FvH4_6g24320

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002314
Physical Location & Seq
Reverse (-)
18396122 .. 18399042
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24320.t1

Sequence Viewer

Length: 1614 bp
ATGGTGCGCTATCAGCGGTGTCATCAGTGGAGAAAAGGTGAAAAGCATATAGACGAAGATGAAGAGTCTCAGACGTTTCTGATGGATTTTGCTAACTCTGGTTATTACAAAAGATCAAGCCCCAAGCTTCTCTATCTTCTCTTCATCTCTCTTCTCTCTTGCAGCTTCATATTAGCCCCTCACCTCTTCAGCTCCAGCACCACTTTCTCTCTCTTATATTCAACTCTGATAGAAGATGAAGGGCTTGTTGCTGATATGAATATAAATGCTCCCCTCTGTTCTTCTATCTCTAATGGAGCTATATGTTGTGATCGTAGCAGTATTCGTTCAGATATTTGTATCATGAAAGGGGATGTAAGAACCCAGTCTACTTCCTTTTCGATCTTTGTCTATGGATCTGAAGACAGAAGTAGCTCCAATAGTCAGTTTTCAGGTATCGTCGGGGAAAATGAAGATGGGGAACTCCAACATGAAAGAATCAAACCATATACCCGGAAATGGGAAACTAGTGTGATGAACACCATTGATGAATTACACCTCATTGCAAAGAAAGACAGTACTCTAGACCTGTACGAACAACAGTGTGATGTCCAACATGATGTTCCAGCTGTGTTTTTTTCGACTGGGGGCTATACCGGTAATGTTTATCATGAATTCAATGATGGGATTCTGCCACTGTACATTACTTCCCAGCATTTCAACAAGAAGGTTGTGTTTGTCATTCAGGATTATCATAATTGGTGGGTCATGAAATATGGAGACATTCTTTCGCAGCTATCTGATTATCCACCTATAGACTATAGTGGAGATAAGAGAACACATTGCTTCCCTGAGGCCATTGTTGGTCTGAGAATTCATGACGAGCTCTCTATTGATTCTTCACTGATGGAGAGGAATAAGGACATTGTTGATTTCAGGGATCTCCTAGACCGAGCATACTGGCCTCGAATTAGAGGTCTAATTCAAGATGAGGAACGAGAAGCACAAGAGAAGCTTTCAGTGTCTCCCACATTTGAAAGCTCCTTACAGATGAAAAAAGAAGTGCAAGGAGATCAACTTGTGAAGAAGCCGAAACTGCTAATCATATCTCGGAATGGATCAAGAGCGATAACTAATGAAGATTTATTGGTGAAGATGGCTGAGAAAATTGGTTTTGAAGTTGAGGTTTTGAGACCAGACCCTACGACAGAGTTAGCAAAGATATATCGGGCACTTAATGCAAGTGATGTCATGATTGGAGTTCATGGTGCTGCCATGACTCATTTTCTCTTCATGAAGCCTCACTCTGTTTTCATACAAGTTATTCCTCTTGGAACTGAATGGGCAGCAGAAGAGTACTATGGAGAACCTGCAAAGAAGCTTGGCTTAAAATACATTGGCTATCAAATTCTAGCAAGAGAGAGCTCTTTGTATGGCAAATATGATAGAGATGATCTTGTTCTTCGAGATCCACAGAGCGTAAACAAAAAGGGATGGGAATACACGAAGAAGATCTATCTTGATGGCCAAACTGTGAGATTAGACCTCGGGAGATTTCGGAAACGTTTGGTTCATGCTTATGATTATATGTTCAGTCGAATTAACCAGCGTCCCCATCTGAAATATTCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

538

Amino Acids

61.95

Weight (kDa)

