Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009975.1

Orthogroup ID

OG0003875

Physical Location & Seq

Genomic Coordinates Reverse (-)

129609 .. 130325

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009975.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggaagcagggcaaatcatggagctctttgattcttactggtttgagcttgaaatcctcaagaaacaaccattttcagcaaagtcatcaagatttgaagctgccccagttcatgaaattgaagaacaaccatcaaaaccagaggtcttacgcattccaagcctccatactagatccatgagcgaagatttgagctccaaaatgagctttatgaattgcggttctctctcgccagactcagtcctccacagaccaaagctcaccaccattatttctggaaaagaagccacagaatcaatggaagatattccagtacaaaaacatgaaacagagtcatcgaagaaggctaaaattgagagaagaaggaagacgggcgggagcaagagcttgacagaccttcagtttgaggagctaaaagggtttatggatttgggatttgttttctcagaagaagacaaagactcaaacttggcttcaatcattcctggtctgaaaaaattggggaagaaagatgatggtgaagtagacgaggaagcttttgatgatgagtctgcgatttcaaggccttatctttctgaagcgtgggaggtgatggagaagagaaggaaagagaagaagccattgatggattggaggtttccatctttgagcaatgaaattgacatgaaggacaatctcaaatggtgggctcatactgttgcttctacagtcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

238

Amino Acids

27.29

Weight (kDa)

