RchiOBHm_Chr3g0483241

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002314
Physical Location & Seq
Reverse (-)
29451304 .. 29454279
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44799

Sequence Viewer

Length: 1563 bp
ATGGTATACCACCAGCGCAGGAAAGGCGAAAAGCCTACCGAGGATGAAGATGAGGAGGGTCAGAGTCTTGCAATGGAGTGTGCGAGCTCTGGTTACTACAAAAGATCAAGGCCCAAGCTTCTCACCTTTCTCTTCATCTCTCTTCTCTCTTGTGGCTTCATATTAGTCCCTCATCTGATATTTTCCTCTGTCACCACTTTCTCTCTTTCACAATCACCGCAAGTAGAAAACGAAGGCCCTATTACTGCTGCTGCTGTTATAGACCCAAAGGCTCCCTTCTATTCTTCAGTCAATAATGGAGCTATATGTTGTGATAGAAGCAGTATCCGTTCAGATGTTTGTACCATGAAAGGGGATGTAAGAACACACTCGCCTTCCTCTTCTATCTTCGTCTACGAATCGCAAGACGAAGCAGTGAAGAATGAGGAGGATCTCCAACACGAAAAGATCAGACCATACACCAGAAAATGGGAAACAAATATTATGGACACCATTGATGAGTTGGATCTCATTGCAAAGAAAAACACTCTGATCATGAACCATCATAAATGTGATGTCCAACATGATGTTCCAGCAGTGTTTTTCTCAACCGGGGGCTACACCGGCAACGTCTACCATGAATTTAATGATGGGATAATGCCACTGTACATTACTTCCCAACATTTCAACAAGAAGGTTGTGTTCGTCATTCTTGAATTTCACAATTGGTGGGTCATGAAATATTCAGACATTCTTTCCCATCTCTCAGATTATCCCTTAATAGATTTCCGTACTGATAAGAGAGTTCATTGCTTCCCTGAAGCCATTGTCGGTTTGAAAATTCACGATGAGCTGACTGTGGATTCTTCATTGATGGAAAGGAATGCGAGCATAGTCGAGTTTCGAAATCTCCTAGACAGAGCTTACCGGCCTCAGATCAGAAGTCTAATGTATGAACATGCAAAGCTTTCTGTTGTTCCCAAGTTGAAAAAACCATCAAGAATCAGGAGAAAAGTGCAAGAGCATCCATTTAATAAGCCGAAGTTGGTTATTATATCTCGAAATGGATCAAGGGCAATAACAAATGAGAATTTTCTGGTGAAAATGGCTGAGAAAGTCGGGTTTCAAGTCCAAGTTTTGAGGCCAGATAGCCGGACAATGTTAGCAGAGATTTATTGGGCTCTAAATTCGAGTGACGTCATGATTGGGGTTCATGGGGCTGCCATGACACATTTTCTGTTCATGAAGCCTGGTTCTGTGTTCATTCAAATCATTCCTCTCGGAACTGAATGGGCAGCAGAGGCATATTATGGAGAACCTGCAAAGAAGCTTGGGTTGAAGTACATTGGATACCAAATCCTTACGAAAGAGAGCTCATTATATGACAAGTATGATAAGGATGATCCTGTTCTTAAAGATCCAAGGAGTGTAACCAGAAAGGGATGGCAATACACAAAGATGATCTATCTTGAGGATCAGACAGTAAGACTACACCTCCCAAGATTTCGGAAGCAGTTGGTTGGCGCTTTTGATTACACCATTGATAGATTGAATCAGCAGGGTCCTAATATTCAGTCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

520

Amino Acids

59.87

Weight (kDa)

