Rw2G027450

Protein of unknown function (DUF1685)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
43150531 .. 43151309
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027450.1

Sequence Viewer

Length: 741 bp
ATGGCTGCAGATGAAGTACCTTTGCTCAACCTCTTTGATTCCTACTGGTTTGAACACGCAGTTTTCAGTTCCAAACCCCATGCAGCAGCAGCAAACAACCCAAGTTTCCAACTGGACCAAGAAGATCAAATACTCCAAGAACCGAACCCTTCAGGATTGCCAACTCTTATCGTGAGGTCACTAAGTGACCAATTCTTGGACACCAAGTCGAGCCTTTTCTCCGATTCGAGCTTCTCTCCCCACTCGGTTCTTCCCACTCGGTCACGAAAGCTTCAGACAATCCCCTCCGGCAAAGAAGTACTCATAGACTTCTCTAGAGAGAGTGTTCCTGAAAAACAAGTACTTGAGGTTGGGTCAGCACCACTGAAGAAAAGGGTGTTGCACAGTGAAAGATCAAAAACAAGGAAAAGATTAGGTAGCAGCAAGAGCTTGTCGGACCTCGAGTTTGACGAGCTTAAAGGGTTTATGGATCTGGGGTTTGTGTTCACTGAGGAAGACAACAAGGACTCGAAGCTGGTTTCGATAATTCCCGGCTTGCAAAGACTAGGAAAGAGGATTGATGGAAGTCATCATCATTCACATGTTGTTTCCAGGCCTTATCTGTCTGAAGCTTGGGATGCTTTGGAATATCAAAGAAAAGAGGACCAGTTGATGAATTGGAGAGTTCCATCTGCTGTTGATAAAGAGATGAAGCATCATCTCAAGTTCTGGGCTCATACAGTTGCATCAACCGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

246

Amino Acids

27.94

Weight (kDa)

