Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007550.1

Orthogroup ID

OG0002314

Physical Location & Seq

Genomic Coordinates Reverse (-)

28407 .. 31755

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007550.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

atggtataccaccagcgcaggaaaggcgaaaagcctaccgaggatgaagatgaggagggtcagagtcttgcaatggagtgtgcgagctctggttactacaaaagatcaaggcccaagcttctcacctttctcttcatctctcttctctcttgtggcttcatattagtccctcatctgatattttcctctgtcaccactttctctctttcacaatcaccggcagtagaaaacgaaggccctagtactgctgctgctgttatagatgcaaaggctcccttctattcttcagtcactaatggagctatatgttgtgatagaagcagtatccgttcagatgtttgtaccatgaaaggggatgtaagaacacactcgccttcctcttctatcttcgtctacgaatcgcaagacgaagcagtgaagaatgaggaggatctccaacacgaaaagatcagaccatacaccagaaaatgggaaacaaatattatggacaccattgatgagttggatctcattgcaaagaaaaacactctgatcatgaaccatcataaatgtgatgtccaacatgatgttccagcagtgtttttctcaaccgggggctacaccggcaacgtctaccatgaatttaatgatgggataatgccactgtacattacttcccaacatttcaacaagaaggttgtgttcgtcgttcttgaatttcacaattggtgggtcatgaaatattcagacattctttcccatctctcagattatcccttaatagatttccgtactgataagagagttcattgcttccctgaagccattgtcggtttgaaatttcacgatgagctgactgtggattcttcattgatggaaaggaatgcgagcatagtcgagtttcgaaatctcctagacagagcttaccggcctcagatcagaagtctaatgtatgaacatgcaaagctttctgttgttcccaagttgaaaaaaccatcaagaatcaggagaaaagtgcaagagcatccattcaataagccgaagttggttattatatctcgaaatggatcaagggcaataacaaatgagaattttctagtgaaaatggctgagaaagtcgggtttcaagtccaagttttgaggccagatagccagacaatgttagcagagatttattgggctctaaattcgagtgacgtcatgattggggttcatggtgctgccatgacacattttctgttcatgaagcctggttctgtgttcattcaagtcattcctctcggaactgaatgggcagcagaggcatattatggagaacctgcaaagaagcttgggttgaagtacattggataccaaatccttacgaaagagagctcattatatgacaagtatgataaggatgatcctgttcttaaagatccaaggagtgtaaccagaaagggatggcaatacacaaagatgatctatcttgaggatcagacagtgagactacacctcccaagatttcggaagcagttggttggcgcttttgattacaccattgatagattgaatcagcagggtcctaatattcagtcacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

520

Amino Acids

59.72

Weight (kDa)

