FvH4_6g27710

Protein of unknown function (DUF1685)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
21368077 .. 21368871
795 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27710.t1

Sequence Viewer

Length: 795 bp
ATGGCTGCAAACGAAGTACCTCTGCTCAACCTCTTTGATTCCTTCTGGTTTGAACACGCAGTTTTCAGCTCCAAACCCCATGCAGCAGCAGACAACAACCCAAGTCTACAACCGGACCAAGAAGATCAAATACGAATCAAAGAGCCAAACCCTGCAGGATTGCCAACCCTTGTCGTCAGGTCACTTAGTGACCAATACCTTGACACCAAGTCGAGCTTCTTCTCTGATTCAAGCCTCTCTCCTCACTCGGTTCTCCCCACTCGGTCACGGAAGCTCCAGACAATCCCCTCCGGCAAAGAAGTACTCATAGACTTCTCAAGAGAGAGTACTGTTCCTGTGAAACAAGCACTTGAGGTTGGATCAGCACCATTGAAGAAAAAGGTGTTGCACAATGAAAGATCAAAAACAAGGAAGAGATCAGGGAGCAGCAAGAGCTTGTCGGACCTGGAGTTCGACGAGCTGAAAGGGTTTATGGATCTGGGGTTTGTGTTCACTGAGGAAGACAACAAGGACTCGAATCTGGTTGCCATAATTCCCGGCTTGCAAAGACTGCGAGTTAGTGATGAAGGTGAGGAACAAGATAGAGATCACGAAGAGAAGAGGATTGATGCAAGTCATCATCATCATCATTCACAGGTTGTTTCGAGGCCTTATCTGTCTGAAGCTTGGGATGCTTTGGAATATCAAAGAAAAGAGAACCAATTGATGAACTGGAGAGTTCCATCTGCTTTAGATAAAGACATGAAGCATCACCTCAAGTTCTGGGCTCATACAGTTGCATCAACCGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

265

Amino Acids

30.07

Weight (kDa)

