Rroxscaffold_2G00113480

Protein of unknown function (DUF1685)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
39111050 .. 39111814
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113480.1

Sequence Viewer

Length: 765 bp
ATGGCTGCAGACGAAGTACCTCTGCTCAACCTCTTTGATTCCTACTGGTTTGAACACGCAGTTTTCAGTTCCAAACCCCATGCAGCAGCAGCAACAAACAACCCAAGTCTCCAACTGGACCAAGAACCAAACCCTTCAGGATTGCCAGCCCTTATCGTGAGGTCACTAAGTGACCAATTCCTGGACACCAAGTCAAGCCTTTTCTCCGATTCGAGCTTCTCTCCCCACTCGGTTCTCCCCACTCGGTCACGAAAGCTTCAGACAATCCCCTCCGGCAAAGAAGTACTCATAGACTTCTCTAGAGAGAGTGTTCCTGAAAAACAAGTACTTGAGGTTGGGTCAGCACCACTGAAGAAAAGGGTGTTGCACAGTGAAAGATCAAAAACAAGGAAAAGATTAGGGAGCAGCAAGAGCTTGTCGGACCTCGAGTTTGACGAGCTTAAAGGGTTTATGGATCTGGGGTTTGTGTTCACTGAGGAAGACAACAAGGACTCGAAGCTGGTTTCGATAATTCCCGGCTTGCAAAGACTAGGAGTTAGTGATGAAGGTGAGGAAGAAGATAGAGATGAAGAGAAGAGGATTGATGGAAGTCATCATCATTCACATGTTGTTTCCAGGCCTTATCTGTCTGAAGCTTGGGATGCTTTGGAATATCAAAGAAAAGAGGACCAGTTGATGAATTGGAGAGTTCCATCTGCTGTTGATAAAGACATGAAGCATCATCTCAAGTTCTGGGCTCATACAGTTGCATCAACCGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

254

Amino Acids

28.75

Weight (kDa)