8.44

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 318 - 415 1.2e-14 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1179
Acc36I ACCTGC 1 cut(s) 1306
AccB7I CCANNNNNTGG 1 cut(s) 468
AccI GTMKAC 3 cut(s) 6, 393, 612
AciI CCGC 1 cut(s) 218
AclWI GGATC 6 cut(s) 438, 513, 1054, 1376, 1391, 1461
AcsI RAATTY 5 cut(s) 620, 695, 819, 1069, 1165
AcuI CTGAAG 2 cut(s) 270, 819
AcyI GRCGYC 1 cut(s) 1176
AfaI GTAC 4 cut(s) 343, 647, 772, 1322
AfiI CCNNNNNNNGG 2 cut(s) 351, 468
AgsI TTSAA 8 cut(s) 667, 695, 817, 967, 1106, 1247, 1318, 1531
AjnI CCWGG 1 cut(s) 1228
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 8 cut(s) 87, 118, 302, 832, 902, 946, 1309, 1353
AluI AGCT 8 cut(s) 87, 118, 302, 832, 902, 946, 1309, 1353
Alw21I GWGCWC 2 cut(s) 89, 1355
AlwI GGATC 6 cut(s) 438, 513, 1054, 1376, 1391, 1461
AoxI GGCC 4 cut(s) 110, 235, 908, 1121
ApeKI GCWGC 4 cut(s) 248, 251, 1199, 1274
ApoI RAATTY 5 cut(s) 620, 695, 819, 1069, 1165
AspLEI GCGC 2 cut(s) 18, 1505
AspS9I GGNCC 3 cut(s) 111, 236, 1541
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 4 cut(s) 115, 184, 207, 1090
AsuII TTCGAA 1 cut(s) 883
AvaII GGWCC 1 cut(s) 1541
BanII GRGCYC 3 cut(s) 89, 1162, 1355
Bbv12I GWGCWC 2 cut(s) 89, 1355
BbvI GCAGC 4 cut(s) 235, 238, 1186, 1286
BccI CCATC 6 cut(s) 549, 623, 747, 847, 982, 1416
BciT130I CCWGG 1 cut(s) 1230
BciVI GTATCC 2 cut(s) 335, 1322
BclI TGATCA 1 cut(s) 531
BcnI CCSGG 1 cut(s) 592
BfaI CTAG 1 cut(s) 893
BfoI RGCGCY 1 cut(s) 1506
BfuAI ACCTGC 1 cut(s) 1306
BfuI GTATCC 2 cut(s) 335, 1322
BisI GCNGC 4 cut(s) 249, 252, 1200, 1275
BlsI GCNGC 4 cut(s) 250, 253, 1201, 1276
Bme1390I CCNGG 2 cut(s) 592, 1230
Bme18I GGWCC 1 cut(s) 1541
BmgT120I GGNCC 3 cut(s) 111, 236, 1541
BmiI GGNNCC 2 cut(s) 273, 1542
BmrFI CCNGG 2 cut(s) 592, 1230
BmsI GCATC 1 cut(s) 1012
Bpu14I TTCGAA 1 cut(s) 883
BpuEI CTTGAG 1 cut(s) 1469
BpuMI CCSGG 1 cut(s) 592
BsaHI GRCGYC 1 cut(s) 1176
BsaJI CCNNGG 3 cut(s) 39, 591, 1400
BsaXI ACNNNNNCTCC 2 cut(s) 1458, 1488
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 468
Bse118I RCCGGY 2 cut(s) 602, 906
Bse3DI GCAATG 3 cut(s) 78, 510, 787
BseBI CCWGG 1 cut(s) 1230
BseDI CCNNGG 3 cut(s) 39, 591, 1400
BseGI GGATG 5 cut(s) 49, 361, 1003, 1384, 1427
BseLI CCNNNNNNNGG 2 cut(s) 351, 468
BseMI GCAATG 3 cut(s) 78, 510, 787
