AT3G57380

EGF domain-specific O-linked N-acetylglucosamine transferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002314
Physical Location & Seq
Forward (+)
21229727 .. 21231833
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57380.3

Sequence Viewer

Length: 1515 bp
ATGGTTCAATACAAAAGACTAATTAAAAAAGGAGAAAAGCATAGACTTTCGGTAGAAGAAGGTGGTTCCGGTGCCTCCGCCGTCACTGTCTCCGGCGGTGTGTACTCAAAGACAGCCAAACAGAAGCTTCTCTTAACTATCTTTCTCTCTTTGCTCTCATGCTGTTACATCTTCAGCTTCTCCTCTTTCTCTCTTCTAGGTGCTTTTAGCAGAGAAAGTAAAGGATTTGGTCCTTATGAACTGTTCATTGCACCTCTTTGTTCAGGAACCTCTAATGGAACAATTTGTTGTGACAGAACCGGTTCTAGATCCGACGTTTGTATCATGAAAGGAGACGTTAGGACACACTCTGCTTCGTCATCAGTCTTCCTCTTCACTTCCCTCAAAAACAAGACCAAGATCACGAAAAAGATCAAACCTTACACAAGAAAATGGGAAACAAGTGTGATGCAAACAGTTCAAGAACTCAATCTCGTTTACAGAGATGAAGAAAACAATTCTTTAGTCGTCTCCTCTGTTAATGACATCTGCGATGTGTTCTATAACGTTCCTGCTGTGTTTTTCTCAACTGGTGGATATACAGGAAATGTTTACCACGAATTCAACGATGGAATCATCCCTTTGTTCATCACTTCACATCATTTCAACAAGAAGGTTGTGTTTGTGATTGTTGAGTATCATAGTTGGTGGATTATGAAATATGGAGATATCGTTTCTCAGCTATCAGATTATCCTCCTGTCGACTTTAACGGCGACAAGAGAACACATTGTTTCAAGGAAGCTATTGTGGGATTGAAGATTCACGACGAGTTAACCGTTGAATCATCGTTGATGCTTGGGAATAAAACAATTCTTGATTTCAGAAATGTGCTGGATCAGGCTTATTGGCCACGTATCCATGGATTGATTCAAGAGGAAGAACTCAAGGCAGCTAACAAGACAGAAGACGGTTTCAAGAAACCAATATTGGTGATTCTGTCTAGAAATGGATCGAGGGAGATACTAAATGAGAGTCTTTTGGTTGAATTAGCTGAGGAAATTGGATTCATCGTCCATGTTTTGAGACCGGATAAAACAACAGAGCTGGCAAAAATCTACAGATGTTTGAATTCTAGTGATGTGATGATTGGTGTTCACGGAGCTGCAATGACACATTTACTTTTCTTGAAACCGAAAACAGTCTTTATACAGATTATACCAATAGGAACCGAATGGGCTGCTGAGACTTACTATGGTAAACCAGCTAAGAAGATGAGATTGAAGTACATTGGTTACAAGATTAAACCGAAAGAGAGCTCTTTGTACGATGAATATGGCATCGATGATCCCATTATCCGAGATCCTAAGAGTTTTACTCAAAAAGGATGGGATTACACTAAGAAGATTTATCTTGAGCGCCAAAACGTGAAGCTTGATTTGAAAAGATTTAGGAAACCGTTGTCTCGTGCTTATGATTTCTCGATGAAGCGAATTGGACTGGTGTATATCAGTCACAAACCGGATGTTACCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

504

Amino Acids

57.33

Weight (kDa)