5.35

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42760
fragaria_vesca	FvH4_3g07380 FvH4_5g20610 FvH4_6g27710
malus_domestica	MD05G1027400.v1.1 MD05G1296400.v1.1 MD08G1224000.v1.1 MD10G1276400.v1.1
prunus_persica	Prupe.3G113400_v2.0.a1 Prupe.4G066000_v2.0.a1
pyrus_communis	pycom05g27480 pycom09g15340 pycom10g23080
rosa_chinensis	RchiOBHm_Chr2g0130861 RchiOBHm_Chr5g0011511
rosa_laevigata	RLG00000019155 RLG00000031842
rosa_multiflora	Rmu_sc0003629.1_g000018 Rmu_sc0009001.1_g000007 Rmu_sc0009975.1_g000027 Rmu_sc0009975.1_g000028
rosa_roxburghii	Rroxscaffold_1G00064940 Rroxscaffold_2G00113480
rosa_rugosa	Rorug02G0293800 Rorug04G0457500
rosa_samantha	Rh2AG345100 Rh2CG332000 Rh2DG371400 Rh5AG089300 Rh5BG084600 Rh5CG098300 Rh5DG084600
rosa_wichuraiana	Rw2G027450 Rw5G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	2 cut(s)	219, 375
AclWI	GGATC	1 cut(s)	168
AcuI	CTGAAG	2 cut(s)	383, 597
AfaI	GTAC	1 cut(s)	315
AgsI	TTSAA	5 cut(s)	53, 98, 122, 477, 561
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	9 cut(s)	25, 49, 101, 195, 207, 259, 387, 412, 536
AluI	AGCT	9 cut(s)	25, 49, 101, 195, 207, 259, 387, 412, 536
Alw21I	GWGCWC	2 cut(s)	27, 197
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
Asp700I	GAANNNNTTC	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	253, 530, 601
BanII	GRGCYC	3 cut(s)	27, 197, 691
BbsI	GAAGAC	2 cut(s)	374, 459
Bbv12I	GWGCWC	2 cut(s)	27, 197
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	5 cut(s)	139, 509, 586, 619, 649
BciT130I	CCWGG	1 cut(s)	486
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	705
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	486
BmrI	ACTGGG	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	101
BpiI	GAAGAC	2 cut(s)	374, 459
BpuEI	CTTGAG	1 cut(s)	44
Bse1I	ACTGG	3 cut(s)	44, 107, 311
Bse3DI	GCAATG	1 cut(s)	658
BseBI	CCWGG	1 cut(s)	486
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	2 cut(s)	252, 459
BseNI	ACTGG	3 cut(s)	44, 107, 311
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	1 cut(s)	565
BsiHKAI	GWGCWC	2 cut(s)	27, 197
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	565
Bsp1286I	GDGCHC	3 cut(s)	27, 197, 691
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	2 cut(s)	219, 375
BspANI	GGCC	1 cut(s)	565
BspCNI	CTCAG	2 cut(s)	251, 458
BspHI	TCATGA	1 cut(s)	112
BspPI	GGATC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	658
BsrI	ACTGG	3 cut(s)	44, 107, 311
BssMI	GATC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	697, 709
Bst6I	CTCTTC	1 cut(s)	593
BstDEI	CTNAG	2 cut(s)	238, 445
BstKTI	GATC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	2 cut(s)	374, 459
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	565
CciI	TCATGA	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	5 cut(s)	19, 113, 178, 323, 664
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	2 cut(s)	238, 445
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Ecl136II	GAGCTC	2 cut(s)	25, 195
Eco147I	AGGCCT	1 cut(s)	565
Eco24I	GRGCYC	3 cut(s)	27, 197, 691
Eco53kI	GAGCTC	2 cut(s)	25, 195
Eco57I	CTGAAG	2 cut(s)	383, 597
EcoICRI	GAGCTC	2 cut(s)	25, 195
EcoRII	CCWGG	1 cut(s)	484
EcoT38I	GRGCYC	3 cut(s)	27, 197, 691
FaeI	CATG	5 cut(s)	22, 116, 181, 326, 667
FaiI	YATR	9 cut(s)	20, 114, 168, 179, 212, 324, 425, 665, 693
FatI	CATG	5 cut(s)	18, 112, 177, 322, 663
FauI	CCCGC	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	102
FriOI	GRGCYC	3 cut(s)	27, 197, 691
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	565
Hin1II	CATG	5 cut(s)	22, 116, 181, 326, 667
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	6 cut(s)	32, 236, 293, 332, 461, 548
HphI	GGTGA	3 cut(s)	253, 530, 601
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	4 cut(s)	448, 492, 577, 713
Hpy188III	TCNNGA	4 cut(s)	61, 90, 113, 276
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	5 cut(s)	337, 357, 407, 597, 661
HpyCH4III	ACNGT	2 cut(s)	697, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	2 cut(s)	238, 445
Hsp92II	CATG	5 cut(s)	22, 116, 181, 326, 667
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	4 cut(s)	22, 200, 378, 409
LpnPI	CCDG	8 cut(s)	25, 120, 153, 246, 261, 324, 471, 498
Lsp1109I	GCAGC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	171
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	3 cut(s)	27, 197, 691
MluCI	AATT	5 cut(s)	117, 214, 351, 497, 657
MlyI	GAGTC	4 cut(s)	230, 341, 455, 557
MnlI	CCTC	8 cut(s)	68, 136, 173, 254, 400, 523, 580, 627
MroXI	GAANNNNTTC	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	5 cut(s)	22, 116, 181, 326, 667
PagI	TCATGA	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	565
PctI	GAATGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	32, 293
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	4 cut(s)	230, 340, 455, 556
PpsI	GAGTC	4 cut(s)	230, 340, 455, 556
Psp124BI	GAGCTC	2 cut(s)	27, 197
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SacI	GAGCTC	2 cut(s)	27, 197
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	173
SchI	GAGTC	4 cut(s)	230, 341, 455, 557
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	3 cut(s)	27, 197, 691
SfcI	CTRYAG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	5 cut(s)	117, 214, 351, 497, 657
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	2 cut(s)	219, 375
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	2 cut(s)	27, 197
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	697, 709
TaqI	TCGA	1 cut(s)	338
TasI	AATT	5 cut(s)	117, 214, 351, 497, 657
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	32, 293
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	6 cut(s)	101, 129, 227, 339, 669, 680
Tth111I	GACNNNGTC	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	2 cut(s)	295, 627
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.