Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003875

Physical Location & Seq

Genomic Coordinates Reverse (-)

17795817 .. 17797413

Gene Structure 1597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTGGAGAGGAGTTGTTGAAACTGTTCGAGCAAAACTGGTCAGAGAGGCCAATCTTCAAGAAAGACAAAGAGAATCTGAATGGAAAAAGTAGAGAGAAGCGTGGAGAAAAAGAGATTCTAGAGGAACGACGAGAAGAAGAAGCACTGAAGAATTTTCCGGTGAGCTTTCTTGTAGAGAGGGCTATGAGTGACGAGACGATGATGACGACGAGTTCCAAGACAAGTTTGTTTAGTTCTTCATCAGATGATTTGTTCTTGTCTCCTAGATCGGTCTTACCCGTTAAACCAACGCCGATGAAGCTTCAGACGATCCTCTCCGGAAAAGAAGTCAACGCGTTCACGATTGCGGAAAGAGAGAGACTACTTTCAGAGAAGGAAGAGCAGAGGAAGAAGAAGAAGAAGAAGAGTAATGTGAGAACAAGAAAGGGAAAGAGTATGTCGGATTTGGAGTACGAGGAGCTTAAAGGGTTTATGGATCTAGGTTTTGTCTTTTCCGAGGATGACCATAAAGACTCCGATCTAGTTTCGATTCTTCCTGGGTTACAGAGATTGGTGAAGAAAGATGATGGAGTAACAAAAGAAGAAGAAGAAGAAGAAGAAGAAGACAAAATCGGTGGAAACAGAGCAGCGAGACCGTATTTGTCGGAAGCGTGGGATCATTGTGGAGGAAGAAAAGGAAAAAAACAAATCACGCCGGAGATTAAGTGGAGAGTTCCGGCGCCGGCGGCGGCTAGCGAAGTTGACTTAAAAGATAATCTAAGGCTTTGGGCTCATGCTGTGGCCTCGACTATTCGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

267

Amino Acids

30.58

Weight (kDa)

