Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002314

Physical Location & Seq

Genomic Coordinates Forward (+)

6722620 .. 6723585

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACCCAGTTGTATGGCTTCACCCAAATACTCAAGCTTTTAGTTGCAGGAACTATATTTTGTGACAGGAGCAGTTTTCGATCAGATGTTTGTATCCTGAAAGGGGATGTAAGAACACACTCCGGTTCCTCTTCCATCTTTGTCTACAGATCCAGAGATAAAAGTAATTTCACAAACTATCTATCGAGCATCGTCGAGGAAAACGAAGAGGAAAATGGGGAACAGCTTCACCGCGAAAAGATTAAACCGTATACCCGGAAATGGGAACCAAGTACCATGGACACCGTCACAGAATTAGGTCTCATTGCAAAGACAGATGGCACTCCAGGAAAGCAACATGAGTGTGATGTCCAACATGAGGTTCCGGCCGTATTCTTCTCAACGGCGGGCTATACCGGTAATGTTTATCATGAATTCAACGATGGTATTATGCCGTTGTACATTACTTCTCGGCATTTGAGGAAACAGGTTGTGTTTGTCATCGTTGATTTTCACAATTGGTGGCTTATGAAATATGGAGACATTCTTTCACAACTGACAGACCATCCAGTAATTGATTTCAGTGCAGACAAGAGAACTCATTGCTTTCCTGAAGCTACTGTCGGTCTGCAAATTCACGACGAGCTCACTGTGGATTCTTCAAATATGGAAGGAAATAAGAGCATATTCGACTTTCGAAATCTTCTGGACGGGGCTTACAGGCCTCGAGTTACAAGTCTGATTCACGAACGAGAAGCAAAAAAGAAACTCTCCGTTTCTCCGTCTCCCGCCGCATCAAAAAGACCCTTAAAAATCAAGAGAAAAGTACATGAAGCACAACAACTCAAGAGGCCTAGACTAGTGATCGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

285

Amino Acids

32.55

Weight (kDa)