8.26

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41640 AT2G41640 AT2G41640 AT3G57380 AT3G57380 AT3G57380
fragaria_vesca	FvH4_6g23970 FvH4_6g24320
malus_domestica	MD00G1122300.v1.1 MD12G1075400.v1.1 MD12G1075900.v1.1 MD12G1211600.v1.1 MD14G1073900.v1.1 MD14G1074300.v1.1
prunus_persica	Prupe.7G055600_v2.0.a1 Prupe.7G055700_v2.0.a1
pyrus_communis	pycom12g06490 pycom12g06530 pycom14g06320
rosa_chinensis	RchiOBHm_Chr3g0483201 RchiOBHm_Chr3g0483241
rosa_laevigata	RLG00000023295 RLG00000023297 RLG00000023299
rosa_multiflora	Rmu_sc0000058.1_g000002 Rmu_sc0004790.1_g000011 Rmu_sc0007550.1_g000006 Rmu_sc0011066.1_g000001 Rmu_sc0026377.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398530 Rroxscaffold_6G00398550
rosa_rugosa	Rorug03G0204900 Rorug03G0204900
rosa_samantha	Rh3AG253100 Rh3AG253300 Rh3BG290300 Rh3CG287100 Rh3CG287200 Rh3DG282700 Rh3DG282900
rosa_wichuraiana	Rw3G022900 Rw3G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1179
Acc36I	ACCTGC	1 cut(s)	1306
AccB7I	CCANNNNNTGG	1 cut(s)	468
AccI	GTMKAC	3 cut(s)	6, 393, 612
AclWI	GGATC	6 cut(s)	438, 513, 1054, 1376, 1391, 1461
AcsI	RAATTY	5 cut(s)	620, 695, 818, 1069, 1165
AcuI	CTGAAG	2 cut(s)	270, 819
AcyI	GRCGYC	1 cut(s)	1176
AfaI	GTAC	5 cut(s)	244, 343, 647, 772, 1322
AfiI	CCNNNNNNNGG	2 cut(s)	351, 468
AgsI	TTSAA	9 cut(s)	667, 695, 817, 967, 1012, 1106, 1247, 1318, 1531
AjnI	CCWGG	1 cut(s)	1228
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AluBI	AGCT	8 cut(s)	87, 118, 302, 832, 902, 946, 1309, 1353
AluI	AGCT	8 cut(s)	87, 118, 302, 832, 902, 946, 1309, 1353
Alw21I	GWGCWC	2 cut(s)	89, 1355
Alw26I	GTCTC	1 cut(s)	1459
AlwI	GGATC	6 cut(s)	438, 513, 1054, 1376, 1391, 1461
AoxI	GGCC	4 cut(s)	110, 235, 908, 1121
ApeKI	GCWGC	4 cut(s)	248, 251, 1199, 1274
ApoI	RAATTY	5 cut(s)	620, 695, 818, 1069, 1165
AspLEI	GCGC	2 cut(s)	18, 1505
AspS9I	GGNCC	3 cut(s)	111, 236, 1541
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	3 cut(s)	115, 184, 207
AsuII	TTCGAA	1 cut(s)	883
AvaII	GGWCC	1 cut(s)	1541
BanII	GRGCYC	3 cut(s)	89, 1162, 1355
Bbv12I	GWGCWC	2 cut(s)	89, 1355
BbvI	GCAGC	4 cut(s)	235, 238, 1186, 1286
BccI	CCATC	6 cut(s)	549, 623, 747, 847, 982, 1416
BciT130I	CCWGG	1 cut(s)	1230
BciVI	GTATCC	2 cut(s)	335, 1322
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	1459
BfaI	CTAG	3 cut(s)	240, 893, 1076
BfoI	RGCGCY	1 cut(s)	1506
BfuAI	ACCTGC	1 cut(s)	1306
BfuI	GTATCC	2 cut(s)	335, 1322
BisI	GCNGC	4 cut(s)	249, 252, 1200, 1275
BlsI	GCNGC	4 cut(s)	250, 253, 1201, 1276
BmcAI	AGTACT	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	592, 1230
Bme18I	GGWCC	1 cut(s)	1541
