Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003875

Physical Location & Seq

Genomic Coordinates Reverse (-)

47489574 .. 47490356

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019155

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTGCAGACGAAGTACCTCTGCTCAACCTCTTTGATTCCTACTGGTTTGAACACGCAGTTTTCAGTTCCAAACCCCATGCAGCAGCAGCAGCAAACAACCCAAGTCTCCAACTGGATCAAGAAGATGAAATACTCCAAGAACCAAACCCTTCAGGATTGCCAGCCCTTATCGTGAGGTCACTAAGTGACCAATTCCTGGACACCAAGTCGTGCCTTTTCTCCGATTCGAGCTTCTCTCCCCACTCGGTTCTCCCCACTCGGTCACGAAAGCTTCAGACAATCCCCTCCGGCAAAGAAGTACTCATAGACTTCTCTAGAGAGAGTGTTCCTGAAAAACAAGTACTTGAGGTTGGGTCAGCACCACTGAAGGAAAGGGTGTTGCACAGTGAAAGATCAAAAACAAGGAAAAGATTAGGGAGCAGCAAGAGCTTGTCGGACCTCGAGTTTGACGAGCTTAAAGGGTTTATGGATCTGGGGTTTGTGTTCACTGAGGAAGACAACAGGGACTTGAAGCTGGTTTCGATAATTCCCGGCTTGCAAAGACTAGGAGTTACTGATGAAGGTGGGGAAGAAGATAGAGATGAAGAGAAGAGGATTGATGGAAGTCATCATCATTCACATGTTGTTTCCAGGCCTTATCTGTCTGAAGCTTGGGATGCTTTGGAATATCAAAGAAAAGAGGACCAGTTGATGAATTGGAGAGTTCCATCTGTTGTTGATGAAGACATGAAGCATCATCTCAAGTTCTGGGCTCATACAGTTGCATTAACCGTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

261

Amino Acids

29.52

Weight (kDa)