6.01

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 350 - 432 4.4e-14 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1357
AccI GTMKAC 1 cut(s) 368
AciI CCGC 1 cut(s) 16
AclI AACGTT 1 cut(s) 1543
AclWI GGATC 4 cut(s) 403, 927, 1105, 1442
AcoI YGGCCR 1 cut(s) 1504
AcsI RAATTY 3 cut(s) 653, 852, 1386
AcuI CTGAAG 2 cut(s) 172, 420
AfaI GTAC 4 cut(s) 559, 572, 680, 1337
AfiI CCNNNNNNNGG 2 cut(s) 498, 499
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 6 cut(s) 222, 658, 700, 965, 1016, 1157
AhlI ACTAGT 1 cut(s) 506
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
Alw21I GWGCWC 2 cut(s) 867, 1406
Alw26I GTCTC 4 cut(s) 72, 753, 1008, 1165
AlwI GGATC 4 cut(s) 403, 927, 1105, 1442
Ama87I CYCGRG 1 cut(s) 1526
AoxI GGCC 3 cut(s) 834, 941, 1504
ApeKI GCWGC 4 cut(s) 162, 772, 1250, 1325
ApoI RAATTY 3 cut(s) 653, 852, 1386
ArsI GACNNNNNNTTYG 2 cut(s) 940, 972
AsiGI ACCGGT 1 cut(s) 635
AspLEI GCGC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 3 cut(s) 50, 173, 1141
AvaI CYCGRG 1 cut(s) 1526
AxyI CCTNAGG 1 cut(s) 831
BaeGI GKGCMC 1 cut(s) 1213
BalI TGGCCA 1 cut(s) 1506
BanII GRGCYC 2 cut(s) 867, 1406
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 2 cut(s) 867, 1406
BbvI GCAGC 4 cut(s) 174, 784, 1237, 1337
BccI CCATC 8 cut(s) 76, 449, 656, 880, 1129, 1467, 1496, 1602
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 4 cut(s) 72, 753, 1008, 1165
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 4 cut(s) 507, 563, 926, 1391
BfmI CTRYAG 2 cut(s) 792, 799
BfuAI ACCTGC 1 cut(s) 1357
BglII AGATCT 1 cut(s) 1491
BisI GCNGC 4 cut(s) 163, 773, 1251, 1326
BlsI GCNGC 4 cut(s) 164, 774, 1252, 1327
BmcAI AGTACT 2 cut(s) 559, 1337
Bme1390I CCNGG 1 cut(s) 493
BmeT110I CYCGRG 1 cut(s) 1526
BmrFI CCNGG 1 cut(s) 493
BmrI ACTGGG 2 cut(s) 358, 633
BmuI ACTGGG 2 cut(s) 358, 633
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 493
BsaI GGTCTC 1 cut(s) 1165
BsaJI CCNNGG 1 cut(s) 1525
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 498, 499
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 3 cut(s) 364, 628, 944
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 2 cut(s) 540, 820
BseDI CCNNGG 1 cut(s) 1525
BseGI GGATG 2 cut(s) 358, 1478
BseLI CCNNNNNNNGG 2 cut(s) 498, 499
BseMI GCAATG 2 cut(s) 540, 820
BseMII CTCAG 4 cut(s) 83, 822, 839, 1131
BseNI ACTGG 3 cut(s) 364, 628, 944
BseSI GKGCMC 1 cut(s) 1213
BseXI GCAGC 4 cut(s) 174, 784, 1237, 1337
BseYI CCCAGC 1 cut(s) 690
BshFI GGCC 3 cut(s) 836, 943, 1506
BshTI ACCGGT 1 cut(s) 635
BsiHKAI GWGCWC 2 cut(s) 867, 1406
BsiHKCI CYCGRG 1 cut(s) 1526
BsiSI CCGG 2 cut(s) 493, 636
BslFI GGGAC 1 cut(s) 1575
BslI CCNNNNNNNGG 2 cut(s) 498, 499
BsmAI GTCTC 4 cut(s) 72, 753, 1008, 1165
BsmFI GGGAC 1 cut(s) 1575
BsnI GGCC 3 cut(s) 836, 943, 1506
Bso31I GGTCTC 1 cut(s) 1165
BsoBI CYCGRG 1 cut(s) 1526
Bsp1286I GDGCHC 3 cut(s) 867, 1213, 1406
