FvH4_5g20610

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003875
Physical Location & Seq
Reverse (-)
12214904 .. 12215614
711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20610.t1

Sequence Viewer

Length: 711 bp
ATGGAAGCAGAGCAAATGATGGAGCTCTTTGATTCTTTCTGGTTTGAGCTTGAAATCCTCAAGAAACAACCATCTTCAGCAACCTCATCAAGATTTGAAGCAGACCTAGTTCATGAAAATGAAGATCAACAACCATCAAAACCAGAGGTCTTACAGATTCCAAGCCTCCATACTAGATCCCTGAGCGACGATTTGAGCTCCGAAACTAGCTTTATCAACTGCGGTTCTCTCTCGCCAGACTCAGTCCTCCACAGACCGAAGCTTAGCACCATTGTTTCTGGAAAAGAAGTCACAGCTTCAATGGCAGATAATATTCCTGTATTACATAAACATGAAGTAAAGTCATCAAACAAGGCTAAAATTGAGAGAAGAAGAAAGAAGAGCGGGAGCAAGAGCTTGACAGACCTTCAGTTTGAGGAGCTTAAAGGGTTTATGGATCTGGGATTCGTCTTCTCAGAAGAAGACAAAGACTCAAACTTGGCTTCCATCATTCCTGGTCTGAAGAAATTAGGTGTAGACGACGATGAAGCTTTTGATGATGAGTCTGCGATTTCAAGGCCTCATCTTTCTGAAGCGTGGGAGGTGATGGAGAAGAGAAAGAAAGAGAAGAATCCATTGATGGATTGGAGGTTTCCATCTTTGAGCAATGAAATGGACATGAAGGACAATCTCAGATGGTGGGCTCATACTGTTGCTTCCACAGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

237

Amino Acids

26.91

Weight (kDa)