5.78

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 181
AclWI GGATC 1 cut(s) 462
AcuI CTGAAG 4 cut(s) 120, 242, 371, 651
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 3 cut(s) 18, 285, 327
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 1 cut(s) 53
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 2 cut(s) 180, 614
AluBI AGCT 6 cut(s) 216, 256, 414, 439, 499, 635
AluI AGCT 6 cut(s) 216, 256, 414, 439, 499, 635
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 462
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 1 cut(s) 617
ApeKI GCWGC 5 cut(s) 5, 83, 86, 89, 405
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AspS9I GGNCC 3 cut(s) 118, 421, 667
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 3 cut(s) 118, 421, 667
BanII GRGCYC 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 486
BbvI GCAGC 4 cut(s) 95, 98, 101, 417
BccI CCATC 2 cut(s) 578, 700
BciT130I CCWGG 2 cut(s) 182, 616
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 300, 530
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 5 cut(s) 6, 84, 87, 90, 406
BlsI GCNGC 5 cut(s) 7, 85, 88, 91, 407
BmcAI AGTACT 2 cut(s) 285, 327
Bme1390I CCNGG 3 cut(s) 182, 516, 616
Bme18I GGWCC 3 cut(s) 118, 421, 667
BmeRI GACNNNNNGTC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 3 cut(s) 118, 421, 667
BmrFI CCNGG 3 cut(s) 182, 516, 616
BmsI GCATC 3 cut(s) 631, 727, 758
BpiI GAAGAC 1 cut(s) 486
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpuEI CTTGAG 2 cut(s) 350, 710
BpuMI CCSGG 1 cut(s) 516
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 3 cut(s) 50, 120, 670
BseBI CCWGG 2 cut(s) 182, 616
BseGI GGATG 1 cut(s) 646
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 3 cut(s) 50, 120, 670
BseXI GCAGC 4 cut(s) 95, 98, 101, 417
BshFI GGCC 1 cut(s) 619
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 2 cut(s) 273, 516
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 619
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 739
Bsp143I GATC 2 cut(s) 377, 454
BspANI GGCC 1 cut(s) 619
BspCNI CTCAG 1 cut(s) 466
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 462
BsrI ACTGG 3 cut(s) 50, 120, 670
BssMI GATC 2 cut(s) 377, 454
Bst2UI CCWGG 2 cut(s) 182, 616
Bst4CI ACNGT 3 cut(s) 371, 745, 757
Bst6I CTCTTC 2 cut(s) 564, 569
BstC8I GCNNGC 2 cut(s) 147, 521
BstDEI CTNAG 2 cut(s) 167, 474
BstF5I GGATG 1 cut(s) 646
BstKTI GATC 2 cut(s) 380, 457
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 377, 454
BstMWI GCNNNNNNNGC 3 cut(s) 89, 411, 641
BstNI CCWGG 2 cut(s) 182, 616
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 3 cut(s) 180, 514, 614
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 4 cut(s) 95, 98, 101, 417
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 1 cut(s) 619
BtsCI GGATG 1 cut(s) 646
BtsIMutI CAGTG 3 cut(s) 347, 376, 471
Cac8I GCNNGC 2 cut(s) 147, 521
Cfr13I GGNCC 3 cut(s) 118, 421, 667
Csp6I GTAC 3 cut(s) 17, 284, 326
CviAII CATG 3 cut(s) 80, 605, 712
CviQI GTAC 3 cut(s) 17, 284, 326
DdeI CTNAG 2 cut(s) 167, 474
DpnI GATC 2 cut(s) 379, 456
DpnII GATC 2 cut(s) 377, 454
DraIII CACNNNGTG 1 cut(s) 170
DriI GACNNNNNGTC 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 564, 569
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 2 cut(s) 564, 569
Eco147I AGGCCT 1 cut(s) 619
Eco24I GRGCYC 1 cut(s) 739
Eco47I GGWCC 3 cut(s) 118, 421, 667
Eco57I CTGAAG 4 cut(s) 120, 242, 371, 651
Eco88I CYCGRG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 180, 614
EcoT38I GRGCYC 1 cut(s) 739
FaeI CATG 3 cut(s) 83, 608, 715
FaiI YATR 6 cut(s) 81, 290, 452, 606, 713, 741
FatI CATG 3 cut(s) 79, 604, 711
Fnu4HI GCNGC 5 cut(s) 6, 84, 87, 90, 406
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 739
Fsp4HI GCNGC 5 cut(s) 6, 84, 87, 90, 406
FspBI CTAG 2 cut(s) 300, 530
GluI GCNGC 5 cut(s) 6, 84, 87, 90, 406
HaeIII GGCC 1 cut(s) 619
HapII CCGG 2 cut(s) 273, 516
Hin1II CATG 3 cut(s) 83, 608, 715
HindIII AAGCTT 2 cut(s) 254, 633
HinfI GANTC 3 cut(s) 38, 209, 491
HpaII CCGG 2 cut(s) 273, 516
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 4 cut(s) 208, 261, 421, 631
Hpy188III TCNNGA 5 cut(s) 138, 157, 249, 300, 314
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 2 cut(s) 144, 539
HpyCH4III ACNGT 3 cut(s) 371, 745, 757
HpyCH4V TGCA 5 cut(s) 8, 83, 367, 523, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 411, 641
HpyF3I CTNAG 2 cut(s) 167, 474
Hsp92II CATG 3 cut(s) 83, 608, 715
Kzo9I GATC 2 cut(s) 377, 454
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 4 cut(s) 95, 98, 101, 417
LweI GCATC 3 cut(s) 631, 727, 758
MaeI CTAG 2 cut(s) 300, 530
MaeIII GTNAC 3 cut(s) 162, 170, 246
MalI GATC 2 cut(s) 379, 456
MboI GATC 2 cut(s) 377, 454
MboII GAAGA 6 cut(s) 364, 491, 566, 569, 581, 586
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 3 cut(s) 176, 510, 679
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 136, 399
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 603
MspI CCGG 2 cut(s) 273, 516
MspR9I CCNGG 3 cut(s) 182, 516, 616
MvaI CCWGG 2 cut(s) 182, 616
MwoI GCNNNNNNNGC 3 cut(s) 89, 411, 641
NciI CCSGG 1 cut(s) 516
NdeII GATC 2 cut(s) 377, 454
NlaIII CATG 3 cut(s) 83, 608, 715
NmuCI GTSAC 3 cut(s) 162, 170, 246
NspI RCATGY 1 cut(s) 608
PaeR7I CTCGAG 1 cut(s) 425
PceI AGGCCT 1 cut(s) 619
PciI ACATGT 1 cut(s) 604
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 2 cut(s) 38, 209
PflMI CCANNNNNTGG 1 cut(s) 181
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 5 cut(s) 7, 85, 88, 91, 407
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PscI ACATGT 1 cut(s) 604
Psp6I CCWGG 2 cut(s) 180, 614
PspGI CCWGG 2 cut(s) 180, 614
PspPI GGNCC 3 cut(s) 118, 421, 667
PspXI VCTCGAGB 1 cut(s) 425
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 3 cut(s) 18, 285, 327
RsaNI GTAC 3 cut(s) 17, 284, 326
RseI CAYNNNNRTG 1 cut(s) 603
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 5 cut(s) 6, 84, 87, 90, 406
Sau3AI GATC 2 cut(s) 377, 454
Sau96I GGNCC 3 cut(s) 118, 421, 667
ScaI AGTACT 2 cut(s) 285, 327
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 3 cut(s) 182, 516, 616
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 3 cut(s) 631, 727, 758
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 3 cut(s) 118, 421, 667
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 603
SmlI CTYRAG 3 cut(s) 329, 425, 725
SmoI CTYRAG 3 cut(s) 329, 425, 725
Sse9I AATT 3 cut(s) 176, 510, 679
SseBI AGGCCT 1 cut(s) 619
SspMI CTAG 2 cut(s) 300, 530
StuI AGGCCT 1 cut(s) 619
StyD4I CCNGG 3 cut(s) 180, 514, 614
TaaI ACNGT 3 cut(s) 371, 745, 757
TaqI TCGA 4 cut(s) 212, 426, 494, 506
TaqII GACCGA 1 cut(s) 234
TasI AATT 3 cut(s) 176, 510, 679
TatI WGTACW 2 cut(s) 283, 325
TfiI GAWTC 2 cut(s) 38, 209
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 3 cut(s) 354, 376, 478
TseFI GTSAC 3 cut(s) 162, 170, 246
TseI GCWGC 5 cut(s) 5, 83, 86, 89, 405
Tsp45I GTSAC 3 cut(s) 162, 170, 246
TspDTI ATGAA 4 cut(s) 558, 582, 692, 728
TspRI CASTG 3 cut(s) 354, 376, 478
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 3 cut(s) 118, 421, 667
XbaI TCTAGA 1 cut(s) 299
XceI RCATGY 1 cut(s) 608
XhoI CTCGAG 1 cut(s) 425
XspI CTAG 2 cut(s) 300, 530
ZrmI AGTACT 2 cut(s) 285, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.