9.15

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 205 - 288 3.4e-12 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 741
AciI CCGC 2 cut(s) 78, 96
AclI AACGTT 1 cut(s) 546
AclWI GGATC 5 cut(s) 303, 882, 997, 1319, 1334
AcoI YGGCCR 1 cut(s) 887
AcsI RAATTY 2 cut(s) 599, 1108
AcuI CTGAAG 1 cut(s) 157
AfaI GTAC 3 cut(s) 104, 1265, 1304
AgeI ACCGGT 1 cut(s) 299
AjuI GAANNNNNNNTTGG 2 cut(s) 950, 982
Alw21I GWGCWC 1 cut(s) 1298
Alw26I GTCTC 6 cut(s) 94, 327, 514, 1057, 1217, 1446
AlwI GGATC 5 cut(s) 303, 882, 997, 1319, 1334
AoxI GGCC 1 cut(s) 887
ApeKI GCWGC 3 cut(s) 929, 1142, 1217
ApoI RAATTY 2 cut(s) 599, 1108
AsiGI ACCGGT 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 1398
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 982
AvaII GGWCC 1 cut(s) 230
BaeI ACNNNNGTAYC 2 cut(s) 304, 337
BalI TGGCCA 1 cut(s) 889
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 1298
BauI CACGAG 1 cut(s) 1443
BbsI GAAGAC 2 cut(s) 358, 951
Bbv12I GWGCWC 1 cut(s) 1298
BbvCI CCTCAGC 1 cut(s) 1032
BbvI GCAGC 3 cut(s) 941, 1129, 1204
BccI CCATC 2 cut(s) 602, 1359
BceAI ACGGC 2 cut(s) 65, 766
BcgI CGANNNNNNTGC 2 cut(s) 1199, 1233
BciVI GTATCC 1 cut(s) 905
BcoDI GTCTC 6 cut(s) 94, 327, 514, 1057, 1217, 1446
BfaI CTAG 4 cut(s) 197, 306, 981, 1113
BfmI CTRYAG 1 cut(s) 1096
BfoI RGCGCY 1 cut(s) 1399
BfuI GTATCC 1 cut(s) 905
BisI GCNGC 3 cut(s) 930, 1143, 1218
BlsI GCNGC 3 cut(s) 931, 1144, 1219
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 4 cut(s) 67, 73, 268, 1207
BmsI GCATC 3 cut(s) 438, 822, 1326
BpiI GAAGAC 2 cut(s) 358, 951
BplI GAGNNNNNCTC 2 cut(s) 1339, 1371
Bpu10I CCTNAGC 1 cut(s) 1032
BpuEI CTTGAG 2 cut(s) 908, 1412
Bsa29I ATCGAT 1 cut(s) 1320
BsaAI YACGTR 1 cut(s) 893
BsaI GGTCTC 1 cut(s) 1057
BsaJI CCNNGG 1 cut(s) 898
BsaWI WCCGGW 4 cut(s) 68, 299, 1066, 1498
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 574, 1482
Bse3DI GCAATG 2 cut(s) 246, 1152
BseCI ATCGAT 1 cut(s) 1320
BseDI CCNNGG 1 cut(s) 898
BseGI GGATG 3 cut(s) 615, 1370, 1507
BseMI GCAATG 2 cut(s) 246, 1152
BseMII CTCAG 3 cut(s) 731, 1023, 1212
BseNI ACTGG 2 cut(s) 574, 1482
BseRI GAGGAG 2 cut(s) 172, 502
BseXI GCAGC 3 cut(s) 941, 1129, 1204
BshFI GGCC 1 cut(s) 889
BshNI GGYRCC 1 cut(s) 71
BshTI ACCGGT 1 cut(s) 299
BshVI ATCGAT 1 cut(s) 1320
BsiHKAI GWGCWC 1 cut(s) 1298
BsiSI CCGG 5 cut(s) 69, 93, 300, 1067, 1499
BsmAI GTCTC 6 cut(s) 94, 327, 514, 1057, 1217, 1446
BsmBI CGTCTC 2 cut(s) 327, 514
BsnI GGCC 1 cut(s) 889
Bso31I GGTCTC 1 cut(s) 1057
Bsp1286I GDGCHC 1 cut(s) 1298
Bsp143I GATC 7 cut(s) 308, 399, 411, 874, 989, 1324, 1339
Bsp19I CCATGG 1 cut(s) 898
BspACI CCGC 2 cut(s) 78, 96
BspANI GGCC 1 cut(s) 889
BspCNI CTCAG 3 cut(s) 730, 1024, 1213
BspDI ATCGAT 1 cut(s) 1320
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 4 cut(s) 67, 73, 268, 1207
BspPI GGATC 5 cut(s) 303, 882, 997, 1319, 1334
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 1057
BsrDI GCAATG 2 cut(s) 246, 1152
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 2 cut(s) 574, 1482
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 898
BssMI GATC 7 cut(s) 308, 399, 411, 874, 989, 1324, 1339
BssSI CACGAG 1 cut(s) 1443
