Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003875

Physical Location & Seq

Genomic Coordinates Forward (+)

15198368 .. 15199156

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCAAAACAAAATGGCTGCCGAAGAAAAAGAAGAAGAAGCACTTCTCAACCTCTTTAATTCGTACTGGTTTGGGCATGAAATTTTGAGCCAGAAATCACCTTCACAACCCCAACAAGCAACAAATAACCCAACTCTCCAAGTGGACGAATCAGCCCAAGAAGAAACCCTAGAGTTACCAATCCTAAAGCTAAGGTCTCTAAGTGACCAGTTTTTAAACACGCCCAGCTTTTCTCCGAGTAGCACACCGAAACTGCAAACAATTTTTTCCGGTGAACAAGTCACAAACTTCTCCAAAAACGATGAACTGCTGGCTCATCTGACAAAAAACAGCCGGGTAAGTAGCAGCAGCAGTGGCAGCAGTGGCGGCAGCAGCAGCAGCAGGAGGAGTAGTGAAAGAAAAAGAAGGAAAAGAGTACTAGGGCCAAGTAAGAGCATGTCAGAGCTAGAGTTTGAGGAACTCAAAGGTTTTATGGATTTGGGGTTTGTCTTCACTGAGGAAGACAAGGATTCTTCAAGACTGGTTTCCATAATTCCCGGCTTGCAAAGACTAGCAAGTTGTGAAGAAGAAGATGTTAGAGATTATCAGAAGGAGGAGGAGGAGGAGGAGGATCATGGGGTGGTTTCAAGGCGGCCTTATCTGTCCGAGGCTTGGGATGTTTTGGATCAAAGAAAGAAAGAGAACCAAATGTTGATGAAGTGGAGAATACCTGCTGCTACTAATTTAGGTAAGCACATGAAGCATCATCTCAGGTTCTGGGCTCATTCAGTTGCATCATCTGTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

263

Amino Acids

29.88

Weight (kDa)

5.75

Isoelectric Point (pI)

