Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003875

Physical Location & Seq

Genomic Coordinates Forward (+)

9480407 .. 9481624

Gene Structure 1218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G113400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTGCAGAAGAAGAAGAAGAAGAAGTAGTGCTTCTCAGCCTCTTTGATTCATGCTGGTTTGAACATGAAATTTTGAGCAAGAAATCCCTTTCAAAACCCCAAGAAGCAACAAACCCAAGTCTCCAAGTGGACCAATCAGCCCAAGAAGCAACCCAACAACAAGTACCAAATTTCCCCAGACTTTCATGCTTGCCAAGGTCTCTAAGTGATGACCAATCTTCAAACACCAAAGGGAGCCTCATCTCTTCTGATTCTCTCTCCCCACACTCAATCCTCATGAGCACCACACCAAAATTCCAAACAGTTTTCTCTGGTAAACAAGTCATAGAGTTCTCCAAACAAAGTGTGAAACAAGAACAAGTGCCAGCAGCTCAGACAAAAAGGGTCCATGGTCATGGTAAAAGAAACAGAAGTAGAAGAAGAGTAGGGCCCAGCAAGAGCTTGTCTGACCTGGAGTTTGATGAGCTCAAGGGTTTTATGGATTTGGGTTTTGTGTTCACTGAGGAAGACAAGGATTCAAAATTGGTTTCCATAATTCCTGGTTTGCAAAGGCTTGGAAGTATTGGGGAACAAGATAGAGATGAAGAGGATCGGAGAAATAATAATCATAATAATATTGATCCAAGTAGTCATCATGTGGTTTCAAGGCCCTATCTCTCTGAGGCTTGGGATGCTTTGGATCAAAGAAACAAAGAGAACAAGTTGGTGAATTGGAGAATACCAGCTAATTTAGGTAAGGACATGAAGCATAATCTCAGGTTTTGGGCTCATACTGTTGCATCAACTGTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

266

Amino Acids

30.05

Weight (kDa)

6.32

Isoelectric Point (pI)