BssT1I CCWWGG 1 cut(s) 898
Bst2BI CACGAG 1 cut(s) 1443
Bst4CI ACNGT 7 cut(s) 88, 243, 457, 817, 950, 1180, 1437
Bst6I CTCTTC 2 cut(s) 198, 377
BstBAI YACGTR 1 cut(s) 893
BstC8I GCNNGC 1 cut(s) 1086
BstDEI CTNAG 6 cut(s) 717, 1032, 1221, 1245, 1344, 1377
BstDSI CCRYGG 1 cut(s) 898
BstF5I GGATG 3 cut(s) 615, 1370, 1507
BstH2I RGCGCY 1 cut(s) 1399
BstHHI GCGC 1 cut(s) 1398
BstKTI GATC 7 cut(s) 311, 402, 414, 877, 992, 1327, 1342
BstMAI GTCTC 6 cut(s) 94, 327, 514, 1057, 1217, 1446
BstMBI GATC 7 cut(s) 308, 399, 411, 874, 989, 1324, 1339
BstSFI CTRYAG 1 cut(s) 1096
BstV1I GCAGC 3 cut(s) 941, 1129, 1204
BstV2I GAAGAC 2 cut(s) 358, 951
BstX2I RGATCY 2 cut(s) 308, 1339
BstYI RGATCY 2 cut(s) 308, 1339
Bsu15I ATCGAT 1 cut(s) 1320
BsuI GTATCC 1 cut(s) 905
BsuRI GGCC 1 cut(s) 889
BsuTUI ATCGAT 1 cut(s) 1320
BtgI CCRYGG 1 cut(s) 898
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 3 cut(s) 615, 1370, 1507
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 1086
CciI TCATGA 1 cut(s) 324
CfoI GCGC 1 cut(s) 1398
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 1320
Csp6I GTAC 3 cut(s) 103, 1264, 1303
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 4 cut(s) 159, 325, 899, 1055
CviQI GTAC 3 cut(s) 103, 1264, 1303
DdeI CTNAG 6 cut(s) 717, 1032, 1221, 1245, 1344, 1377
DpnI GATC 7 cut(s) 310, 401, 413, 876, 991, 1326, 1341
DpnII GATC 7 cut(s) 308, 399, 411, 874, 989, 1324, 1339
EaeI YGGCCR 1 cut(s) 887
Eam1104I CTCTTC 2 cut(s) 198, 377
EarI CTCTTC 2 cut(s) 198, 377
EciI GGCGGA 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 1296
Eco130I CCWWGG 1 cut(s) 898
Eco24I GRGCYC 1 cut(s) 1298
Eco31I GGTCTC 1 cut(s) 1057
Eco32I GATATC 1 cut(s) 709
Eco47I GGWCC 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 1296
Eco57I CTGAAG 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 1296
EcoRI GAATTC 2 cut(s) 599, 1108
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 1298
ErhI CCWWGG 1 cut(s) 898
Esp3I CGTCTC 2 cut(s) 327, 514
FaeI CATG 4 cut(s) 162, 328, 902, 1058
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 4 cut(s) 158, 324, 898, 1054
FblI GTMKAC 1 cut(s) 741
Fnu4HI GCNGC 3 cut(s) 930, 1143, 1218
FokI GGATG 2 cut(s) 602, 1377
FriOI GRGCYC 1 cut(s) 1298
Fsp4HI GCNGC 3 cut(s) 930, 1143, 1218
FspBI CTAG 4 cut(s) 197, 306, 981, 1113
GlaI GCGC 1 cut(s) 1397
GluI GCNGC 3 cut(s) 930, 1143, 1218
HaeII RGCGCY 1 cut(s) 1399
HaeIII GGCC 1 cut(s) 889
HapII CCGG 5 cut(s) 69, 93, 300, 1067, 1499
HhaI GCGC 1 cut(s) 1398
Hin1II CATG 4 cut(s) 162, 328, 902, 1058
Hin6I GCGC 1 cut(s) 1396
HinP1I GCGC 1 cut(s) 1396
HincII GTYRAC 2 cut(s) 742, 813
HindII GTYRAC 2 cut(s) 742, 813
HindIII AAGCTT 2 cut(s) 125, 1409
HinfI GANTC 7 cut(s) 612, 799, 821, 907, 973, 1012, 1044
HpaI GTTAAC 1 cut(s) 813
HpaII CCGG 5 cut(s) 69, 93, 300, 1067, 1499
HphI GGTGA 1 cut(s) 982
Hpy166II GTNNAC 7 cut(s) 103, 478, 592, 742, 813, 1135, 1238
Hpy188I TCNGA 4 cut(s) 313, 727, 863, 1337
Hpy8I GTNNAC 7 cut(s) 103, 478, 592, 742, 813, 1135, 1238
Hpy99I CGWCG 2 cut(s) 317, 809
HpyAV CCTTC 2 cut(s) 53, 646
HpyCH4III ACNGT 7 cut(s) 88, 243, 457, 817, 950, 1180, 1437
HpyCH4IV ACGT 5 cut(s) 315, 336, 546, 892, 1404
HpyCH4V TGCA 3 cut(s) 251, 451, 1145