Bsp1407I TGTACA 1 cut(s) 678
BspACI CCGC 1 cut(s) 16
BspANI GGCC 3 cut(s) 836, 943, 1506
BspCNI CTCAG 4 cut(s) 82, 823, 840, 1132
BspHI TCATGA 6 cut(s) 342, 649, 747, 856, 1230, 1272
BspMI ACCTGC 1 cut(s) 1357
BspPI GGATC 4 cut(s) 403, 927, 1105, 1442
BspTNI GGTCTC 1 cut(s) 1165
BsrDI GCAATG 2 cut(s) 540, 820
BsrFI RCCGGY 1 cut(s) 635
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 3 cut(s) 364, 628, 944
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 1525
Bst4CI ACNGT 5 cut(s) 557, 582, 678, 1513, 1611
Bst6I CTCTTC 6 cut(s) 57, 146, 156, 191, 1274, 1326
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstAUI TGTACA 1 cut(s) 678
BstDEI CTNAG 4 cut(s) 69, 831, 848, 1140
BstF5I GGATG 2 cut(s) 358, 1478
BstHHI GCGC 1 cut(s) 9
BstMAI GTCTC 4 cut(s) 72, 753, 1008, 1165
BstMWI GCNNNNNNNGC 3 cut(s) 13, 1075, 1217
BstSCI CCNGG 1 cut(s) 491
BstSFI CTRYAG 2 cut(s) 792, 799
BstSLI GKGCMC 1 cut(s) 1213
BstV1I GCAGC 4 cut(s) 174, 784, 1237, 1337
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 4 cut(s) 395, 919, 1447, 1491
BstYI RGATCY 4 cut(s) 395, 919, 1447, 1491
Bsu36I CCTNAGG 1 cut(s) 831
BsuRI GGCC 3 cut(s) 836, 943, 1506
BtsCI GGATG 2 cut(s) 358, 1478
BtsIMutI CAGTG 5 cut(s) 32, 587, 674, 881, 1005
BveI ACCTGC 1 cut(s) 1357
CciI TCATGA 6 cut(s) 342, 649, 747, 856, 1230, 1272
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 635
CseI GACGC 1 cut(s) 1577
Csp6I GTAC 4 cut(s) 558, 571, 679, 1336
CspAI ACCGGT 1 cut(s) 635
CviQI GTAC 4 cut(s) 558, 571, 679, 1336
DdeI CTNAG 4 cut(s) 69, 831, 848, 1140
EaeI YGGCCR 1 cut(s) 1504
Eam1104I CTCTTC 6 cut(s) 57, 146, 156, 191, 1274, 1326
EarI CTCTTC 6 cut(s) 57, 146, 156, 191, 1274, 1326
Ecl136II GAGCTC 2 cut(s) 865, 1404
Eco24I GRGCYC 2 cut(s) 867, 1406
Eco31I GGTCTC 1 cut(s) 1165
Eco53kI GAGCTC 2 cut(s) 865, 1404
Eco57I CTGAAG 2 cut(s) 172, 420
Eco81I CCTNAGG 1 cut(s) 831
Eco88I CYCGRG 1 cut(s) 1526
EcoICRI GAGCTC 2 cut(s) 865, 1404
EcoRI GAATTC 2 cut(s) 653, 852
EcoT38I GRGCYC 2 cut(s) 867, 1406
FalI AAGNNNNNCTT 4 cut(s) 978, 1010, 1349, 1381
FaqI GGGAC 1 cut(s) 1575
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 4 cut(s) 163, 773, 1251, 1326
FokI GGATG 2 cut(s) 365, 1485
FriOI GRGCYC 2 cut(s) 867, 1406
Fsp4HI GCNGC 4 cut(s) 163, 773, 1251, 1326
FspBI CTAG 4 cut(s) 507, 563, 926, 1391
GlaI GCGC 1 cut(s) 8
GluI GCNGC 4 cut(s) 163, 773, 1251, 1326
GsaI CCCAGC 1 cut(s) 694
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 3 cut(s) 836, 943, 1506
HapII CCGG 2 cut(s) 493, 636
HgaI GACGC 1 cut(s) 1577
HhaI GCGC 1 cut(s) 9
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HindIII AAGCTT 3 cut(s) 125, 992, 1358
HinfI GANTC 5 cut(s) 65, 477, 667, 875, 1258
HpaII CCGG 2 cut(s) 493, 636
HphI GGTGA 3 cut(s) 50, 173, 1141
Hpy166II GTNNAC 2 cut(s) 369, 1462
Hpy8I GTNNAC 2 cut(s) 369, 1462