5.19

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 133 - 167 9.2e-06 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 516
AciI CCGC 2 cut(s) 222, 384
AclWI GGATC 2 cut(s) 171, 444
AcuI CTGAAG 4 cut(s) 60, 392, 521, 591
AgsI TTSAA 4 cut(s) 53, 98, 300, 555
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 9 cut(s) 25, 49, 198, 210, 262, 296, 396, 421, 530
AluI AGCT 9 cut(s) 25, 49, 198, 210, 262, 296, 396, 421, 530
Alw21I GWGCWC 2 cut(s) 27, 200
AlwI GGATC 2 cut(s) 171, 444
AoxI GGCC 1 cut(s) 557
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
AsuHPI GGTGA 1 cut(s) 595
BanII GRGCYC 3 cut(s) 27, 200, 685
BbsI GAAGAC 2 cut(s) 442, 468
Bbv12I GWGCWC 2 cut(s) 27, 200
BccI CCATC 8 cut(s) 13, 79, 142, 494, 580, 613, 643, 669
BciT130I CCWGG 1 cut(s) 495
BfaI CTAG 3 cut(s) 107, 174, 207
BlpI GCTNAGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 495
BmrFI CCNGG 1 cut(s) 495
BpiI GAAGAC 2 cut(s) 442, 468
Bpu10I CCTNAGC 1 cut(s) 182
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 652
BseBI CCWGG 1 cut(s) 495
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 4 cut(s) 173, 255, 468, 685
BseRI GAGGAG 1 cut(s) 431
BshFI GGCC 1 cut(s) 559
BsiHKAI GWGCWC 2 cut(s) 27, 200
BsnI GGCC 1 cut(s) 559
Bsp1286I GDGCHC 3 cut(s) 27, 200, 685
Bsp143I GATC 3 cut(s) 124, 176, 436
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 2 cut(s) 222, 384
BspANI GGCC 1 cut(s) 559
BspCNI CTCAG 4 cut(s) 174, 254, 467, 684
BspHI TCATGA 1 cut(s) 112
BspPI GGATC 2 cut(s) 171, 444
BspQI GCTCTTC 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 652
BssMI GATC 3 cut(s) 124, 176, 436
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 2 cut(s) 691, 703
Bst6I CTCTTC 2 cut(s) 374, 587
BstDEI CTNAG 5 cut(s) 182, 241, 263, 454, 671
BstKTI GATC 3 cut(s) 127, 179, 439
BstMBI GATC 3 cut(s) 124, 176, 436
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstV2I GAAGAC 2 cut(s) 442, 468
BstX2I RGATCY 2 cut(s) 176, 436
BstYI RGATCY 2 cut(s) 176, 436
BsuRI GGCC 1 cut(s) 559
CciI TCATGA 1 cut(s) 112
CviAII CATG 3 cut(s) 113, 332, 658
DdeI CTNAG 5 cut(s) 182, 241, 263, 454, 671
DpnI GATC 3 cut(s) 126, 178, 438
DpnII GATC 3 cut(s) 124, 176, 436
Eam1104I CTCTTC 2 cut(s) 374, 587
EarI CTCTTC 2 cut(s) 374, 587
Ecl136II GAGCTC 2 cut(s) 25, 198
Eco147I AGGCCT 1 cut(s) 559
Eco24I GRGCYC 3 cut(s) 27, 200, 685
Eco53kI GAGCTC 2 cut(s) 25, 198
Eco57I CTGAAG 4 cut(s) 60, 392, 521, 591
EcoICRI GAGCTC 2 cut(s) 25, 198
EcoRII CCWGG 1 cut(s) 493
EcoT38I GRGCYC 3 cut(s) 27, 200, 685
FaeI CATG 3 cut(s) 116, 335, 661
FaiI YATR 7 cut(s) 114, 171, 327, 333, 434, 659, 687
FatI CATG 3 cut(s) 112, 331, 657
FauI CCCGC 1 cut(s) 377
FblI GTMKAC 1 cut(s) 516
FriOI GRGCYC 3 cut(s) 27, 200, 685
FspBI CTAG 3 cut(s) 107, 174, 207
HaeIII GGCC 1 cut(s) 559
Hin1II CATG 3 cut(s) 116, 335, 661
HindIII AAGCTT 2 cut(s) 260, 528
HinfI GANTC 7 cut(s) 32, 157, 239, 444, 470, 542, 610
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 5 cut(s) 202, 457, 501, 571, 674
Hpy188III TCNNGA 4 cut(s) 61, 90, 113, 279
Hpy8I GTNNAC 1 cut(s) 517
Hpy99I CGWCG 2 cut(s) 191, 524
HpyAV CCTTC 2 cut(s) 416, 655
HpyCH4III ACNGT 2 cut(s) 691, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 5 cut(s) 182, 241, 263, 454, 671
Hsp92II CATG 3 cut(s) 116, 335, 661
Kzo9I GATC 3 cut(s) 124, 176, 436
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 4 cut(s) 22, 203, 387, 418
LpnPI CCDG 9 cut(s) 25, 156, 194, 249, 264, 330, 425, 480, 507
MaeI CTAG 3 cut(s) 107, 174, 207
MaeIII GTNAC 1 cut(s) 289
MalI GATC 3 cut(s) 126, 178, 438
MbiI CCGCTC 1 cut(s) 384
MboI GATC 3 cut(s) 124, 176, 436
MflI RGATCY 2 cut(s) 176, 436
MhlI GDGCHC 3 cut(s) 27, 200, 685
MluCI AATT 2 cut(s) 360, 506
MlyI GAGTC 3 cut(s) 233, 464, 551
MnlI CCTC 9 cut(s) 68, 94, 139, 176, 257, 409, 570, 574, 621
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 2 cut(s) 117, 330
MspR9I CCNGG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 3 cut(s) 124, 176, 436
NlaIII CATG 3 cut(s) 116, 335, 661
NmuCI GTSAC 1 cut(s) 289
PagI TCATGA 1 cut(s) 112
PceI AGGCCT 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 374
PfeI GAWTC 4 cut(s) 32, 157, 444, 610
PflFI GACNNNGTC 1 cut(s) 242
PleI GAGTC 3 cut(s) 233, 464, 550
PpsI GAGTC 3 cut(s) 233, 464, 550
Psp124BI GAGCTC 2 cut(s) 27, 200
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PsuI RGATCY 2 cut(s) 176, 436
PsyI GACNNNGTC 1 cut(s) 242
RseI CAYNNNNRTG 2 cut(s) 117, 330
SacI GAGCTC 2 cut(s) 27, 200
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 423
Sau3AI GATC 3 cut(s) 124, 176, 436
SchI GAGTC 3 cut(s) 233, 464, 551
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 3 cut(s) 27, 200, 685
SmiMI CAYNNNNRTG 2 cut(s) 117, 330
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 360, 506
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 2 cut(s) 222, 384
SspI AATATT 1 cut(s) 313
SspMI CTAG 3 cut(s) 107, 174, 207
SstI GAGCTC 2 cut(s) 27, 200
StuI AGGCCT 1 cut(s) 559
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 2 cut(s) 691, 703
TaqII GACCGA 1 cut(s) 271
TasI AATT 2 cut(s) 360, 506
TfiI GAWTC 4 cut(s) 32, 157, 444, 610
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 7 cut(s) 101, 129, 135, 348, 540, 663, 674
Tth111I GACNNNGTC 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 3 cut(s) 107, 174, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.