HpyF3I CTNAG 6 cut(s) 717, 1032, 1221, 1245, 1344, 1377
HpySE526I ACGT 5 cut(s) 315, 336, 546, 892, 1404
Hsp92II CATG 4 cut(s) 162, 328, 902, 1058
HspAI GCGC 1 cut(s) 1396
KspAI GTTAAC 1 cut(s) 813
Kzo9I GATC 7 cut(s) 308, 399, 411, 874, 989, 1324, 1339
LmnI GCTCC 1 cut(s) 1139
Lsp1109I GCAGC 3 cut(s) 941, 1129, 1204
LweI GCATC 3 cut(s) 438, 822, 1326
MaeI CTAG 4 cut(s) 197, 306, 981, 1113
MaeII ACGT 5 cut(s) 315, 336, 546, 892, 1404
MaeIII GTNAC 6 cut(s) 82, 164, 290, 1271, 1490, 1504
MalI GATC 7 cut(s) 310, 401, 413, 876, 991, 1326, 1341
MboI GATC 7 cut(s) 308, 399, 411, 874, 989, 1324, 1339
MflI RGATCY 2 cut(s) 308, 1339
MhlI GDGCHC 1 cut(s) 1298
MlsI TGGCCA 1 cut(s) 889
MluNI TGGCCA 1 cut(s) 889
MlyI GAGTC 1 cut(s) 1021
MmeI TCCRAC 1 cut(s) 336
Mox20I TGGCCA 1 cut(s) 889
MroXI GAANNNNTTC 1 cut(s) 301
MscI TGGCCA 1 cut(s) 889
MseI TTAA 7 cut(s) 24, 134, 519, 747, 812, 1281, 1513
Msp20I TGGCCA 1 cut(s) 889
MspI CCGG 5 cut(s) 69, 93, 300, 1067, 1499
NcoI CCATGG 1 cut(s) 898
NdeII GATC 7 cut(s) 308, 399, 411, 874, 989, 1324, 1339
NlaIII CATG 4 cut(s) 162, 328, 902, 1058
NlaIV GGNNCC 4 cut(s) 67, 73, 268, 1207
NmuCI GTSAC 3 cut(s) 82, 290, 1490
PagI TCATGA 1 cut(s) 324
PcsI WCGNNNNNNNCGW 2 cut(s) 603, 813
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 6 cut(s) 612, 799, 821, 907, 973, 1044
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 3 cut(s) 931, 1144, 1219
PleI GAGTC 1 cut(s) 1020
PpsI GAGTC 1 cut(s) 1020
Ppu21I YACGTR 1 cut(s) 893
Psp124BI GAGCTC 1 cut(s) 1298
Psp1406I AACGTT 1 cut(s) 546
PspN4I GGNNCC 4 cut(s) 67, 73, 268, 1207
PspPI GGNCC 1 cut(s) 230
PsuI RGATCY 2 cut(s) 308, 1339
RsaI GTAC 3 cut(s) 104, 1265, 1304
RsaNI GTAC 3 cut(s) 103, 1264, 1303
SacI GAGCTC 1 cut(s) 1298
SalI GTCGAC 1 cut(s) 740
SaqAI TTAA 7 cut(s) 24, 134, 519, 747, 812, 1281, 1513
SatI GCNGC 3 cut(s) 930, 1143, 1218
Sau3AI GATC 7 cut(s) 308, 399, 411, 874, 989, 1324, 1339
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 1021
SduI GDGCHC 1 cut(s) 1298
SfaNI GCATC 3 cut(s) 438, 822, 1326
SfcI CTRYAG 1 cut(s) 1096
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 923, 1391
SmoI CTYRAG 2 cut(s) 923, 1391
SsiI CCGC 2 cut(s) 78, 96
SspI AATATT 1 cut(s) 966
SspMI CTAG 4 cut(s) 197, 306, 981, 1113
SstI GAGCTC 1 cut(s) 1298
StyI CCWWGG 1 cut(s) 898
TaaI ACNGT 7 cut(s) 88, 243, 457, 817, 950, 1180, 1437
TaiI ACGT 5 cut(s) 318, 339, 549, 895, 1407
TaqI TCGA 4 cut(s) 741, 992, 1320, 1460
TatI WGTACW 2 cut(s) 102, 1263
TfiI GAWTC 6 cut(s) 612, 799, 821, 907, 973, 1044
Tru1I TTAA 7 cut(s) 24, 134, 519, 747, 812, 1281, 1513
Tru9I TTAA 7 cut(s) 24, 134, 519, 747, 812, 1281, 1513
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 3 cut(s) 82, 290, 1490
TseI GCWGC 3 cut(s) 929, 1142, 1217
Tsp45I GTSAC 3 cut(s) 82, 290, 1490
TspDTI ATGAA 9 cut(s) 235, 252, 341, 501, 616, 710, 1036, 1323, 1478
TspGWI ACGGA 1 cut(s) 1152
TspRI CASTG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 2 cut(s) 599, 1108
XbaI TCTAGA 2 cut(s) 305, 980
XmiI GTMKAC 1 cut(s) 741
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 4 cut(s) 197, 306, 981, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.