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 233, 700
HpyCH4III ACNGT 5 cut(s) 557, 582, 678, 1513, 1611
HpyCH4IV ACGT 2 cut(s) 74, 1543
HpyCH4V TGCA 5 cut(s) 162, 545, 1045, 1220, 1352
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 1075, 1217
HpyF3I CTNAG 4 cut(s) 69, 831, 848, 1140
HpySE526I ACGT 2 cut(s) 74, 1543
HspAI GCGC 1 cut(s) 7
LmnI GCTCC 5 cut(s) 197, 274, 296, 419, 1025
Lsp1109I GCAGC 4 cut(s) 174, 784, 1237, 1337
MaeI CTAG 4 cut(s) 507, 563, 926, 1391
MaeII ACGT 2 cut(s) 74, 1543
MflI RGATCY 4 cut(s) 395, 919, 1447, 1491
MhlI GDGCHC 3 cut(s) 867, 1213, 1406
MlsI TGGCCA 1 cut(s) 1506
MluCI AATT 9 cut(s) 530, 653, 736, 852, 948, 960, 1146, 1386, 1578
MluNI TGGCCA 1 cut(s) 1506
MlyI GAGTC 2 cut(s) 74, 1252
MmeI TCCRAC 2 cut(s) 490, 616
Mox20I TGGCCA 1 cut(s) 1506
MscI TGGCCA 1 cut(s) 1506
MseI TTAA 3 cut(s) 1215, 1367, 1581
MslI CAYNNNNRTG 1 cut(s) 1557
Msp20I TGGCCA 1 cut(s) 1506
MspA1I CMGCKG 2 cut(s) 16, 608
MspI CCGG 2 cut(s) 493, 636
MspR9I CCNGG 1 cut(s) 493
MwoI GCNNNNNNNGC 3 cut(s) 13, 1075, 1217
NciI CCSGG 1 cut(s) 493
PagI TCATGA 6 cut(s) 342, 649, 747, 856, 1230, 1272
PfeI GAWTC 3 cut(s) 477, 667, 875
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 4 cut(s) 164, 774, 1252, 1327
PleI GAGTC 2 cut(s) 73, 1252
PpsI GAGTC 2 cut(s) 73, 1252
Psp124BI GAGCTC 2 cut(s) 867, 1406
Psp1406I AACGTT 1 cut(s) 1543
PspFI CCCAGC 1 cut(s) 690
PsrI GAACNNNNNNTAC 2 cut(s) 352, 384
PsuI RGATCY 4 cut(s) 395, 919, 1447, 1491
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 4 cut(s) 559, 572, 680, 1337
RsaNI GTAC 4 cut(s) 558, 571, 679, 1336
RseI CAYNNNNRTG 1 cut(s) 1557
SacI GAGCTC 2 cut(s) 867, 1406
SaqAI TTAA 3 cut(s) 1215, 1367, 1581
SatI GCNGC 4 cut(s) 163, 773, 1251, 1326
ScaI AGTACT 2 cut(s) 559, 1337
SchI GAGTC 2 cut(s) 74, 1252
ScrFI CCNGG 1 cut(s) 493
SduI GDGCHC 3 cut(s) 867, 1213, 1406
SfcI CTRYAG 2 cut(s) 792, 799
SmiMI CAYNNNNRTG 1 cut(s) 1557
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 9 cut(s) 530, 653, 736, 852, 948, 960, 1146, 1386, 1578
SsiI CCGC 1 cut(s) 16
SspI AATATT 1 cut(s) 1604
SspMI CTAG 4 cut(s) 507, 563, 926, 1391
SstI GAGCTC 2 cut(s) 867, 1406
StyD4I CCNGG 1 cut(s) 491
TaaI ACNGT 5 cut(s) 557, 582, 678, 1513, 1611
TaiI ACGT 2 cut(s) 77, 1546
TaqI TCGA 5 cut(s) 380, 620, 946, 1444, 1576
TaqII GACCGA 1 cut(s) 945
TasI AATT 9 cut(s) 530, 653, 736, 852, 948, 960, 1146, 1386, 1578
TatI WGTACW 3 cut(s) 557, 678, 1335
TfiI GAWTC 3 cut(s) 477, 667, 875
Tru1I TTAA 3 cut(s) 1215, 1367, 1581
Tru9I TTAA 3 cut(s) 1215, 1367, 1581
TscAI CASTG 5 cut(s) 32, 587, 681, 888, 1005
TseI GCWGC 4 cut(s) 162, 772, 1250, 1325
TspRI CASTG 5 cut(s) 32, 587, 681, 888, 1005
XapI RAATTY 3 cut(s) 653, 852, 1386
XbaI TCTAGA 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 4 cut(s) 507, 563, 926, 1391
ZrmI AGTACT 2 cut(s) 559, 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.