5.23

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42760
fragaria_vesca	FvH4_3g07380 FvH4_5g20610 FvH4_6g27710
malus_domestica	MD05G1027400.v1.1 MD05G1296400.v1.1 MD08G1224000.v1.1 MD10G1276400.v1.1
prunus_persica	Prupe.3G113400_v2.0.a1 Prupe.4G066000_v2.0.a1
pyrus_communis	pycom05g27480 pycom09g15340 pycom10g23080
rosa_chinensis	RchiOBHm_Chr2g0130861 RchiOBHm_Chr5g0011511
rosa_laevigata	RLG00000019155 RLG00000031842
rosa_multiflora	Rmu_sc0003629.1_g000018 Rmu_sc0009001.1_g000007 Rmu_sc0009975.1_g000027 Rmu_sc0009975.1_g000028
rosa_roxburghii	Rroxscaffold_1G00064940 Rroxscaffold_2G00113480
rosa_rugosa	Rorug02G0293800 Rorug04G0457500
rosa_samantha	Rh2AG345100 Rh2CG332000 Rh2DG371400 Rh5AG089300 Rh5BG084600 Rh5CG098300 Rh5DG084600
rosa_wichuraiana	Rw2G027450 Rw5G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	199
AclWI	GGATC	2 cut(s)	126, 480
AcuI	CTGAAG	4 cut(s)	138, 260, 389, 669
AdeI	CACNNNGTG	1 cut(s)	188
AfaI	GTAC	3 cut(s)	18, 303, 345
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	622
AgsI	TTSAA	2 cut(s)	53, 514
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	198, 632
AluBI	AGCT	6 cut(s)	234, 274, 432, 457, 517, 653
AluI	AGCT	6 cut(s)	234, 274, 432, 457, 517, 653
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	126, 480
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	6 cut(s)	5, 83, 86, 89, 92, 423
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspS9I	GGNCC	2 cut(s)	439, 685
AsuC2I	CCSGG	1 cut(s)	534
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	439, 685
BanII	GRGCYC	1 cut(s)	757
BarI	GAAGNNNNNNTAC	2 cut(s)	117, 149
BbsI	GAAGAC	2 cut(s)	504, 732
BbvI	GCAGC	5 cut(s)	95, 98, 101, 104, 435
BccI	CCATC	2 cut(s)	596, 718
BciT130I	CCWGG	2 cut(s)	200, 634
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	318, 548
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	6 cut(s)	6, 84, 87, 90, 93, 424
BlsI	GCNGC	6 cut(s)	7, 85, 88, 91, 94, 425
BmcAI	AGTACT	2 cut(s)	303, 345
Bme1390I	CCNGG	3 cut(s)	200, 534, 634
Bme18I	GGWCC	2 cut(s)	439, 685
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	439, 685
BmrFI	CCNGG	3 cut(s)	200, 534, 634
BmsI	GCATC	2 cut(s)	649, 745
BpiI	GAAGAC	2 cut(s)	504, 732
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpuEI	CTTGAG	2 cut(s)	368, 728
BpuMI	CCSGG	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	3 cut(s)	50, 120, 688
BseBI	CCWGG	2 cut(s)	200, 634
BseGI	GGATG	1 cut(s)	664
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	3 cut(s)	50, 120, 688
BseXI	GCAGC	5 cut(s)	95, 98, 101, 104, 435
BshFI	GGCC	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	291, 534
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	637
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	3 cut(s)	118, 395, 472
BspANI	GGCC	1 cut(s)	637
BspCNI	CTCAG	1 cut(s)	484
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	2 cut(s)	126, 480
BsrI	ACTGG	3 cut(s)	50, 120, 688
BssMI	GATC	3 cut(s)	118, 395, 472
Bst2UI	CCWGG	2 cut(s)	200, 634
Bst4CI	ACNGT	3 cut(s)	389, 763, 775
Bst6I	CTCTTC	2 cut(s)	582, 587
BstC8I	GCNNGC	2 cut(s)	165, 539
BstDEI	CTNAG	2 cut(s)	185, 492
BstF5I	GGATG	1 cut(s)	664
BstKTI	GATC	3 cut(s)	121, 398, 475
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	118, 395, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 92, 429, 659
BstNI	CCWGG	2 cut(s)	200, 634
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	3 cut(s)	198, 532, 632
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	5 cut(s)	95, 98, 101, 104, 435
BstV2I	GAAGAC	2 cut(s)	504, 732
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	664
BtsIMutI	CAGTG	3 cut(s)	365, 394, 489
Cac8I	GCNNGC	2 cut(s)	165, 539
Cfr13I	GGNCC	2 cut(s)	439, 685
Csp6I	GTAC	3 cut(s)	17, 302, 344
CviAII	CATG	3 cut(s)	80, 623, 730
CviQI	GTAC	3 cut(s)	17, 302, 344
DdeI	CTNAG	2 cut(s)	185, 492
DpnI	GATC	3 cut(s)	120, 397, 474
DpnII	GATC	3 cut(s)	118, 395, 472
DraIII	CACNNNGTG	1 cut(s)	188
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	582, 587
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	2 cut(s)	582, 587