BseMII CTCAG 3 cut(s) 759, 926, 1080
BseRI GAGGAG 2 cut(s) 68, 440
BseXI GCAGC 4 cut(s) 235, 238, 1186, 1286
BshFI GGCC 4 cut(s) 112, 237, 910, 1123
BsiHKAI GWGCWC 2 cut(s) 89, 1355
BsiSI CCGG 4 cut(s) 591, 603, 907, 1132
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 351, 468
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 4 cut(s) 112, 237, 910, 1123
Bsp119I TTCGAA 1 cut(s) 883
Bsp1286I GDGCHC 3 cut(s) 89, 1162, 1355
Bsp1407I TGTACA 1 cut(s) 645
BspACI CCGC 1 cut(s) 218
BspANI GGCC 4 cut(s) 112, 237, 910, 1123
BspCNI CTCAG 3 cut(s) 758, 925, 1081
BspHI TCATGA 4 cut(s) 534, 714, 1179, 1221
BspLI GGNNCC 2 cut(s) 273, 1542
BspMI ACCTGC 1 cut(s) 1306
BspPI GGATC 6 cut(s) 438, 513, 1054, 1376, 1391, 1461
BspT104I TTCGAA 1 cut(s) 883
BsrDI GCAATG 3 cut(s) 78, 510, 787
BsrFI RCCGGY 2 cut(s) 602, 906
BsrGI TGTACA 1 cut(s) 645
BssAI RCCGGY 2 cut(s) 602, 906
BssECI CCNNGG 3 cut(s) 39, 591, 1400
BssNAI GTATAC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 1176
BssT1I CCWWGG 1 cut(s) 1400
Bst1107I GTATAC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 1230
Bst4CI ACNGT 3 cut(s) 645, 838, 1462
Bst6I CTCTTC 3 cut(s) 137, 147, 385
BstACI GRCGYC 1 cut(s) 1176
BstAUI TGTACA 1 cut(s) 645
BstBI TTCGAA 1 cut(s) 883
BstC8I GCNNGC 2 cut(s) 85, 868
BstDEI CTNAG 3 cut(s) 745, 912, 1089
BstF5I GGATG 5 cut(s) 49, 361, 1003, 1384, 1427
BstH2I RGCGCY 1 cut(s) 1506
BstHHI GCGC 2 cut(s) 18, 1505
BstMWI GCNNNNNNNGC 3 cut(s) 24, 603, 1280
BstNI CCWGG 1 cut(s) 1230
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 2 cut(s) 590, 1228
BstV1I GCAGC 4 cut(s) 235, 238, 1186, 1286
BstX2I RGATCY 3 cut(s) 430, 505, 1396
BstYI RGATCY 3 cut(s) 430, 505, 1396
BstZ17I GTATAC 1 cut(s) 7
BsuI GTATCC 2 cut(s) 335, 1322
BsuRI GGCC 4 cut(s) 112, 237, 910, 1123
BtsCI GGATG 5 cut(s) 49, 361, 1003, 1384, 1427
BtsI GCAGTG 2 cut(s) 420, 582
BtsIMutI CAGTG 3 cut(s) 420, 582, 641
BveI ACCTGC 1 cut(s) 1306
Cac8I GCNNGC 2 cut(s) 85, 868
CciI TCATGA 4 cut(s) 534, 714, 1179, 1221
CfoI GCGC 2 cut(s) 18, 1505
Cfr10I RCCGGY 2 cut(s) 602, 906
Cfr13I GGNCC 3 cut(s) 111, 236, 1541
Csp6I GTAC 4 cut(s) 342, 646, 771, 1321
CviQI GTAC 4 cut(s) 342, 646, 771, 1321
DdeI CTNAG 3 cut(s) 745, 912, 1089
Eam1104I CTCTTC 3 cut(s) 137, 147, 385
EarI CTCTTC 3 cut(s) 137, 147, 385
