RLG00000031842

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003875
Physical Location & Seq
Reverse (-)
8648699 .. 8649415
717 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031842

Sequence Viewer

Length: 717 bp
ATGGAAGCAGAGCAAATCATGGAGCTCTTTGATTCTTACTGGTTTGAGCTTGAAATCCTCCAGAAACAACCATTTTCAGCAAACTCATCAAGATTTGAAGCTGCCCCAGTTCATGAAATTGAAGAACAACCATCAAAACCAGCGGTCTTACGCATTCCAAGCCTCCATACTAGATCCATGAGCGAAGATTTGAGCTCCAAAACGAGCTTTATGAATTGTGGTTCTCTCTCGCCAGACTCAGTCCTCCACAGACCAAAGCTCACCACCATTATTTCTGGAAAAGAAGCCACAGAATCAATGGAAGATATTCCGGTACAAAAACATGAAACAGAGTCATCGAAGAAAGCTAAAATTGAGAGAAGAAGGAAGAAGGGCGGGAGCAAGAGCTTGACAGACCTTGAGTTTGAGGAGCTAAAAGGGTTTATAGATTTGGGATTTGTTTTCTCTGAAGAAGACAAAGACTCAAACTTGGCTTCAATCATTCCAGGTCTCAAAAAATTGGGGAAGAAGGATGATGGTGAAGAAGACGAGGAAGCTTTCGAAGATGAGTCTGCGATTTCAAGGCCTTATCTTTCTGAAGCGTGGGAGGTGATGGAGAAGAGAAAGAAAGAGAAGAAGCCATTGATGGATTGGAGGTTTCCATCTTTGAGCAATGAAATTGACATGAAGGACAATCTCAAATGGTGGGCTCATACTGTTGCTTCTACAGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

239

Amino Acids

27.29

Weight (kDa)

5.14

Isoelectric Point (pI)

61.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 130 - 164 6.3e-06 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 143, 375
AclWI GGATC 1 cut(s) 168
AcuI CTGAAG 2 cut(s) 468, 597
AfaI GTAC 1 cut(s) 315
AgsI TTSAA 5 cut(s) 53, 98, 122, 477, 561
AjnI CCWGG 1 cut(s) 484
Alw21I GWGCWC 2 cut(s) 27, 197
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 563
ApeKI GCWGC 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
Asp700I GAANNNNTTC 1 cut(s) 306
AsuHPI GGTGA 3 cut(s) 253, 530, 601
AsuII TTCGAA 1 cut(s) 540
BanII GRGCYC 3 cut(s) 27, 197, 691
BbsI GAAGAC 2 cut(s) 459, 531
Bbv12I GWGCWC 2 cut(s) 27, 197
BbvI GCAGC 1 cut(s) 88
BccI CCATC 5 cut(s) 139, 509, 586, 619, 649
BciT130I CCWGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 705
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 486
BmrI ACTGGG 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 459, 531
BpmI CTGGAG 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 494
BsaWI WCCGGW 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 44, 107
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 1 cut(s) 486
BseGI GGATG 1 cut(s) 517
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 44, 107
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 565
BsiHKAI GWGCWC 2 cut(s) 27, 197
BsiSI CCGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 1 cut(s) 565
Bso31I GGTCTC 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 540
Bsp1286I GDGCHC 3 cut(s) 27, 197, 691
Bsp143I GATC 1 cut(s) 173
BspACI CCGC 2 cut(s) 143, 375
BspANI GGCC 1 cut(s) 565
BspCNI CTCAG 1 cut(s) 251
BspHI TCATGA 1 cut(s) 112
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 658
BsrI ACTGG 2 cut(s) 44, 107
BssMI GATC 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 697, 709
Bst6I CTCTTC 1 cut(s) 593
BstBI TTCGAA 1 cut(s) 540
BstDEI CTNAG 1 cut(s) 238
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 705
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 2 cut(s) 459, 531
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 565
BtsCI GGATG 1 cut(s) 517
CciI TCATGA 1 cut(s) 112
Csp6I GTAC 1 cut(s) 314
CviAII CATG 5 cut(s) 19, 113, 178, 323, 664
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 1 cut(s) 238
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
Ecl136II GAGCTC 2 cut(s) 25, 195
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 3 cut(s) 27, 197, 691
Eco31I GGTCTC 1 cut(s) 494
Eco53kI GAGCTC 2 cut(s) 25, 195
Eco57I CTGAAG 2 cut(s) 468, 597
EcoICRI GAGCTC 2 cut(s) 25, 195
EcoRII CCWGG 1 cut(s) 484
EcoT38I GRGCYC 3 cut(s) 27, 197, 691
FaeI CATG 5 cut(s) 22, 116, 181, 326, 667
FaiI YATR 9 cut(s) 20, 114, 168, 179, 212, 324, 425, 665, 693
FatI CATG 5 cut(s) 18, 112, 177, 322, 663
FauI CCCGC 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 524
FriOI GRGCYC 3 cut(s) 27, 197, 691
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 565
HapII CCGG 1 cut(s) 311
Hin1II CATG 5 cut(s) 22, 116, 181, 326, 667
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 6 cut(s) 32, 236, 293, 332, 461, 548
HpaII CCGG 1 cut(s) 311
HphI GGTGA 3 cut(s) 253, 530, 601
Hpy188I TCNGA 2 cut(s) 448, 577
Hpy188III TCNNGA 4 cut(s) 61, 90, 113, 276
HpyAV CCTTC 4 cut(s) 357, 364, 502, 661
HpyCH4III ACNGT 2 cut(s) 697, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 238
Hsp92II CATG 5 cut(s) 22, 116, 181, 326, 667
Kzo9I GATC 1 cut(s) 173
LmnI GCTCC 4 cut(s) 22, 200, 378, 409
LpnPI CCDG 9 cut(s) 25, 74, 120, 153, 246, 261, 324, 471, 498
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 1 cut(s) 171
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 3 cut(s) 27, 197, 691
MluCI AATT 5 cut(s) 117, 214, 351, 497, 657
MlyI GAGTC 4 cut(s) 230, 341, 455, 557
MnlI CCTC 7 cut(s) 68, 173, 254, 400, 523, 580, 627
MroXI GAANNNNTTC 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 1 cut(s) 173
NlaIII CATG 5 cut(s) 22, 116, 181, 326, 667
NspV TTCGAA 1 cut(s) 540
PagI TCATGA 1 cut(s) 112
PceI AGGCCT 1 cut(s) 565
PctI GAATGC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 32, 293
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 4 cut(s) 230, 340, 455, 556
PpsI GAGTC 4 cut(s) 230, 340, 455, 556
Psp124BI GAGCTC 2 cut(s) 27, 197
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PsuI RGATCY 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SacI GAGCTC 2 cut(s) 27, 197
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 173
SchI GAGTC 4 cut(s) 230, 341, 455, 557
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 3 cut(s) 27, 197, 691
SfcI CTRYAG 1 cut(s) 705
SfuI TTCGAA 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 5 cut(s) 117, 214, 351, 497, 657
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 2 cut(s) 143, 375
SspMI CTAG 1 cut(s) 171
SstI GAGCTC 2 cut(s) 27, 197
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 484
TaaI ACNGT 2 cut(s) 697, 709
TaqI TCGA 2 cut(s) 338, 540
TasI AATT 5 cut(s) 117, 214, 351, 497, 657
TfiI GAWTC 2 cut(s) 32, 293
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 6 cut(s) 101, 129, 227, 339, 669, 680
Tth111I GACNNNGTC 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 2 cut(s) 295, 627
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.