74.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42760
fragaria_vesca	FvH4_3g07380 FvH4_5g20610 FvH4_6g27710
malus_domestica	MD05G1027400.v1.1 MD05G1296400.v1.1 MD08G1224000.v1.1 MD10G1276400.v1.1
prunus_persica	Prupe.3G113400_v2.0.a1 Prupe.4G066000_v2.0.a1
pyrus_communis	pycom05g27480 pycom09g15340 pycom10g23080
rosa_chinensis	RchiOBHm_Chr2g0130861 RchiOBHm_Chr5g0011511
rosa_laevigata	RLG00000019155 RLG00000031842
rosa_multiflora	Rmu_sc0003629.1_g000018 Rmu_sc0009001.1_g000007 Rmu_sc0009975.1_g000027 Rmu_sc0009975.1_g000028
rosa_roxburghii	Rroxscaffold_1G00064940 Rroxscaffold_2G00113480
rosa_rugosa	Rorug02G0293800 Rorug04G0457500
rosa_samantha	Rh2AG345100 Rh2CG332000 Rh2DG371400 Rh5AG089300 Rh5BG084600 Rh5CG098300 Rh5DG084600
rosa_wichuraiana	Rw2G027450 Rw5G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	718
AciI	CCGC	2 cut(s)	366, 631
AclWI	GGATC	2 cut(s)	618, 672
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	2 cut(s)	65, 417
AfiI	CCNNNNNNNGG	1 cut(s)	651
AgsI	TTSAA	2 cut(s)	516, 627
AluBI	AGCT	3 cut(s)	190, 228, 445
AluI	AGCT	3 cut(s)	190, 228, 445
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	618, 672
AlwNI	CAGNNNCTG	1 cut(s)	756
AoxI	GGCC	2 cut(s)	422, 632
ApeKI	GCWGC	9 cut(s)	17, 345, 348, 357, 369, 372, 375, 378, 713
ApoI	RAATTY	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	2 cut(s)	335, 537
AsuHPI	GGTGA	2 cut(s)	90, 284
BanII	GRGCYC	1 cut(s)	763
BbsI	GAAGAC	2 cut(s)	481, 507
BbvI	GCAGC	9 cut(s)	4, 357, 360, 369, 381, 384, 387, 390, 700
BcnI	CCSGG	2 cut(s)	335, 537
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	4 cut(s)	170, 419, 446, 551
BfuAI	ACCTGC	1 cut(s)	718
BmcAI	AGTACT	1 cut(s)	417
Bme1390I	CCNGG	2 cut(s)	335, 537
BmgT120I	GGNCC	1 cut(s)	422
BmrFI	CCNGG	2 cut(s)	335, 537
BmsI	GCATC	2 cut(s)	751, 782
BpiI	GAAGAC	2 cut(s)	481, 507
Bpu10I	CCTNAGC	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	335, 537
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	645
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse1I	ACTGG	3 cut(s)	71, 208, 525
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMII	CTCAG	2 cut(s)	486, 763
BseNI	ACTGG	3 cut(s)	71, 208, 525
BseRI	GAGGAG	6 cut(s)	400, 608, 611, 614, 617, 620
BseXI	GCAGC	9 cut(s)	4, 357, 360, 369, 381, 384, 387, 390, 700
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	2 cut(s)	424, 634
BsiSI	CCGG	3 cut(s)	270, 334, 537
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	424, 634
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp143I	GATC	2 cut(s)	610, 664
BspACI	CCGC	2 cut(s)	366, 631
BspANI	GGCC	2 cut(s)	424, 634
BspCNI	CTCAG	2 cut(s)	487, 762
BspMI	ACCTGC	1 cut(s)	718
BspPI	GGATC	2 cut(s)	618, 672
BspTNI	GGTCTC	1 cut(s)	201
BsrI	ACTGG	3 cut(s)	71, 208, 525
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	2 cut(s)	610, 664
BstC8I	GCNNGC	2 cut(s)	312, 542
BstDEI	CTNAG	4 cut(s)	191, 200, 495, 749
BstF5I	GGATG	1 cut(s)	661
BstKTI	GATC	2 cut(s)	613, 667
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	610, 664
BstMWI	GCNNNNNNNGC	8 cut(s)	354, 357, 363, 366, 372, 375, 378, 739
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	333, 535
BstV1I	GCAGC	9 cut(s)	4, 357, 360, 369, 381, 384, 387, 390, 700
BstV2I	GAAGAC	2 cut(s)	481, 507
BsuRI	GGCC	2 cut(s)	424, 634
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	2 cut(s)	358, 367
BtsIMutI	CAGTG	3 cut(s)	358, 367, 492
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	312, 542
CaiI	CAGNNNCTG	1 cut(s)	756
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	64, 416
CviAII	CATG	4 cut(s)	77, 436, 614, 736
CviQI	GTAC	2 cut(s)	64, 416
DdeI	CTNAG	4 cut(s)	191, 200, 495, 749
DpnI	GATC	2 cut(s)	612, 666
DpnII	GATC	2 cut(s)	610, 664
DraI	TTTAAA	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	763
Eco31I	GGTCTC	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	763
FaeI	CATG	4 cut(s)	80, 439, 617, 739
FaiI	YATR	6 cut(s)	78, 437, 473, 530, 615, 737
FalI	AAGNNNNNCTT	4 cut(s)	27, 59, 619, 651
FatI	CATG	4 cut(s)	76, 435, 613, 735
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	1 cut(s)	763
FspBI	CTAG	4 cut(s)	170, 419, 446, 551
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	424, 634
HapII	CCGG	3 cut(s)	270, 334, 537
Hin1II	CATG	4 cut(s)	80, 439, 617, 739
HinfI	GANTC	2 cut(s)	149, 509
HpaII	CCGG	3 cut(s)	270, 334, 537
HphI	GGTGA	2 cut(s)	90, 284
Hpy166II	GTNNAC	2 cut(s)	145, 275
Hpy188I	TCNGA	5 cut(s)	237, 321, 442, 588, 646
Hpy188III	TCNNGA	1 cut(s)	516
Hpy8I	GTNNAC	2 cut(s)	145, 275
HpyAV	CCTTC	3 cut(s)	111, 399, 583
HpyCH4V	TGCA	4 cut(s)	4, 256, 544, 773
HpyF10VI	GCNNNNNNNGC	8 cut(s)	354, 357, 363, 366, 372, 375, 378, 739
HpyF3I	CTNAG	4 cut(s)	191, 200, 495, 749
Hsp92II	CATG	4 cut(s)	80, 439, 617, 739
Kzo9I	GATC	2 cut(s)	610, 664
Lsp1109I	GCAGC	9 cut(s)	4, 357, 360, 369, 381, 384, 387, 390, 700
LweI	GCATC	2 cut(s)	751, 782
MaeI	CTAG	4 cut(s)	170, 419, 446, 551
MaeIII	GTNAC	3 cut(s)	174, 203, 280
MalI	GATC	2 cut(s)	612, 666
MboI	GATC	2 cut(s)	610, 664
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	5 cut(s)	58, 81, 261, 531, 721
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	2 cut(s)	57, 215
MspI	CCGG	3 cut(s)	270, 334, 537
MspR9I	CCNGG	2 cut(s)	335, 537
MwoI	GCNNNNNNNGC	8 cut(s)	354, 357, 363, 366, 372, 375, 378, 739
NciI	CCSGG	2 cut(s)	335, 537
NdeII	GATC	2 cut(s)	610, 664
NlaIII	CATG	4 cut(s)	80, 439, 617, 739
NmuCI	GTSAC	2 cut(s)	203, 280
NspI	RCATGY	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	149, 509
PspFI	CCCAGC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	756
RsaI	GTAC	2 cut(s)	65, 417
RsaNI	GTAC	2 cut(s)	64, 416
SaqAI	TTAA	2 cut(s)	57, 215
Sau3AI	GATC	2 cut(s)	610, 664
Sau96I	GGNCC	1 cut(s)	422
ScaI	AGTACT	1 cut(s)	417
ScrFI	CCNGG	2 cut(s)	335, 537
SduI	GDGCHC	1 cut(s)	763
SfaNI	GCATC	2 cut(s)	751, 782
Sse9I	AATT	5 cut(s)	58, 81, 261, 531, 721
SsiI	CCGC	2 cut(s)	366, 631
SspMI	CTAG	4 cut(s)	170, 419, 446, 551
StyD4I	CCNGG	2 cut(s)	333, 535
TasI	AATT	5 cut(s)	58, 81, 261, 531, 721
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	2 cut(s)	369, 634
TfiI	GAWTC	2 cut(s)	149, 509
Tru1I	TTAA	2 cut(s)	57, 215
Tru9I	TTAA	2 cut(s)	57, 215
TscAI	CASTG	3 cut(s)	358, 367, 499
TseFI	GTSAC	2 cut(s)	203, 280
TseI	GCWGC	9 cut(s)	17, 345, 348, 357, 369, 372, 375, 378, 713
Tsp45I	GTSAC	2 cut(s)	203, 280
TspDTI	ATGAA	4 cut(s)	93, 318, 710, 752
TspRI	CASTG	3 cut(s)	358, 367, 499
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	1 cut(s)	439
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	4 cut(s)	170, 419, 446, 551
ZrmI	AGTACT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.