BmgT120I	GGNCC	3 cut(s)	111, 236, 1541
BmiI	GGNNCC	2 cut(s)	273, 1542
BmrFI	CCNGG	2 cut(s)	592, 1230
BmsI	GCATC	2 cut(s)	253, 1012
Bpu14I	TTCGAA	1 cut(s)	883
BpuEI	CTTGAG	1 cut(s)	1469
BpuMI	CCSGG	1 cut(s)	592
BsaHI	GRCGYC	1 cut(s)	1176
BsaJI	CCNNGG	3 cut(s)	39, 591, 1400
BsaXI	ACNNNNNCTCC	2 cut(s)	1458, 1488
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 468
Bse118I	RCCGGY	3 cut(s)	217, 602, 906
Bse3DI	GCAATG	3 cut(s)	78, 510, 787
BseBI	CCWGG	1 cut(s)	1230
BseDI	CCNNGG	3 cut(s)	39, 591, 1400
BseGI	GGATG	5 cut(s)	49, 361, 1003, 1384, 1427
BseLI	CCNNNNNNNGG	2 cut(s)	351, 468
BseMI	GCAATG	3 cut(s)	78, 510, 787
BseMII	CTCAG	3 cut(s)	759, 926, 1080
BseRI	GAGGAG	2 cut(s)	68, 440
BseXI	GCAGC	4 cut(s)	235, 238, 1186, 1286
BshFI	GGCC	4 cut(s)	112, 237, 910, 1123
BsiHKAI	GWGCWC	2 cut(s)	89, 1355
BsiSI	CCGG	4 cut(s)	218, 591, 603, 907
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	351, 468
BsmAI	GTCTC	1 cut(s)	1459
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	4 cut(s)	112, 237, 910, 1123
Bsp119I	TTCGAA	1 cut(s)	883
Bsp1286I	GDGCHC	3 cut(s)	89, 1162, 1355
Bsp1407I	TGTACA	1 cut(s)	645
BspANI	GGCC	4 cut(s)	112, 237, 910, 1123
BspCNI	CTCAG	3 cut(s)	758, 925, 1081
BspHI	TCATGA	4 cut(s)	534, 714, 1179, 1221
BspLI	GGNNCC	2 cut(s)	273, 1542
BspMI	ACCTGC	1 cut(s)	1306
BspPI	GGATC	6 cut(s)	438, 513, 1054, 1376, 1391, 1461
BspT104I	TTCGAA	1 cut(s)	883
BsrDI	GCAATG	3 cut(s)	78, 510, 787
BsrFI	RCCGGY	3 cut(s)	217, 602, 906
BsrGI	TGTACA	1 cut(s)	645
BssAI	RCCGGY	3 cut(s)	217, 602, 906
BssECI	CCNNGG	3 cut(s)	39, 591, 1400
BssNAI	GTATAC	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	1176
BssT1I	CCWWGG	1 cut(s)	1400
Bst1107I	GTATAC	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	1230
Bst4CI	ACNGT	3 cut(s)	645, 838, 1462
Bst6I	CTCTTC	3 cut(s)	137, 147, 385
BstACI	GRCGYC	1 cut(s)	1176
BstAUI	TGTACA	1 cut(s)	645
BstBI	TTCGAA	1 cut(s)	883
BstC8I	GCNNGC	2 cut(s)	85, 868
BstDEI	CTNAG	3 cut(s)	745, 912, 1089
BstF5I	GGATG	5 cut(s)	49, 361, 1003, 1384, 1427
BstH2I	RGCGCY	1 cut(s)	1506
BstHHI	GCGC	2 cut(s)	18, 1505
BstMAI	GTCTC	1 cut(s)	1459
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 603, 1280
BstNI	CCWGG	1 cut(s)	1230
BstNSI	RCATGY	1 cut(s)	941
BstSCI	CCNGG	2 cut(s)	590, 1228
BstV1I	GCAGC	4 cut(s)	235, 238, 1186, 1286
BstX2I	RGATCY	3 cut(s)	430, 505, 1396
BstYI	RGATCY	3 cut(s)	430, 505, 1396
BstZ17I	GTATAC	1 cut(s)	7
BsuI	GTATCC	2 cut(s)	335, 1322
BsuRI	GGCC	4 cut(s)	112, 237, 910, 1123
BtsCI	GGATG	5 cut(s)	49, 361, 1003, 1384, 1427
BtsI	GCAGTG	2 cut(s)	420, 582
BtsIMutI	CAGTG	4 cut(s)	420, 582, 641, 1467