72.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42760
fragaria_vesca	FvH4_3g07380 FvH4_5g20610 FvH4_6g27710
malus_domestica	MD05G1027400.v1.1 MD05G1296400.v1.1 MD08G1224000.v1.1 MD10G1276400.v1.1
prunus_persica	Prupe.3G113400_v2.0.a1 Prupe.4G066000_v2.0.a1
pyrus_communis	pycom05g27480 pycom09g15340 pycom10g23080
rosa_chinensis	RchiOBHm_Chr2g0130861 RchiOBHm_Chr5g0011511
rosa_laevigata	RLG00000019155 RLG00000031842
rosa_multiflora	Rmu_sc0003629.1_g000018 Rmu_sc0009001.1_g000007 Rmu_sc0009975.1_g000027 Rmu_sc0009975.1_g000028
rosa_roxburghii	Rroxscaffold_1G00064940 Rroxscaffold_2G00113480
rosa_rugosa	Rorug02G0293800 Rorug04G0457500
rosa_samantha	Rh2AG345100 Rh2CG332000 Rh2DG371400 Rh5AG089300 Rh5BG084600 Rh5CG098300 Rh5DG084600
rosa_wichuraiana	Rw2G027450 Rw5G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	600, 617, 690
AcsI	RAATTY	3 cut(s)	72, 172, 296
AfaI	GTAC	1 cut(s)	168
AgsI	TTSAA	5 cut(s)	65, 96, 225, 522, 648
AjnI	CCWGG	2 cut(s)	453, 541
AluBI	AGCT	4 cut(s)	374, 444, 469, 728
AluI	AGCT	4 cut(s)	374, 444, 469, 728
Alw21I	GWGCWC	2 cut(s)	287, 471
Alw26I	GTCTC	2 cut(s)	128, 207
AlwI	GGATC	3 cut(s)	600, 617, 690
AoxI	GGCC	2 cut(s)	431, 650
ApaI	GGGCCC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	5, 371
ApoI	RAATTY	3 cut(s)	72, 172, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AspS9I	GGNCC	5 cut(s)	133, 388, 431, 432, 651
AsuHPI	GGTGA	1 cut(s)	721
AvaII	GGWCC	2 cut(s)	133, 388
BaeGI	GKGCMC	1 cut(s)	435
BanII	GRGCYC	3 cut(s)	435, 471, 772
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	287, 471
BbvI	GCAGC	1 cut(s)	383
BciT130I	CCWGG	2 cut(s)	455, 543
BcoDI	GTCTC	2 cut(s)	128, 207
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	6, 372
BlsI	GCNGC	2 cut(s)	7, 373
Bme1390I	CCNGG	2 cut(s)	455, 543
Bme18I	GGWCC	2 cut(s)	133, 388
BmgT120I	GGNCC	5 cut(s)	133, 388, 431, 432, 651
BmiI	GGNNCC	3 cut(s)	239, 389, 433
BmrFI	CCNGG	2 cut(s)	455, 543
BmsI	GCATC	2 cut(s)	664, 791
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	197, 391
BseBI	CCWGG	2 cut(s)	455, 543
BseDI	CCNNGG	2 cut(s)	197, 391
BseGI	GGATG	1 cut(s)	679
BseMII	CTCAG	5 cut(s)	52, 389, 495, 654, 772
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	383
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	2 cut(s)	433, 652
BsiHKAI	GWGCWC	2 cut(s)	287, 471
BsmAI	GTCTC	2 cut(s)	128, 207
BsnI	GGCC	2 cut(s)	433, 652
Bso31I	GGTCTC	1 cut(s)	207
Bsp120I	GGGCCC	1 cut(s)	431
Bsp1286I	GDGCHC	4 cut(s)	287, 435, 471, 772
Bsp143I	GATC	3 cut(s)	592, 622, 682
Bsp19I	CCATGG	1 cut(s)	391
BspANI	GGCC	2 cut(s)	433, 652
BspCNI	CTCAG	5 cut(s)	51, 388, 496, 655, 771
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	239, 389, 433
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	3 cut(s)	600, 617, 690
BspTNI	GGTCTC	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	197, 391
BssMI	GATC	3 cut(s)	592, 622, 682
BssT1I	CCWWGG	2 cut(s)	197, 391
Bst2UI	CCWGG	2 cut(s)	455, 543
Bst4CI	ACNGT	3 cut(s)	307, 778, 790
Bst6I	CTCTTC	3 cut(s)	253, 418, 582
BstC8I	GCNNGC	2 cut(s)	194, 369
BstDEI	CTNAG	6 cut(s)	38, 206, 375, 504, 663, 758
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	679
BstKTI	GATC	3 cut(s)	595, 625, 685
BstMAI	GTCTC	2 cut(s)	128, 207
BstMBI	GATC	3 cut(s)	592, 622, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 674
BstNI	CCWGG	2 cut(s)	455, 543
BstSCI	CCNGG	2 cut(s)	453, 541
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	516
BstXI	CCANNNNNNTGG	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	433, 652
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	194, 369
CciI	TCATGA	1 cut(s)	279
Cfr13I	GGNCC	5 cut(s)	133, 388, 431, 432, 651