6.23

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 106
AclWI GGATC 2 cut(s) 367, 483
AcuI CTGAAG 1 cut(s) 681
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 3 cut(s) 18, 303, 328
AgsI TTSAA 3 cut(s) 53, 231, 373
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 444
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 6 cut(s) 69, 216, 274, 435, 460, 665
AluI AGCT 6 cut(s) 69, 216, 274, 435, 460, 665
AlwI GGATC 2 cut(s) 367, 483
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 4 cut(s) 5, 83, 86, 426
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspS9I GGNCC 2 cut(s) 115, 442
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 2 cut(s) 581, 743
AvaII GGWCC 2 cut(s) 115, 442
BanII GRGCYC 1 cut(s) 769
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BbsI GAAGAC 1 cut(s) 507
BbvI GCAGC 3 cut(s) 95, 98, 438
BccI CCATC 1 cut(s) 730
BciT130I CCWGG 1 cut(s) 446
BcnI CCSGG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 4 cut(s) 6, 84, 87, 427
BlsI GCNGC 4 cut(s) 7, 85, 88, 428
BmcAI AGTACT 2 cut(s) 303, 328
Bme1390I CCNGG 2 cut(s) 446, 537
Bme18I GGWCC 2 cut(s) 115, 442
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 115, 442
BmrFI CCNGG 2 cut(s) 446, 537
BmsI GCATC 4 cut(s) 598, 661, 757, 788
BpiI GAAGAC 1 cut(s) 507
BpmI CTGGAG 3 cut(s) 260, 467, 733
BpuEI CTTGAG 3 cut(s) 301, 371, 740
BpuMI CCSGG 1 cut(s) 537
BsaBI GATNNNNATC 1 cut(s) 585
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bse1I ACTGG 1 cut(s) 716
Bse8I GATNNNNATC 1 cut(s) 585
BseBI CCWGG 1 cut(s) 446
BseGI GGATG 1 cut(s) 676
BseJI GATNNNNATC 1 cut(s) 585
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 716
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 3 cut(s) 95, 98, 438
BshFI GGCC 1 cut(s) 649
BsiSI CCGG 3 cut(s) 113, 291, 537
BsnI GGCC 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 6 cut(s) 124, 359, 398, 416, 475, 586
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 1 cut(s) 487
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 2 cut(s) 367, 483
BsrI ACTGG 1 cut(s) 716
BssMI GATC 6 cut(s) 124, 359, 398, 416, 475, 586
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 3 cut(s) 331, 775, 787
Bst6I CTCTTC 3 cut(s) 407, 588, 593
BstAPI GCANNNNNTGC 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 2 cut(s) 185, 495
BstF5I GGATG 1 cut(s) 676
BstKTI GATC 6 cut(s) 127, 362, 401, 419, 478, 589
BstMBI GATC 6 cut(s) 124, 359, 398, 416, 475, 586
BstMWI GCNNNNNNNGC 3 cut(s) 432, 550, 671
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 444, 535
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 95, 98, 438
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 1 cut(s) 649
BtsCI GGATG 1 cut(s) 676
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 542
Cfr13I GGNCC 2 cut(s) 115, 442
Csp6I GTAC 3 cut(s) 17, 302, 327
CviAII CATG 2 cut(s) 80, 742
CviQI GTAC 3 cut(s) 17, 302, 327
DdeI CTNAG 2 cut(s) 185, 495
DpnI GATC 6 cut(s) 126, 361, 400, 418, 477, 588
DpnII GATC 6 cut(s) 124, 359, 398, 416, 475, 586
DraIII CACNNNGTG 1 cut(s) 188
DriI GACNNNNNGTC 1 cut(s) 208
Eam1104I CTCTTC 3 cut(s) 407, 588, 593
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 3 cut(s) 407, 588, 593
Eco147I AGGCCT 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 115, 442
Eco57I CTGAAG 1 cut(s) 681
EcoRII CCWGG 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 769
FaeI CATG 2 cut(s) 83, 745
FaiI YATR 6 cut(s) 81, 308, 473, 530, 743, 771
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 2 cut(s) 79, 741
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 6, 84, 87, 427
FokI GGATG 1 cut(s) 683
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 4 cut(s) 6, 84, 87, 427
GluI GCNGC 4 cut(s) 6, 84, 87, 427
GsuI CTGGAG 3 cut(s) 260, 467, 733
HaeIII GGCC 1 cut(s) 649
HapII CCGG 3 cut(s) 113, 291, 537
Hin1II CATG 2 cut(s) 83, 745
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 5 cut(s) 38, 135, 227, 512, 517
HpaII CCGG 3 cut(s) 113, 291, 537
HphI GGTGA 2 cut(s) 581, 743
Hpy166II GTNNAC 2 cut(s) 107, 492
Hpy188I TCNGA 3 cut(s) 226, 442, 661
Hpy188III TCNNGA 3 cut(s) 277, 318, 590
Hpy8I GTNNAC 2 cut(s) 107, 492
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 2 cut(s) 52, 560
HpyCH4III ACNGT 3 cut(s) 331, 775, 787
HpyCH4V TGCA 7 cut(s) 8, 83, 155, 388, 544, 611, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 432, 550, 671
HpyF3I CTNAG 2 cut(s) 185, 495
Hsp92II CATG 2 cut(s) 83, 745
Kzo9I GATC 6 cut(s) 124, 359, 398, 416, 475, 586
LmnI GCTCC 3 cut(s) 74, 279, 423
Lsp1109I GCAGC 3 cut(s) 95, 98, 438
LweI GCATC 4 cut(s) 598, 661, 757, 788
MaeIII GTNAC 3 cut(s) 180, 188, 264
MalI GATC 6 cut(s) 126, 361, 400, 418, 477, 588
MboI GATC 6 cut(s) 124, 359, 398, 416, 475, 586
MboII GAAGA 7 cut(s) 134, 211, 385, 424, 512, 605, 610
MfeI CAATTG 1 cut(s) 701
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 769
MluCI AATT 2 cut(s) 531, 701
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 2 cut(s) 337, 420
MspI CCGG 3 cut(s) 113, 291, 537
MspR9I CCNGG 2 cut(s) 446, 537
MunI CAATTG 1 cut(s) 701
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 3 cut(s) 432, 550, 671
NciI CCSGG 1 cut(s) 537
NdeII GATC 6 cut(s) 124, 359, 398, 416, 475, 586
NlaIII CATG 2 cut(s) 83, 745
NmuCI GTSAC 3 cut(s) 180, 188, 264
PceI AGGCCT 1 cut(s) 649
PfeI GAWTC 4 cut(s) 38, 135, 227, 517
PkrI GCNGC 4 cut(s) 7, 85, 88, 428
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspPI GGNCC 2 cut(s) 115, 442
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 3 cut(s) 18, 303, 328
RsaNI GTAC 3 cut(s) 17, 302, 327
SatI GCNGC 4 cut(s) 6, 84, 87, 427
Sau3AI GATC 6 cut(s) 124, 359, 398, 416, 475, 586
Sau96I GGNCC 2 cut(s) 115, 442
SbfI CCTGCAGG 1 cut(s) 157
ScaI AGTACT 2 cut(s) 303, 328
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 446, 537
SdaI CCTGCAGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 4 cut(s) 598, 661, 757, 788
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 2 cut(s) 115, 442
SmlI CTYRAG 3 cut(s) 316, 350, 755
SmoI CTYRAG 3 cut(s) 316, 350, 755
Sse8387I CCTGCAGG 1 cut(s) 157
Sse9I AATT 2 cut(s) 531, 701
SseBI AGGCCT 1 cut(s) 649
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 2 cut(s) 444, 535
TaaI ACNGT 3 cut(s) 331, 775, 787
TaqI TCGA 4 cut(s) 212, 453, 515, 644
TaqII GACCGA 1 cut(s) 252
TasI AATT 2 cut(s) 531, 701
TatI WGTACW 2 cut(s) 301, 326
TfiI GAWTC 4 cut(s) 38, 135, 227, 517
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 3 cut(s) 180, 188, 264
TseI GCWGC 4 cut(s) 5, 83, 86, 426
Tsp45I GTSAC 3 cut(s) 180, 188, 264
TspDTI ATGAA 4 cut(s) 408, 579, 722, 758
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 115, 442
XmiI GTMKAC 1 cut(s) 106
ZrmI AGTACT 2 cut(s) 303, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.