8.25

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41640 AT2G41640 AT2G41640 AT3G57380 AT3G57380 AT3G57380
fragaria_vesca	FvH4_6g23970 FvH4_6g24320
malus_domestica	MD00G1122300.v1.1 MD12G1075400.v1.1 MD12G1075900.v1.1 MD12G1211600.v1.1 MD14G1073900.v1.1 MD14G1074300.v1.1
prunus_persica	Prupe.7G055600_v2.0.a1 Prupe.7G055700_v2.0.a1
pyrus_communis	pycom12g06490 pycom12g06530 pycom14g06320
rosa_chinensis	RchiOBHm_Chr3g0483201 RchiOBHm_Chr3g0483241
rosa_laevigata	RLG00000023295 RLG00000023297 RLG00000023299
rosa_multiflora	Rmu_sc0000058.1_g000002 Rmu_sc0004790.1_g000011 Rmu_sc0007550.1_g000006 Rmu_sc0011066.1_g000001 Rmu_sc0026377.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398530 Rroxscaffold_6G00398550
rosa_rugosa	Rorug03G0204900 Rorug03G0204900
rosa_samantha	Rh3AG253100 Rh3AG253300 Rh3BG290300 Rh3CG287100 Rh3CG287200 Rh3DG282700 Rh3DG282900
rosa_wichuraiana	Rw3G022900 Rw3G022910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	144, 251
AccII	CGCG	1 cut(s)	234
AciI	CCGC	4 cut(s)	232, 386, 768, 771
AclWI	GGATC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	413, 612
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	3 cut(s)	274, 440, 807
AfiI	CCNNNNNNNGG	4 cut(s)	103, 261, 262, 358
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	418, 642
AhlI	ACTAGT	1 cut(s)	838
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	4 cut(s)	37, 226, 596, 625
AluI	AGCT	4 cut(s)	37, 226, 596, 625
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	3 cut(s)	305, 513, 768
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	705
AoxI	GGCC	3 cut(s)	366, 701, 830
ApoI	RAATTY	2 cut(s)	413, 612
AsiGI	ACCGGT	1 cut(s)	395
Asp700I	GAANNNNTTC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	13, 221
AsuII	TTCGAA	1 cut(s)	676
AvaI	CYCGRG	1 cut(s)	705
BanII	GRGCYC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	627
BccI	CCATC	4 cut(s)	143, 311, 416, 552
BceAI	ACGGC	3 cut(s)	353, 399, 418
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	305, 513, 768
BcuI	ACTAGT	1 cut(s)	838
BfaI	CTAG	3 cut(s)	834, 839, 853
BfmI	CTRYAG	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	771
BlsI	GCNGC	1 cut(s)	772
Bme1390I	CCNGG	2 cut(s)	256, 327
BmeT110I	CYCGRG	1 cut(s)	705
BmiI	GGNNCC	3 cut(s)	127, 267, 363
BmrFI	CCNGG	2 cut(s)	256, 327
BmsI	GCATC	2 cut(s)	198, 782
BpmI	CTGGAG	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	676
BpuEI	CTTGAG	2 cut(s)	17, 809
BpuMI	CCSGG	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	846
BsaBI	GATNNNNATC	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	2 cut(s)	122, 395
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 261, 262, 358
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	7, 548
Bse3DI	GCAATG	2 cut(s)	303, 580
Bse8I	GATNNNNATC	1 cut(s)	848
BseBI	CCWGG	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	846
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	112, 544
BseJI	GATNNNNATC	1 cut(s)	848
BseLI	CCNNNNNNNGG	4 cut(s)	103, 261, 262, 358
BseMI	GCAATG	2 cut(s)	303, 580
BseNI	ACTGG	2 cut(s)	7, 548
BseX3I	CGGCCG	1 cut(s)	366
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	368, 703, 832
BshTI	ACCGGT	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	846
BsiEI	CGRYCG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	627
BsiHKCI	CYCGRG	1 cut(s)	705
BsiSI	CCGG	4 cut(s)	123, 256, 365, 396
BslI	CCNNNNNNNGG	4 cut(s)	103, 261, 262, 358
BsmAI	GTCTC	3 cut(s)	305, 513, 768
BsmBI	CGTCTC	1 cut(s)	768
BsnI	GGCC	3 cut(s)	368, 703, 832
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	705
Bsp119I	TTCGAA	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	80, 149, 843
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	4 cut(s)	232, 386, 768, 771
BspANI	GGCC	3 cut(s)	368, 703, 832
BspDI	ATCGAT	1 cut(s)	846
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	127, 267, 363
BspPI	GGATC	1 cut(s)	144
BspT104I	TTCGAA	1 cut(s)	676
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	303, 580
BsrFI	RCCGGY	1 cut(s)	395
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	7, 548
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	80, 149, 843
BssNAI	GTATAC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	276
Bst1107I	GTATAC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	4 cut(s)	249, 286, 601, 631
Bst6I	CTCTTC	2 cut(s)	136, 201
BstAUI	TGTACA	1 cut(s)	438
BstBI	TTCGAA	1 cut(s)	676
BstC8I	GCNNGC	1 cut(s)	388
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	112, 544
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	3 cut(s)	83, 152, 846
BstMAI	GTCTC	3 cut(s)	305, 513, 768
BstMBI	GATC	3 cut(s)	80, 149, 843
BstMCI	CGRYCG	1 cut(s)	369
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	254, 325
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	149
BstZ17I	GTATAC	1 cut(s)	252
BstZI	CGGCCG	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	846
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	3 cut(s)	368, 703, 832
BsuTUI	ATCGAT	1 cut(s)	846