BveI	ACCTGC	1 cut(s)	1306
Cac8I	GCNNGC	2 cut(s)	85, 868
CciI	TCATGA	4 cut(s)	534, 714, 1179, 1221
CfoI	GCGC	2 cut(s)	18, 1505
Cfr10I	RCCGGY	3 cut(s)	217, 602, 906
Cfr13I	GGNCC	3 cut(s)	111, 236, 1541
Csp6I	GTAC	5 cut(s)	243, 342, 646, 771, 1321
CviQI	GTAC	5 cut(s)	243, 342, 646, 771, 1321
DdeI	CTNAG	3 cut(s)	745, 912, 1089
Eam1104I	CTCTTC	3 cut(s)	137, 147, 385
EarI	CTCTTC	3 cut(s)	137, 147, 385
Ecl136II	GAGCTC	2 cut(s)	87, 1353
Eco130I	CCWWGG	1 cut(s)	1400
Eco24I	GRGCYC	3 cut(s)	89, 1162, 1355
Eco47I	GGWCC	1 cut(s)	1541
Eco53kI	GAGCTC	2 cut(s)	87, 1353
Eco57I	CTGAAG	2 cut(s)	270, 819
EcoICRI	GAGCTC	2 cut(s)	87, 1353
EcoO109I	RGGNCCY	2 cut(s)	236, 1541
EcoRII	CCWGG	1 cut(s)	1228
EcoT14I	CCWWGG	1 cut(s)	1400
EcoT38I	GRGCYC	3 cut(s)	89, 1162, 1355
ErhI	CCWWGG	1 cut(s)	1400
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	531
FblI	GTMKAC	3 cut(s)	6, 393, 612
Fnu4HI	GCNGC	4 cut(s)	249, 252, 1200, 1275
FokI	GGATG	5 cut(s)	56, 368, 990, 1391, 1434
FriOI	GRGCYC	3 cut(s)	89, 1162, 1355
Fsp4HI	GCNGC	4 cut(s)	249, 252, 1200, 1275
FspBI	CTAG	3 cut(s)	240, 893, 1076
GlaI	GCGC	2 cut(s)	17, 1504
GluI	GCNGC	4 cut(s)	249, 252, 1200, 1275
HaeII	RGCGCY	1 cut(s)	1506
HaeIII	GGCC	4 cut(s)	112, 237, 910, 1123
HapII	CCGG	4 cut(s)	218, 591, 603, 907
HhaI	GCGC	2 cut(s)	18, 1505
Hin1I	GRCGYC	1 cut(s)	1176
Hin6I	GCGC	2 cut(s)	16, 1503
HinP1I	GCGC	2 cut(s)	16, 1503
HindIII	AAGCTT	3 cut(s)	116, 944, 1307
HinfI	GANTC	5 cut(s)	64, 398, 842, 981, 1531
HpaII	CCGG	4 cut(s)	218, 591, 603, 907
HphI	GGTGA	3 cut(s)	115, 184, 207
Hpy166II	GTNNAC	3 cut(s)	7, 394, 613
Hpy8I	GTNNAC	3 cut(s)	7, 394, 613
Hpy99I	CGWCG	1 cut(s)	689
HpyAV	CCTTC	4 cut(s)	227, 286, 384, 667
HpyCH4III	ACNGT	3 cut(s)	645, 838, 1462
HpyCH4IV	ACGT	2 cut(s)	609, 1176
HpyCH4V	TGCA	6 cut(s)	71, 266, 515, 941, 997, 1301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 603, 1280
HpyF3I	CTNAG	3 cut(s)	745, 912, 1089
HpySE526I	ACGT	2 cut(s)	609, 1176
Hsp92I	GRCGYC	1 cut(s)	1176
HspAI	GCGC	2 cut(s)	16, 1503
Ksp22I	TGATCA	1 cut(s)	531
LmnI	GCTCC	2 cut(s)	277, 299
Lsp1109I	GCAGC	4 cut(s)	235, 238, 1186, 1286
LweI	GCATC	2 cut(s)	253, 1012
MaeI	CTAG	3 cut(s)	240, 893, 1076
MaeII	ACGT	2 cut(s)	609, 1176
MaeIII	GTNAC	6 cut(s)	92, 190, 289, 1172, 1408, 1554
MboII	GAAGA	8 cut(s)	59, 124, 134, 276, 372, 379, 430, 837
MfeI	CAATTG	1 cut(s)	703
MflI	RGATCY	3 cut(s)	430, 505, 1396
MhlI	GDGCHC	3 cut(s)	89, 1162, 1355
MluCI	AATT	6 cut(s)	620, 695, 703, 818, 1069, 1165
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	3 cut(s)	460, 483, 583
MseI	TTAA	3 cut(s)	624, 758, 1392