6.43

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42760
fragaria_vesca	FvH4_3g07380 FvH4_5g20610 FvH4_6g27710
malus_domestica	MD05G1027400.v1.1 MD05G1296400.v1.1 MD08G1224000.v1.1 MD10G1276400.v1.1
prunus_persica	Prupe.3G113400_v2.0.a1 Prupe.4G066000_v2.0.a1
pyrus_communis	pycom05g27480 pycom09g15340 pycom10g23080
rosa_chinensis	RchiOBHm_Chr2g0130861 RchiOBHm_Chr5g0011511
rosa_laevigata	RLG00000019155 RLG00000031842
rosa_multiflora	Rmu_sc0003629.1_g000018 Rmu_sc0009001.1_g000007 Rmu_sc0009975.1_g000027 Rmu_sc0009975.1_g000028
rosa_roxburghii	Rroxscaffold_1G00064940 Rroxscaffold_2G00113480
rosa_rugosa	Rorug02G0293800 Rorug04G0457500
rosa_samantha	Rh2AG345100 Rh2CG332000 Rh2DG371400 Rh5AG089300 Rh5BG084600 Rh5CG098300 Rh5DG084600
rosa_wichuraiana	Rw2G027450 Rw5G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	721
AccII	CGCG	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	3 cut(s)	350, 728, 731
AclWI	GGATC	3 cut(s)	307, 486, 666
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	2 cut(s)	170, 290
AcyI	GRCGYC	1 cut(s)	722
AfaI	GTAC	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	22, 61
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	3 cut(s)	168, 304, 463
AluI	AGCT	3 cut(s)	168, 304, 463
Alw26I	GTCTC	4 cut(s)	191, 267, 355, 628
AlwI	GGATC	3 cut(s)	307, 486, 666
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	2 cut(s)	50, 783
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	724
AsuHPI	GGTGA	2 cut(s)	175, 568
AsuII	TTCGAA	1 cut(s)	796
AsuNHI	GCTAGC	1 cut(s)	734
BanI	GGYRCC	1 cut(s)	721
BanII	GRGCYC	1 cut(s)	775
BbsI	GAAGAC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	641
BccI	CCATC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	4 cut(s)	191, 267, 355, 628
BfaI	CTAG	5 cut(s)	122, 267, 482, 524, 735
BfoI	RGCGCY	1 cut(s)	725
BisI	GCNGC	3 cut(s)	630, 729, 732
BlsI	GCNGC	3 cut(s)	631, 730, 733
Bme1390I	CCNGG	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	723
BmrFI	CCNGG	1 cut(s)	540
BmtI	GCTAGC	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	796
BsaHI	GRCGYC	1 cut(s)	722
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	2 cut(s)	498, 539
BsaWI	WCCGGW	2 cut(s)	160, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bse118I	RCCGGY	1 cut(s)	724
Bse1I	ACTGG	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	498, 539
BseGI	GGATG	1 cut(s)	508
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	2 cut(s)	26, 473
BseXI	GCAGC	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	2 cut(s)	52, 785
BshNI	GGYRCC	1 cut(s)	721
BsiSI	CCGG	5 cut(s)	161, 321, 698, 719, 725
BsmAI	GTCTC	4 cut(s)	191, 267, 355, 628
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	52, 785
Bso31I	GGTCTC	1 cut(s)	628
Bsp119I	TTCGAA	1 cut(s)	796
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	269, 312, 478, 520, 658
BspACI	CCGC	3 cut(s)	350, 728, 731
BspANI	GGCC	2 cut(s)	52, 785
BspEI	TCCGGA	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	723
BspOI	GCTAGC	1 cut(s)	738
BspPI	GGATC	3 cut(s)	307, 486, 666
BspQI	GCTCTTC	1 cut(s)	375
BspT104I	TTCGAA	1 cut(s)	796
BspT107I	GGYRCC	1 cut(s)	721
BspTNI	GGTCTC	1 cut(s)	628
BsrFI	RCCGGY	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	498, 539
BssMI	GATC	5 cut(s)	269, 312, 478, 520, 658
BssNI	GRCGYC	1 cut(s)	722
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	27, 639
Bst6I	CTCTTC	2 cut(s)	375, 401
BstACI	GRCGYC	1 cut(s)	722
BstBI	TTCGAA	1 cut(s)	796
BstC8I	GCNNGC	2 cut(s)	726, 736
BstDEI	CTNAG	1 cut(s)	761
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	338
BstH2I	RGCGCY	1 cut(s)	725
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	5 cut(s)	272, 315, 481, 523, 661
BstMAI	GTCTC	4 cut(s)	191, 267, 355, 628
BstMBI	GATC	5 cut(s)	269, 312, 478, 520, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 728
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	641
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	52, 785
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	726, 736
CfoI	GCGC	1 cut(s)	724
Cfr10I	RCCGGY	1 cut(s)	724
Csp6I	GTAC	1 cut(s)	454
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	1 cut(s)	776
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	761