Ecl136II GAGCTC 2 cut(s) 87, 1353
Eco130I CCWWGG 1 cut(s) 1400
Eco24I GRGCYC 3 cut(s) 89, 1162, 1355
Eco47I GGWCC 1 cut(s) 1541
Eco53kI GAGCTC 2 cut(s) 87, 1353
Eco57I CTGAAG 2 cut(s) 270, 819
EcoICRI GAGCTC 2 cut(s) 87, 1353
EcoO109I RGGNCCY 2 cut(s) 236, 1541
EcoRII CCWGG 1 cut(s) 1228
EcoT14I CCWWGG 1 cut(s) 1400
EcoT38I GRGCYC 3 cut(s) 89, 1162, 1355
ErhI CCWWGG 1 cut(s) 1400
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 531
FblI GTMKAC 3 cut(s) 6, 393, 612
Fnu4HI GCNGC 4 cut(s) 249, 252, 1200, 1275
FokI GGATG 5 cut(s) 56, 368, 990, 1391, 1434
FriOI GRGCYC 3 cut(s) 89, 1162, 1355
Fsp4HI GCNGC 4 cut(s) 249, 252, 1200, 1275
FspBI CTAG 1 cut(s) 893
GlaI GCGC 2 cut(s) 17, 1504
GluI GCNGC 4 cut(s) 249, 252, 1200, 1275
HaeII RGCGCY 1 cut(s) 1506
HaeIII GGCC 4 cut(s) 112, 237, 910, 1123
HapII CCGG 4 cut(s) 591, 603, 907, 1132
HhaI GCGC 2 cut(s) 18, 1505
Hin1I GRCGYC 1 cut(s) 1176
Hin6I GCGC 2 cut(s) 16, 1503
HinP1I GCGC 2 cut(s) 16, 1503
HindIII AAGCTT 3 cut(s) 116, 944, 1307
HinfI GANTC 5 cut(s) 64, 398, 842, 981, 1531
HpaII CCGG 4 cut(s) 591, 603, 907, 1132
HphI GGTGA 4 cut(s) 115, 184, 207, 1090
Hpy166II GTNNAC 3 cut(s) 7, 394, 613
Hpy8I GTNNAC 3 cut(s) 7, 394, 613
HpyAV CCTTC 4 cut(s) 227, 286, 384, 667
HpyCH4III ACNGT 3 cut(s) 645, 838, 1462
HpyCH4IV ACGT 2 cut(s) 609, 1176
HpyCH4V TGCA 5 cut(s) 71, 515, 941, 997, 1301
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 603, 1280
HpyF3I CTNAG 3 cut(s) 745, 912, 1089
HpySE526I ACGT 2 cut(s) 609, 1176
Hsp92I GRCGYC 1 cut(s) 1176
HspAI GCGC 2 cut(s) 16, 1503
Ksp22I TGATCA 1 cut(s) 531
LmnI GCTCC 2 cut(s) 277, 299
Lsp1109I GCAGC 4 cut(s) 235, 238, 1186, 1286
LweI GCATC 1 cut(s) 1012
MaeI CTAG 1 cut(s) 893
MaeII ACGT 2 cut(s) 609, 1176
MaeIII GTNAC 5 cut(s) 92, 190, 1172, 1408, 1554
MboII GAAGA 8 cut(s) 59, 124, 134, 276, 372, 379, 430, 837
MfeI CAATTG 1 cut(s) 703
MflI RGATCY 3 cut(s) 430, 505, 1396
MhlI GDGCHC 3 cut(s) 89, 1162, 1355
MluCI AATT 6 cut(s) 620, 695, 703, 819, 1069, 1165
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 3 cut(s) 460, 483, 583
MseI TTAA 4 cut(s) 624, 758, 1011, 1392
MslI CAYNNNNRTG 2 cut(s) 549, 1436
MspI CCGG 4 cut(s) 591, 603, 907, 1132
MspR9I CCNGG 2 cut(s) 592, 1230
MunI CAATTG 1 cut(s) 703
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 1 cut(s) 1230
