073900.v1.1 MD14G1074300.v1.1
prunus_persica	Prupe.7G055600_v2.0.a1 Prupe.7G055700_v2.0.a1
pyrus_communis	pycom12g06490 pycom12g06530 pycom14g06320
rosa_chinensis	RchiOBHm_Chr3g0483201 RchiOBHm_Chr3g0483241
rosa_laevigata	RLG00000023295 RLG00000023297 RLG00000023299
rosa_multiflora	Rmu_sc0000058.1_g000002 Rmu_sc0004790.1_g000011 Rmu_sc0007550.1_g000006 Rmu_sc0011066.1_g000001 Rmu_sc0026377.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398530 Rroxscaffold_6G00398550
rosa_rugosa	Rorug03G0204900 Rorug03G0204900
rosa_samantha	Rh3AG253100 Rh3AG253300 Rh3BG290300 Rh3CG287100 Rh3CG287200 Rh3DG282700 Rh3DG282900
rosa_wichuraiana	Rw3G022900 Rw3G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	12, 104
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	51
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	51
BshFI	GGCC	1 cut(s)	40
BshVI	ATCGAT	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	93
BsnI	GGCC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	93
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	145
BspDI	ATCGAT	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	40
BsuTUI	ATCGAT	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	153
CviJI	RGCY	3 cut(s)	40, 46, 139
CviKI_1	RGCY	3 cut(s)	40, 46, 139
DdeI	CTNAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	119
FaiI	YATR	3 cut(s)	76, 84, 86
FauNDI	CATATG	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	1 cut(s)	3
Lsp1109I	GCAGC	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	92
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	1 cut(s)	102
MseI	TTAA	1 cut(s)	157
NdeI	CATATG	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	39
PspXI	VCTCGAGB	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	157
SatI	GCNGC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	39
SetI	ASST	1 cut(s)	48
Sfr274I	CTCGAG	1 cut(s)	93
SgeI	CNNG	6 cut(s)	30, 48, 55, 73, 105, 107
SlaI	CTCGAG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	94, 153
TasI	AATT	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	157
Tru9I	TTAA	1 cut(s)	157
TscAI	CASTG	1 cut(s)	140
TseI	GCWGC	1 cut(s)	64
TspRI	CASTG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.