MslI	CAYNNNNRTG	2 cut(s)	549, 1436
MspI	CCGG	4 cut(s)	218, 591, 603, 907
MspR9I	CCNGG	2 cut(s)	592, 1230
MunI	CAATTG	1 cut(s)	703
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	1230
MwoI	GCNNNNNNNGC	3 cut(s)	24, 603, 1280
NciI	CCSGG	1 cut(s)	592
NlaIV	GGNNCC	2 cut(s)	273, 1542
NmuCI	GTSAC	4 cut(s)	190, 289, 1172, 1554
NspI	RCATGY	1 cut(s)	941
NspV	TTCGAA	1 cut(s)	883
PagI	TCATGA	4 cut(s)	534, 714, 1179, 1221
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	4 cut(s)	398, 842, 981, 1531
PflMI	CCANNNNNTGG	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	250, 253, 1201, 1276
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PpuMI	RGGWCCY	1 cut(s)	1541
Psp124BI	GAGCTC	2 cut(s)	89, 1355
Psp5II	RGGWCCY	1 cut(s)	1541
Psp6I	CCWGG	1 cut(s)	1228
PspGI	CCWGG	1 cut(s)	1228
PspN4I	GGNNCC	2 cut(s)	273, 1542
PspPI	GGNCC	3 cut(s)	111, 236, 1541
PspPPI	RGGWCCY	1 cut(s)	1541
PsuI	RGATCY	3 cut(s)	430, 505, 1396
RsaI	GTAC	5 cut(s)	244, 343, 647, 772, 1322
RsaNI	GTAC	5 cut(s)	243, 342, 646, 771, 1321
RseI	CAYNNNNRTG	2 cut(s)	549, 1436
SacI	GAGCTC	2 cut(s)	89, 1355
SaqAI	TTAA	3 cut(s)	624, 758, 1392
SatI	GCNGC	4 cut(s)	249, 252, 1200, 1275
Sau96I	GGNCC	3 cut(s)	111, 236, 1541
ScaI	AGTACT	1 cut(s)	244
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	592, 1230
SduI	GDGCHC	3 cut(s)	89, 1162, 1355
SfaNI	GCATC	2 cut(s)	253, 1012
SfuI	TTCGAA	1 cut(s)	883
SinI	GGWCC	1 cut(s)	1541
SmiMI	CAYNNNNRTG	2 cut(s)	549, 1436
SmlI	CTYRAG	1 cut(s)	1448
SmoI	CTYRAG	1 cut(s)	1448
Sse9I	AATT	6 cut(s)	620, 695, 703, 818, 1069, 1165
SspI	AATATT	3 cut(s)	481, 722, 1549
SspMI	CTAG	3 cut(s)	240, 893, 1076
SstI	GAGCTC	2 cut(s)	89, 1355
StyD4I	CCNGG	2 cut(s)	590, 1228
StyI	CCWWGG	1 cut(s)	1400
TaaI	ACNGT	3 cut(s)	645, 838, 1462
TaiI	ACGT	2 cut(s)	612, 1179
TaqI	TCGA	4 cut(s)	876, 883, 1039, 1169
TasI	AATT	6 cut(s)	620, 695, 703, 818, 1069, 1165
TatI	WGTACW	3 cut(s)	242, 645, 1320
TfiI	GAWTC	4 cut(s)	398, 842, 981, 1531
Tru1I	TTAA	3 cut(s)	624, 758, 1392
Tru9I	TTAA	3 cut(s)	624, 758, 1392
TscAI	CASTG	4 cut(s)	420, 582, 648, 1467
TseFI	GTSAC	4 cut(s)	190, 289, 1172, 1554
TseI	GCWGC	4 cut(s)	248, 251, 1199, 1274
Tsp45I	GTSAC	4 cut(s)	190, 289, 1172, 1554
TspGWI	ACGGA	2 cut(s)	317, 758
TspRI	CASTG	4 cut(s)	420, 582, 648, 1467
Van91I	CCANNNNNTGG	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	1541
XapI	RAATTY	5 cut(s)	620, 695, 818, 1069, 1165
XceI	RCATGY	1 cut(s)	941
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	3 cut(s)	6, 393, 612
XspI	CTAG	3 cut(s)	240, 893, 1076
ZraI	GACGTC	1 cut(s)	1177
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.