MwoI GCNNNNNNNGC 3 cut(s) 24, 603, 1280
NciI CCSGG 1 cut(s) 592
NlaIV GGNNCC 2 cut(s) 273, 1542
NmuCI GTSAC 3 cut(s) 190, 1172, 1554
NspI RCATGY 1 cut(s) 941
NspV TTCGAA 1 cut(s) 883
PagI TCATGA 4 cut(s) 534, 714, 1179, 1221
PctI GAATGC 1 cut(s) 868
PfeI GAWTC 4 cut(s) 398, 842, 981, 1531
PflMI CCANNNNNTGG 1 cut(s) 468
PkrI GCNGC 4 cut(s) 250, 253, 1201, 1276
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PpuMI RGGWCCY 1 cut(s) 1541
Psp124BI GAGCTC 2 cut(s) 89, 1355
Psp5II RGGWCCY 1 cut(s) 1541
Psp6I CCWGG 1 cut(s) 1228
PspGI CCWGG 1 cut(s) 1228
PspN4I GGNNCC 2 cut(s) 273, 1542
PspPI GGNCC 3 cut(s) 111, 236, 1541
PspPPI RGGWCCY 1 cut(s) 1541
PsuI RGATCY 3 cut(s) 430, 505, 1396
RsaI GTAC 4 cut(s) 343, 647, 772, 1322
RsaNI GTAC 4 cut(s) 342, 646, 771, 1321
RseI CAYNNNNRTG 2 cut(s) 549, 1436
SacI GAGCTC 2 cut(s) 89, 1355
SaqAI TTAA 4 cut(s) 624, 758, 1011, 1392
SatI GCNGC 4 cut(s) 249, 252, 1200, 1275
Sau96I GGNCC 3 cut(s) 111, 236, 1541
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 592, 1230
SduI GDGCHC 3 cut(s) 89, 1162, 1355
SfaNI GCATC 1 cut(s) 1012
SfuI TTCGAA 1 cut(s) 883
SinI GGWCC 1 cut(s) 1541
SmiMI CAYNNNNRTG 2 cut(s) 549, 1436
SmlI CTYRAG 1 cut(s) 1448
SmoI CTYRAG 1 cut(s) 1448
Sse9I AATT 6 cut(s) 620, 695, 703, 819, 1069, 1165
SsiI CCGC 1 cut(s) 218
SspI AATATT 3 cut(s) 481, 722, 1549
SspMI CTAG 1 cut(s) 893
SstI GAGCTC 2 cut(s) 89, 1355
StyD4I CCNGG 2 cut(s) 590, 1228
StyI CCWWGG 1 cut(s) 1400
TaaI ACNGT 3 cut(s) 645, 838, 1462
TaiI ACGT 2 cut(s) 612, 1179
TaqI TCGA 4 cut(s) 876, 883, 1039, 1169
TasI AATT 6 cut(s) 620, 695, 703, 819, 1069, 1165
TatI WGTACW 2 cut(s) 645, 1320
TfiI GAWTC 4 cut(s) 398, 842, 981, 1531
Tru1I TTAA 4 cut(s) 624, 758, 1011, 1392
Tru9I TTAA 4 cut(s) 624, 758, 1011, 1392
TscAI CASTG 3 cut(s) 420, 582, 648
TseFI GTSAC 3 cut(s) 190, 1172, 1554
TseI GCWGC 4 cut(s) 248, 251, 1199, 1274
Tsp45I GTSAC 3 cut(s) 190, 1172, 1554
TspGWI ACGGA 2 cut(s) 317, 758
TspRI CASTG 3 cut(s) 420, 582, 648
Van91I CCANNNNNTGG 1 cut(s) 468
VpaK11BI GGWCC 1 cut(s) 1541
XapI RAATTY 5 cut(s) 620, 695, 819, 1069, 1165
XceI RCATGY 1 cut(s) 941
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XmiI GTMKAC 3 cut(s) 6, 393, 612
XspI CTAG 1 cut(s) 893
ZraI GACGTC 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.