6.6

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 196
AclWI GGATC 1 cut(s) 477
AcuI CTGAAG 4 cut(s) 135, 257, 386, 627
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 3 cut(s) 18, 300, 342
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 1 cut(s) 53
AhdI GACNNNNNGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 590
AluBI AGCT 6 cut(s) 231, 271, 429, 454, 514, 611
AluI AGCT 6 cut(s) 231, 271, 429, 454, 514, 611
AlwI GGATC 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 1 cut(s) 593
ApeKI GCWGC 5 cut(s) 5, 83, 86, 89, 420
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AspS9I GGNCC 3 cut(s) 115, 436, 643
AsuC2I CCSGG 1 cut(s) 531
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 3 cut(s) 115, 436, 643
BanII GRGCYC 1 cut(s) 715
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BbsI GAAGAC 1 cut(s) 501
BbvI GCAGC 4 cut(s) 95, 98, 101, 432
BccI CCATC 2 cut(s) 554, 676
BciT130I CCWGG 1 cut(s) 592
BcnI CCSGG 1 cut(s) 531
BfaI CTAG 2 cut(s) 315, 545
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 5 cut(s) 6, 84, 87, 90, 421
BlsI GCNGC 5 cut(s) 7, 85, 88, 91, 422
BmcAI AGTACT 2 cut(s) 300, 342
Bme1390I CCNGG 2 cut(s) 531, 592
Bme18I GGWCC 3 cut(s) 115, 436, 643
BmeRI GACNNNNNGTC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 3 cut(s) 115, 436, 643
BmrFI CCNGG 2 cut(s) 531, 592
BmsI GCATC 3 cut(s) 607, 703, 734
BpiI GAAGAC 1 cut(s) 501
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpuEI CTTGAG 2 cut(s) 365, 686
BpuMI CCSGG 1 cut(s) 531
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 3 cut(s) 50, 117, 646
BseBI CCWGG 1 cut(s) 592
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 3 cut(s) 50, 117, 646
BseXI GCAGC 4 cut(s) 95, 98, 101, 432
BshFI GGCC 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 2 cut(s) 288, 531
BslI CCNNNNNNNGG 1 cut(s) 196
BsnI GGCC 1 cut(s) 595
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 715
Bsp143I GATC 3 cut(s) 124, 392, 469
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 477
BsrI ACTGG 3 cut(s) 50, 117, 646
BssMI GATC 3 cut(s) 124, 392, 469
Bst2UI CCWGG 1 cut(s) 592
Bst4CI ACNGT 3 cut(s) 386, 721, 733
BstC8I GCNNGC 1 cut(s) 536
BstDEI CTNAG 2 cut(s) 182, 489
BstF5I GGATG 1 cut(s) 622
BstKTI GATC 3 cut(s) 127, 395, 472
BstMBI GATC 3 cut(s) 124, 392, 469
BstMWI GCNNNNNNNGC 3 cut(s) 89, 426, 617
BstNI CCWGG 1 cut(s) 592
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 529, 590
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 4 cut(s) 95, 98, 101, 432
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 1 cut(s) 595
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 3 cut(s) 362, 391, 486
Cac8I GCNNGC 1 cut(s) 536
Cfr13I GGNCC 3 cut(s) 115, 436, 643
Csp6I GTAC 3 cut(s) 17, 299, 341
CviAII CATG 2 cut(s) 80, 581
CviQI GTAC 3 cut(s) 17, 299, 341
DdeI CTNAG 2 cut(s) 182, 489
DpnI GATC 3 cut(s) 126, 394, 471
DpnII GATC 3 cut(s) 124, 392, 469
DraIII CACNNNGTG 1 cut(s) 185
DriI GACNNNNNGTC 1 cut(s) 205
Eam1105I GACNNNNNGTC 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 715
Eco47I GGWCC 3 cut(s) 115, 436, 643
Eco57I CTGAAG 4 cut(s) 135, 257, 386, 627
Eco88I CYCGRG 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 590
EcoT38I GRGCYC 1 cut(s) 715
FaeI CATG 2 cut(s) 83, 584
FaiI YATR 5 cut(s) 81, 305, 467, 582, 717
FatI CATG 2 cut(s) 79, 580
Fnu4HI GCNGC 5 cut(s) 6, 84, 87, 90, 421
FokI GGATG 1 cut(s) 629
FriOI GRGCYC 1 cut(s) 715
Fsp4HI GCNGC 5 cut(s) 6, 84, 87, 90, 421
FspBI CTAG 2 cut(s) 315, 545
GluI GCNGC 5 cut(s) 6, 84, 87, 90, 421
HaeIII GGCC 1 cut(s) 595
HapII CCGG 2 cut(s) 288, 531
Hin1II CATG 2 cut(s) 83, 584
HindIII AAGCTT 2 cut(s) 269, 609
HinfI GANTC 3 cut(s) 38, 224, 506
HpaII CCGG 2 cut(s) 288, 531
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 4 cut(s) 223, 276, 436, 607
Hpy188III TCNNGA 5 cut(s) 153, 172, 264, 315, 329
Hpy8I GTNNAC 1 cut(s) 486
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 3 cut(s) 386, 721, 733
HpyCH4V TGCA 5 cut(s) 8, 83, 382, 538, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 426, 617
HpyF3I CTNAG 2 cut(s) 182, 489
Hsp92II CATG 2 cut(s) 83, 584
Kzo9I GATC 3 cut(s) 124, 392, 469
Lsp1109I GCAGC 4 cut(s) 95, 98, 101, 432
LweI GCATC 3 cut(s) 607, 703, 734
MaeI CTAG 2 cut(s) 315, 545
MaeIII GTNAC 3 cut(s) 177, 185, 261
MalI GATC 3 cut(s) 126, 394, 471
MboI GATC 3 cut(s) 124, 392, 469
MboII GAAGA 4 cut(s) 134, 242, 379, 506
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 715
MluCI AATT 3 cut(s) 191, 525, 655
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 2 cut(s) 133, 414
MnlI CCTC 8 cut(s) 41, 168, 295, 340, 449, 484, 546, 634
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 579
MspI CCGG 2 cut(s) 288, 531
MspR9I CCNGG 2 cut(s) 531, 592
MvaI CCWGG 1 cut(s) 592
MwoI GCNNNNNNNGC 3 cut(s) 89, 426, 617
NciI CCSGG 1 cut(s) 531
NdeII GATC 3 cut(s) 124, 392, 469
NlaIII CATG 2 cut(s) 83, 584
NmuCI GTSAC 3 cut(s) 177, 185, 261
NspI RCATGY 1 cut(s) 584
PaeR7I CTCGAG 1 cut(s) 440
PceI AGGCCT 1 cut(s) 595
PciI ACATGT 1 cut(s) 580
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PfeI GAWTC 2 cut(s) 38, 224
PflMI CCANNNNNTGG 1 cut(s) 196
PkrI GCNGC 5 cut(s) 7, 85, 88, 91, 422
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PscI ACATGT 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 590
PspGI CCWGG 1 cut(s) 590
PspPI GGNCC 3 cut(s) 115, 436, 643
PspXI VCTCGAGB 1 cut(s) 440
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 3 cut(s) 18, 300, 342
RsaNI GTAC 3 cut(s) 17, 299, 341
RseI CAYNNNNRTG 1 cut(s) 579
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 5 cut(s) 6, 84, 87, 90, 421
Sau3AI GATC 3 cut(s) 124, 392, 469
Sau96I GGNCC 3 cut(s) 115, 436, 643
ScaI AGTACT 2 cut(s) 300, 342
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 531, 592
SduI GDGCHC 1 cut(s) 715
SfaNI GCATC 3 cut(s) 607, 703, 734
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 440
SinI GGWCC 3 cut(s) 115, 436, 643
SlaI CTCGAG 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 3 cut(s) 344, 440, 701
SmoI CTYRAG 3 cut(s) 344, 440, 701
Sse9I AATT 3 cut(s) 191, 525, 655
SseBI AGGCCT 1 cut(s) 595
SspMI CTAG 2 cut(s) 315, 545
StuI AGGCCT 1 cut(s) 595
StyD4I CCNGG 2 cut(s) 529, 590
TaaI ACNGT 3 cut(s) 386, 721, 733
TaqI TCGA 5 cut(s) 209, 227, 441, 509, 521
TaqII GACCGA 1 cut(s) 249
TasI AATT 3 cut(s) 191, 525, 655
TatI WGTACW 2 cut(s) 298, 340
TfiI GAWTC 2 cut(s) 38, 224
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 3 cut(s) 369, 391, 493
TseFI GTSAC 3 cut(s) 177, 185, 261
TseI GCWGC 5 cut(s) 5, 83, 86, 89, 420
Tsp45I GTSAC 3 cut(s) 177, 185, 261
TspDTI ATGAA 3 cut(s) 27, 668, 704
TspRI CASTG 3 cut(s) 369, 391, 493
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 3 cut(s) 115, 436, 643
XbaI TCTAGA 1 cut(s) 314
XceI RCATGY 1 cut(s) 584
XhoI CTCGAG 1 cut(s) 440
XspI CTAG 2 cut(s) 315, 545
ZrmI AGTACT 2 cut(s) 300, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.