Eco147I	AGGCCT	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	757
Eco47I	GGWCC	2 cut(s)	439, 685
Eco57I	CTGAAG	4 cut(s)	138, 260, 389, 669
Eco88I	CYCGRG	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	198, 632
EcoT38I	GRGCYC	1 cut(s)	757
FaeI	CATG	3 cut(s)	83, 626, 733
FaiI	YATR	6 cut(s)	81, 308, 470, 624, 731, 759
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	79, 622, 729
Fnu4HI	GCNGC	6 cut(s)	6, 84, 87, 90, 93, 424
FokI	GGATG	1 cut(s)	671
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	6 cut(s)	6, 84, 87, 90, 93, 424
FspBI	CTAG	2 cut(s)	318, 548
GluI	GCNGC	6 cut(s)	6, 84, 87, 90, 93, 424
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	2 cut(s)	291, 534
Hin1II	CATG	3 cut(s)	83, 626, 733
HindIII	AAGCTT	2 cut(s)	272, 651
HinfI	GANTC	2 cut(s)	38, 227
HpaII	CCGG	2 cut(s)	291, 534
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	4 cut(s)	226, 279, 439, 649
Hpy188III	TCNNGA	6 cut(s)	122, 156, 175, 267, 318, 332
Hpy8I	GTNNAC	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	162, 364, 557
HpyCH4III	ACNGT	3 cut(s)	389, 763, 775
HpyCH4V	TGCA	5 cut(s)	8, 83, 385, 541, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 92, 429, 659
HpyF3I	CTNAG	2 cut(s)	185, 492
Hsp92II	CATG	3 cut(s)	83, 626, 733
Kzo9I	GATC	3 cut(s)	118, 395, 472
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	5 cut(s)	95, 98, 101, 104, 435
LweI	GCATC	2 cut(s)	649, 745
MaeI	CTAG	2 cut(s)	318, 548
MaeIII	GTNAC	4 cut(s)	180, 188, 264, 553
MalI	GATC	3 cut(s)	120, 397, 474
MboI	GATC	3 cut(s)	118, 395, 472
MboII	GAAGA	7 cut(s)	137, 509, 584, 587, 599, 604, 737
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	757
MluCI	AATT	3 cut(s)	194, 528, 697
MmeI	TCCRAC	2 cut(s)	136, 417
MnlI	CCTC	9 cut(s)	30, 41, 171, 298, 343, 452, 487, 588, 676
MseI	TTAA	2 cut(s)	459, 770
MslI	CAYNNNNRTG	1 cut(s)	621
MspI	CCGG	2 cut(s)	291, 534
MspR9I	CCNGG	3 cut(s)	200, 534, 634
MvaI	CCWGG	2 cut(s)	200, 634
MwoI	GCNNNNNNNGC	4 cut(s)	89, 92, 429, 659
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	3 cut(s)	118, 395, 472
NlaIII	CATG	3 cut(s)	83, 626, 733
NmuCI	GTSAC	3 cut(s)	180, 188, 264
NspI	RCATGY	1 cut(s)	626
PaeR7I	CTCGAG	1 cut(s)	443
PceI	AGGCCT	1 cut(s)	637
PciI	ACATGT	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	38, 227
PflMI	CCANNNNNTGG	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	6 cut(s)	7, 85, 88, 91, 94, 425
PscI	ACATGT	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	198, 632
PspGI	CCWGG	2 cut(s)	198, 632
PspPI	GGNCC	2 cut(s)	439, 685
PspXI	VCTCGAGB	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	3 cut(s)	18, 303, 345
RsaNI	GTAC	3 cut(s)	17, 302, 344
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	459, 770
SatI	GCNGC	6 cut(s)	6, 84, 87, 90, 93, 424
Sau3AI	GATC	3 cut(s)	118, 395, 472
Sau96I	GGNCC	2 cut(s)	439, 685
ScaI	AGTACT	2 cut(s)	303, 345
ScrFI	CCNGG	3 cut(s)	200, 534, 634
SduI	GDGCHC	1 cut(s)	757
SfaNI	GCATC	2 cut(s)	649, 745
SfcI	CTRYAG	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	2 cut(s)	439, 685
SlaI	CTCGAG	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	3 cut(s)	347, 443, 743
SmoI	CTYRAG	3 cut(s)	347, 443, 743
Sse9I	AATT	3 cut(s)	194, 528, 697
SseBI	AGGCCT	1 cut(s)	637
SspMI	CTAG	2 cut(s)	318, 548
StuI	AGGCCT	1 cut(s)	637
StyD4I	CCNGG	3 cut(s)	198, 532, 632
TaaI	ACNGT	3 cut(s)	389, 763, 775
TaqI	TCGA	3 cut(s)	230, 444, 524
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	194, 528, 697
TatI	WGTACW	2 cut(s)	301, 343
TfiI	GAWTC	2 cut(s)	38, 227
Tru1I	TTAA	2 cut(s)	459, 770
Tru9I	TTAA	2 cut(s)	459, 770
TscAI	CASTG	3 cut(s)	372, 394, 496
TseFI	GTSAC	3 cut(s)	180, 188, 264
TseI	GCWGC	6 cut(s)	5, 83, 86, 89, 92, 423
Tsp45I	GTSAC	3 cut(s)	180, 188, 264
TspDTI	ATGAA	6 cut(s)	144, 576, 600, 710, 738, 746
TspRI	CASTG	3 cut(s)	372, 394, 496
Van91I	CCANNNNNTGG	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	439, 685
XbaI	TCTAGA	1 cut(s)	317
XceI	RCATGY	1 cut(s)	626
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	2 cut(s)	318, 548
ZrmI	AGTACT	2 cut(s)	303, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.