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	8 cut(s)	54, 68, 189, 280, 392, 398, 638, 745
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	6 cut(s)	38, 206, 375, 504, 663, 758
DpnI	GATC	3 cut(s)	594, 624, 684
DpnII	GATC	3 cut(s)	592, 622, 682
Eam1104I	CTCTTC	3 cut(s)	253, 418, 582
EarI	CTCTTC	3 cut(s)	253, 418, 582
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	2 cut(s)	197, 391
Eco24I	GRGCYC	3 cut(s)	435, 471, 772
Eco31I	GGTCTC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	133, 388
Eco53kI	GAGCTC	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	469
EcoO109I	RGGNCCY	2 cut(s)	431, 651
EcoRII	CCWGG	2 cut(s)	453, 541
EcoT14I	CCWWGG	2 cut(s)	197, 391
EcoT38I	GRGCYC	3 cut(s)	435, 471, 772
ErhI	CCWWGG	2 cut(s)	197, 391
FaeI	CATG	8 cut(s)	57, 71, 192, 283, 395, 401, 641, 748
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	8 cut(s)	53, 67, 188, 279, 391, 397, 637, 744
Fnu4HI	GCNGC	2 cut(s)	6, 372
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	3 cut(s)	435, 471, 772
Fsp4HI	GCNGC	2 cut(s)	6, 372
GluI	GCNGC	2 cut(s)	6, 372
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	433, 652
Hin1II	CATG	8 cut(s)	57, 71, 192, 283, 395, 401, 641, 748
HinfI	GANTC	3 cut(s)	50, 254, 518
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	3 cut(s)	133, 320, 501
Hpy188I	TCNGA	5 cut(s)	253, 378, 451, 597, 664
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	3 cut(s)	133, 320, 501
HpyCH4III	ACNGT	3 cut(s)	307, 778, 790
HpyCH4V	TGCA	3 cut(s)	8, 550, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 674
HpyF3I	CTNAG	6 cut(s)	38, 206, 375, 504, 663, 758
Hsp92II	CATG	8 cut(s)	57, 71, 192, 283, 395, 401, 641, 748
Kzo9I	GATC	3 cut(s)	592, 622, 682
LmnI	GCTCC	1 cut(s)	237
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	2 cut(s)	664, 791
MalI	GATC	3 cut(s)	594, 624, 684
MboI	GATC	3 cut(s)	592, 622, 682
MhlI	GDGCHC	4 cut(s)	287, 435, 471, 772
MluCI	AATT	7 cut(s)	72, 172, 296, 524, 537, 712, 730
MnlI	CCTC	6 cut(s)	53, 251, 287, 499, 583, 658
MslI	CAYNNNNRTG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	455, 543
MvaI	CCWGG	2 cut(s)	455, 543
MwoI	GCNNNNNNNGC	2 cut(s)	149, 674
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	3 cut(s)	592, 622, 682
NlaIII	CATG	8 cut(s)	57, 71, 192, 283, 395, 401, 641, 748
NlaIV	GGNNCC	3 cut(s)	239, 389, 433
PagI	TCATGA	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	50, 254, 518
PkrI	GCNGC	2 cut(s)	7, 373
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	453, 541
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	2 cut(s)	453, 541
PspN4I	GGNNCC	3 cut(s)	239, 389, 433
PspOMI	GGGCCC	1 cut(s)	431
PspPI	GGNCC	5 cut(s)	133, 388, 431, 432, 651
PstI	CTGCAG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	471
SatI	GCNGC	2 cut(s)	6, 372
Sau3AI	GATC	3 cut(s)	592, 622, 682
Sau96I	GGNCC	5 cut(s)	133, 388, 431, 432, 651
ScrFI	CCNGG	2 cut(s)	455, 543
SduI	GDGCHC	4 cut(s)	287, 435, 471, 772
SetI	ASST	8 cut(s)	203, 376, 446, 456, 471, 730, 739, 764
SfaNI	GCATC	2 cut(s)	664, 791
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	133, 388
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	7 cut(s)	72, 172, 296, 524, 537, 712, 730
SspI	AATATT	1 cut(s)	619
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	2 cut(s)	453, 541
StyI	CCWWGG	2 cut(s)	197, 391
TaaI	ACNGT	3 cut(s)	307, 778, 790
TasI	AATT	7 cut(s)	72, 172, 296, 524, 537, 712, 730
TfiI	GAWTC	3 cut(s)	50, 254, 518
TscAI	CASTG	1 cut(s)	508
TseI	GCWGC	2 cut(s)	5, 371
TspDTI	ATGAA	5 cut(s)	42, 84, 177, 600, 761
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	2 cut(s)	133, 388
XapI	RAATTY	3 cut(s)	72, 172, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.