FvH4_3g07380

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003875
Physical Location & Seq
Forward (+)
4387861 .. 4389267
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07380.t1

Sequence Viewer

Length: 714 bp
ATGGAAGCAGAGCAAATCATGGAGCTCTTTGATTCTTACTGGTTTGAGCTTGAAATCCTCAAGAAACAATCATTTCCAGCAAGCTCATCAAGATTGGAAGAAGAAATAGTTCATGAAAATGAAGAACAACCATCAAAACCAGAGGTCTTACGCATTCCAAGCTTCCCTATTAGATCCATGAGCGAAGATTTGAGCTCCAAAACGAGCTTTATGAACATCGATTCTCTCTCGCCAGACTCAGTCCTCCACAGACCGAAGCTTAGCACCATTGTTTCTGGCAAAGAAGCCCCAGAATCAATGAAAGATACTCCCGTATTACATAAACATGAAGCGAAGTCATCAAAGATTGAGAGAAGAAGAAAGAAGAGCGGGAGCAAGAGCTTGACAGACCTTCAGTTTGAGGAGCTAAAAGGGTTTATGGATCTGGGATTCGTCTTCTCAGAAGAAGACAAAGACTCAAACTTGGCTTCAATCATTCCTGGTCTGAAAAAATTTGGGAAGAATAAGGATGATGGTGCCGAAGACGATGAAGCTTTCAATGATGAGTCTGCGATTTCAAGGCCTTATCTTTCTGAAGCGTGGGAGGTGATGGAGAAGAGAAAGAAAGATAAGAAACCATTGACGGATTGGAGGTTTCCTTCTATGAGCAATGAATTGGACATGAAGGACAATCTCAGATGGTGGGCTCATACTGTTGCTTCTACGGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

238

Amino Acids

27.32

Weight (kDa)

5.26

Isoelectric Point (pI)