DinI	GGCGCC	1 cut(s)	723
DpnI	GATC	5 cut(s)	271, 314, 480, 522, 660
DpnII	GATC	5 cut(s)	269, 312, 478, 520, 658
Eam1104I	CTCTTC	2 cut(s)	375, 401
EarI	CTCTTC	2 cut(s)	375, 401
Eco24I	GRGCYC	1 cut(s)	775
Eco31I	GGTCTC	1 cut(s)	628
Eco57I	CTGAAG	2 cut(s)	170, 290
EcoRII	CCWGG	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	775
EgeI	GGCGCC	1 cut(s)	723
EheI	GGCGCC	1 cut(s)	723
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	779
FaiI	YATR	5 cut(s)	188, 440, 476, 510, 777
FatI	CATG	1 cut(s)	775
Fnu4HI	GCNGC	3 cut(s)	630, 729, 732
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	775
Fsp4HI	GCNGC	3 cut(s)	630, 729, 732
FspBI	CTAG	5 cut(s)	122, 267, 482, 524, 735
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	3 cut(s)	630, 729, 732
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	725
HaeIII	GGCC	2 cut(s)	52, 785
HapII	CCGG	5 cut(s)	161, 321, 698, 719, 725
HhaI	GCGC	1 cut(s)	724
Hin1I	GRCGYC	1 cut(s)	722
Hin1II	CATG	1 cut(s)	779
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HincII	GTYRAC	2 cut(s)	334, 745
HindII	GTYRAC	2 cut(s)	334, 745
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	4 cut(s)	76, 118, 515, 532
HpaII	CCGG	5 cut(s)	161, 321, 698, 719, 725
HphI	GGTGA	2 cut(s)	175, 568
Hpy166II	GTNNAC	3 cut(s)	334, 342, 745
Hpy188I	TCNGA	9 cut(s)	46, 81, 247, 309, 373, 445, 499, 520, 649
Hpy188III	TCNNGA	4 cut(s)	61, 122, 321, 343
Hpy8I	GTNNAC	3 cut(s)	334, 342, 745
Hpy99I	CGWCG	2 cut(s)	135, 214
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	2 cut(s)	27, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 728
HpyF3I	CTNAG	1 cut(s)	761
Hsp92I	GRCGYC	1 cut(s)	722
Hsp92II	CATG	1 cut(s)	779
HspAI	GCGC	1 cut(s)	722
KasI	GGCGCC	1 cut(s)	721
Kpn2I	TCCGGA	1 cut(s)	320
KroI	GCCGGC	1 cut(s)	724
KroNI	GCCGGC	1 cut(s)	726
Kzo9I	GATC	5 cut(s)	269, 312, 478, 520, 658
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	8 cut(s)	25, 174, 334, 525, 552, 711, 732, 738
Lsp1109I	GCAGC	1 cut(s)	641
MaeI	CTAG	5 cut(s)	122, 267, 482, 524, 735
MaeIII	GTNAC	3 cut(s)	191, 543, 574
MalI	GATC	5 cut(s)	271, 314, 480, 522, 660
MboI	GATC	5 cut(s)	269, 312, 478, 520, 658
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	775
MluCI	AATT	1 cut(s)	154
MluI	ACGCGT	1 cut(s)	336
Mly113I	GGCGCC	1 cut(s)	722
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	423, 627
MreI	CGCCGGCG	1 cut(s)	724
MroI	TCCGGA	1 cut(s)	320
MroNI	GCCGGC	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	5 cut(s)	285, 465, 705, 749, 802
MspI	CCGG	5 cut(s)	161, 321, 698, 719, 725
MspR9I	CCNGG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	301, 728
NaeI	GCCGGC	1 cut(s)	726
NarI	GGCGCC	1 cut(s)	722
NdeII	GATC	5 cut(s)	269, 312, 478, 520, 658
NgoMIV	GCCGGC	1 cut(s)	724
NheI	GCTAGC	1 cut(s)	734
NlaIII	CATG	1 cut(s)	779
NlaIV	GGNNCC	1 cut(s)	723
NmuCI	GTSAC	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	796
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	76, 118, 532
PkrI	GCNGC	3 cut(s)	631, 730, 733
PleI	GAGTC	1 cut(s)	509
PluTI	GGCGCC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	723
PsuI	RGATCY	1 cut(s)	478
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	5 cut(s)	285, 465, 705, 749, 802
SatI	GCNGC	3 cut(s)	630, 729, 732
Sau3AI	GATC	5 cut(s)	269, 312, 478, 520, 658
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	1 cut(s)	775
SetI	ASST	4 cut(s)	170, 306, 465, 487
SfoI	GGCGCC	1 cut(s)	723
SfuI	TTCGAA	1 cut(s)	796
SgrAI	CRCCGGYG	1 cut(s)	724
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	3 cut(s)	350, 728, 731
SspDI	GGCGCC	1 cut(s)	721
SspMI	CTAG	5 cut(s)	122, 267, 482, 524, 735
StyD4I	CCNGG	1 cut(s)	538
TaaI	ACNGT	2 cut(s)	27, 639
TaqI	TCGA	4 cut(s)	30, 530, 788, 796
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	154
TauI	GCSGC	2 cut(s)	731, 734
TfiI	GAWTC	3 cut(s)	76, 118, 532
Tru1I	TTAA	5 cut(s)	285, 465, 705, 749, 802
Tru9I	TTAA	5 cut(s)	285, 465, 705, 749, 802
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	231, 314
TspRI	CASTG	1 cut(s)	153
XapI	RAATTY	1 cut(s)	154
XbaI	TCTAGA	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	5 cut(s)	122, 267, 482, 524, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.