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	112, 544
BtsIMutI	CAGTG	2 cut(s)	568, 627
Cac8I	GCNNGC	1 cut(s)	388
CciI	TCATGA	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	395
ClaI	ATCGAT	1 cut(s)	846
Csp6I	GTAC	3 cut(s)	273, 439, 806
CspAI	ACCGGT	1 cut(s)	395
CviAII	CATG	5 cut(s)	277, 338, 356, 410, 809
CviQI	GTAC	3 cut(s)	273, 439, 806
DpnI	GATC	3 cut(s)	82, 151, 845
DpnII	GATC	3 cut(s)	80, 149, 843
EaeI	YGGCCR	1 cut(s)	366
EagI	CGGCCG	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	136, 201
EarI	CTCTTC	2 cut(s)	136, 201
Ecl136II	GAGCTC	1 cut(s)	625
EclXI	CGGCCG	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	2 cut(s)	703, 832
Eco24I	GRGCYC	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	305
Eco32I	GATATC	1 cut(s)	850
Eco52I	CGGCCG	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	705
EcoICRI	GAGCTC	1 cut(s)	625
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	768
FaeI	CATG	5 cut(s)	280, 341, 359, 413, 812
FatI	CATG	5 cut(s)	276, 337, 355, 409, 808
FauI	CCCGC	2 cut(s)	379, 775
FblI	GTMKAC	2 cut(s)	144, 251
Fnu4HI	GCNGC	1 cut(s)	771
FokI	GGATG	2 cut(s)	119, 531
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	1 cut(s)	771
FspBI	CTAG	3 cut(s)	834, 839, 853
GluI	GCNGC	1 cut(s)	771
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	368, 703, 832
HapII	CCGG	4 cut(s)	123, 256, 365, 396
Hin1II	CATG	5 cut(s)	280, 341, 359, 413, 812
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	2 cut(s)	635, 721
HpaII	CCGG	4 cut(s)	123, 256, 365, 396
HphI	GGTGA	2 cut(s)	13, 221
Hpy166II	GTNNAC	2 cut(s)	145, 252
Hpy188I	TCNGA	2 cut(s)	85, 720
Hpy188III	TCNNGA	9 cut(s)	97, 153, 410, 590, 617, 686, 725, 796, 826
Hpy8I	GTNNAC	2 cut(s)	145, 252
Hpy99I	CGWCG	2 cut(s)	197, 623
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	4 cut(s)	249, 286, 601, 631
HpyCH4V	TGCA	4 cut(s)	47, 308, 566, 610
Hsp92II	CATG	5 cut(s)	280, 341, 359, 413, 812
Kzo9I	GATC	3 cut(s)	80, 149, 843
LmnI	GCTCC	1 cut(s)	69
LweI	GCATC	2 cut(s)	198, 782
MaeI	CTAG	3 cut(s)	834, 839, 853
MaeIII	GTNAC	3 cut(s)	62, 286, 709
MalI	GATC	3 cut(s)	82, 151, 845
MboI	GATC	3 cut(s)	80, 149, 843
MboII	GAAGA	5 cut(s)	123, 218, 367, 630, 674
MfeI	CAATTG	1 cut(s)	496
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	6 cut(s)	166, 293, 413, 496, 552, 612
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	7 cut(s)	139, 190, 202, 352, 453, 714, 822
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	2 cut(s)	243, 788
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	4 cut(s)	123, 256, 365, 396
MspR9I	CCNGG	2 cut(s)	256, 327
MunI	CAATTG	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	234
NciI	CCSGG	1 cut(s)	256
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	3 cut(s)	80, 149, 843
NlaIII	CATG	5 cut(s)	280, 341, 359, 413, 812
NlaIV	GGNNCC	3 cut(s)	127, 267, 363
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	2 cut(s)	62, 286
NspV	TTCGAA	1 cut(s)	676
PaeR7I	CTCGAG	1 cut(s)	705
PagI	TCATGA	1 cut(s)	409
PceI	AGGCCT	2 cut(s)	703, 832
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	635, 721
PflFI	GACNNNGTC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	772
Psp124BI	GAGCTC	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	127, 267, 363
PspXI	VCTCGAGB	1 cut(s)	705
PsuI	RGATCY	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	3 cut(s)	274, 440, 807
RsaNI	GTAC	3 cut(s)	273, 439, 806
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	243, 788
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	3 cut(s)	80, 149, 843
ScrFI	CCNGG	2 cut(s)	256, 327
SduI	GDGCHC	1 cut(s)	627
SetI	ASST	7 cut(s)	39, 228, 301, 363, 471, 598, 627
SfaNI	GCATC	2 cut(s)	198, 782
SfcI	CTRYAG	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	705
SfuI	TTCGAA	1 cut(s)	676
SlaI	CTCGAG	1 cut(s)	705
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	3 cut(s)	32, 705, 824
SmoI	CTYRAG	3 cut(s)	32, 705, 824
SpeI	ACTAGT	1 cut(s)	838
Sse9I	AATT	6 cut(s)	166, 293, 413, 496, 552, 612
SseBI	AGGCCT	2 cut(s)	703, 832
SsiI	CCGC	4 cut(s)	232, 386, 768, 771
SspMI	CTAG	3 cut(s)	834, 839, 853
SstI	GAGCTC	1 cut(s)	627
StuI	AGGCCT	2 cut(s)	703, 832
StyD4I	CCNGG	2 cut(s)	254, 325
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	4 cut(s)	249, 286, 601, 631
TaqI	TCGA	7 cut(s)	79, 185, 195, 669, 676, 706, 846
TaqII	GACCGA	1 cut(s)	593
TasI	AATT	6 cut(s)	166, 293, 413, 496, 552, 612
TatI	WGTACW	2 cut(s)	438, 805
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	2 cut(s)	635, 721
Tru1I	TTAA	2 cut(s)	243, 788
Tru9I	TTAA	2 cut(s)	243, 788
TscAI	CASTG	2 cut(s)	568, 634
TseFI	GTSAC	2 cut(s)	62, 286
Tsp45I	GTSAC	2 cut(s)	62, 286
TspDTI	ATGAA	3 cut(s)	426, 524, 825
TspGWI	ACGGA	2 cut(s)	742, 750
TspRI	CASTG	2 cut(s)	568, 634
Tth111I	GACNNNGTC	1 cut(s)	284
XapI	RAATTY	2 cut(s)	413, 612
XhoI	CTCGAG	1 cut(s)	705
XmiI	GTMKAC	2 cut(s)	144, 251
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	3 cut(s)	834, 839, 853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.