66.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 128 - 162 8.1e-06 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 515
AccBSI CCGCTC 1 cut(s) 369
AciI CCGC 1 cut(s) 369
AclWI GGATC 2 cut(s) 168, 429
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 2 cut(s) 377, 594
AgsI TTSAA 4 cut(s) 53, 471, 538, 558
AjnI CCWGG 1 cut(s) 478
Alw21I GWGCWC 2 cut(s) 27, 197
AlwI GGATC 2 cut(s) 168, 429
AoxI GGCC 1 cut(s) 560
ApoI RAATTY 1 cut(s) 491
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 598
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BanI GGYRCC 1 cut(s) 515
BanII GRGCYC 3 cut(s) 27, 197, 688
BbsI GAAGAC 3 cut(s) 427, 453, 528
Bbv12I GWGCWC 2 cut(s) 27, 197
BccI CCATC 4 cut(s) 139, 506, 583, 672
BciT130I CCWGG 1 cut(s) 480
BlpI GCTNAGC 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 1 cut(s) 480
BpiI GAAGAC 3 cut(s) 427, 453, 528
Bpu1102I GCTNAGC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 655
BseBI CCWGG 1 cut(s) 480
BseCI ATCGAT 1 cut(s) 219
BseGI GGATG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 3 cut(s) 252, 453, 688
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 416
BshFI GGCC 1 cut(s) 562
BshNI GGYRCC 1 cut(s) 515
BshVI ATCGAT 1 cut(s) 219
BsiHKAI GWGCWC 2 cut(s) 27, 197
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 1 cut(s) 562
Bsp1286I GDGCHC 3 cut(s) 27, 197, 688
Bsp143I GATC 2 cut(s) 173, 421
Bsp1720I GCTNAGC 1 cut(s) 260
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 3 cut(s) 251, 452, 687
BspDI ATCGAT 1 cut(s) 219
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 2 cut(s) 168, 429
BspQI GCTCTTC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 655
BsrI ACTGG 1 cut(s) 44
BssMI GATC 2 cut(s) 173, 421
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 694, 706
Bst6I CTCTTC 2 cut(s) 359, 590
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 238, 260, 439, 674
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 2 cut(s) 176, 424
BstMBI GATC 2 cut(s) 173, 421
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstV2I GAAGAC 3 cut(s) 427, 453, 528
BstX2I RGATCY 2 cut(s) 173, 421
BstYI RGATCY 2 cut(s) 173, 421
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 1 cut(s) 562
BsuTUI ATCGAT 1 cut(s) 219
BtsCI GGATG 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 82
CciI TCATGA 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 219
CviAII CATG 5 cut(s) 19, 113, 178, 326, 661
DdeI CTNAG 4 cut(s) 238, 260, 439, 674
DpnI GATC 2 cut(s) 175, 423
DpnII GATC 2 cut(s) 173, 421
Eam1104I CTCTTC 2 cut(s) 359, 590
EarI CTCTTC 2 cut(s) 359, 590
Ecl136II GAGCTC 2 cut(s) 25, 195
Eco147I AGGCCT 1 cut(s) 562
Eco24I GRGCYC 3 cut(s) 27, 197, 688
Eco53kI GAGCTC 2 cut(s) 25, 195
Eco57I CTGAAG 2 cut(s) 377, 594
EcoICRI GAGCTC 2 cut(s) 25, 195
EcoRII CCWGG 1 cut(s) 478
EcoT38I GRGCYC 3 cut(s) 27, 197, 688
FaeI CATG 5 cut(s) 22, 116, 181, 329, 664
FatI CATG 5 cut(s) 18, 112, 177, 325, 660
FauI CCCGC 1 cut(s) 362
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 3 cut(s) 27, 197, 688
HaeIII GGCC 1 cut(s) 562
Hin1II CATG 5 cut(s) 22, 116, 181, 329, 664
HindIII AAGCTT 3 cut(s) 160, 257, 531
HinfI GANTC 7 cut(s) 32, 221, 236, 293, 429, 455, 545
HphI GGTGA 1 cut(s) 598
Hpy188I TCNGA 4 cut(s) 442, 486, 574, 677
Hpy188III TCNNGA 3 cut(s) 61, 90, 113
HpyAV CCTTC 3 cut(s) 401, 648, 658
HpyCH4III ACNGT 2 cut(s) 694, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 4 cut(s) 238, 260, 439, 674
Hsp92II CATG 5 cut(s) 22, 116, 181, 329, 664
Kzo9I GATC 2 cut(s) 173, 421
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 4 cut(s) 22, 200, 372, 403
LpnPI CCDG 9 cut(s) 25, 90, 153, 246, 261, 303, 410, 465, 492
MalI GATC 2 cut(s) 175, 423
MbiI CCGCTC 1 cut(s) 369
MboI GATC 2 cut(s) 173, 421
MflI RGATCY 2 cut(s) 173, 421
MhlI GDGCHC 3 cut(s) 27, 197, 688
MluCI AATT 2 cut(s) 491, 653
MlyI GAGTC 3 cut(s) 230, 449, 554
MnlI CCTC 6 cut(s) 68, 136, 254, 394, 577, 624
MroXI GAANNNNTTC 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 117, 324
MspR9I CCNGG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 2 cut(s) 173, 421
NlaIII CATG 5 cut(s) 22, 116, 181, 329, 664
NlaIV GGNNCC 1 cut(s) 517
PagI TCATGA 1 cut(s) 112
PceI AGGCCT 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 359
PctI GAATGC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 4 cut(s) 32, 221, 293, 429
PflFI GACNNNGTC 1 cut(s) 239
PleI GAGTC 3 cut(s) 230, 449, 553
PpsI GAGTC 3 cut(s) 230, 449, 553
Psp124BI GAGCTC 2 cut(s) 27, 197
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 517
PsuI RGATCY 2 cut(s) 173, 421
PsyI GACNNNGTC 1 cut(s) 239
RseI CAYNNNNRTG 2 cut(s) 117, 324
SacI GAGCTC 2 cut(s) 27, 197
SapI GCTCTTC 1 cut(s) 359
Sau3AI GATC 2 cut(s) 173, 421
SchI GAGTC 3 cut(s) 230, 449, 554
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 3 cut(s) 27, 197, 688
SmiMI CAYNNNNRTG 2 cut(s) 117, 324
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 491, 653
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 1 cut(s) 369
SstI GAGCTC 2 cut(s) 27, 197
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 694, 706
TaqI TCGA 1 cut(s) 219
TaqII GACCGA 1 cut(s) 268
TasI AATT 2 cut(s) 491, 653
TfiI GAWTC 4 cut(s) 32, 221, 293, 429
TspDTI ATGAA 9 cut(s) 101, 129, 135, 227, 314, 342, 543, 666, 677
TspGWI ACGGA 1 cut(s) 638
Tth111I GACNNNGTC 1 cut(s) 239
XapI RAATTY 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 624
XmnI GAANNNNTTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.