Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003875

Physical Location & Seq

Genomic Coordinates Reverse (-)

52836474 .. 52837897

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG371400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTGCAGATGAAGTACCTCTGCTCAACCTCTTTGATTCCTACTGGTTTGAACACGCAGTTTTCAGTTCCAAACCCCATGCAGCAGCAGCAAACAACCCAGGTCTCCAACTGGACCAAGAAGATCAAATACTCCAAGAACCGAACCCTTCAGGCTTGCCAACTCTTATCGTGAGGTCACTAAGTGACCAATTCTTGGACACCAAGTCGAGCCTTTTCTCCGATTCGAGCTTCTCTCCCCACTCGGTTCTCCCCACTCGGTCACGAAAGCTTCAGACAATCCCCTCCGGCAAAGAAGTACTCATAGACTTCTCTAGAGAGAGTGTTCCTGAAAAACAAGTACTTGAGGTTGGGTCAGCACCACTGAAGAAAAGGGTGTTGCACAGTGAAAGATCAAAAACAAGGAAAAGATTAGGGAGCAGCAAGAGCTTGTCGGACCTCGAGTTTGACGAGCTTAAAGGGTTTATGGATCTGGGGTTTGTGTTCACTGAGGAAGACAACAAGGACTCGAAGCTGGTTTCGATAATTCCCGGCTTGCAAAGACTAGGAGTTAGTGATGAAGGTGGGGAAGAAGATAGAGATGAAGAGAAGAGGATTGATGGAAGTCATCATCATTCACATGTTGTTTCCAGGCCTTATCTGTCTGAAGCTTGGGATGCTTTGGAATATCAAAGAAAAGAGGACCAGTTGATGAATTGGAGAGTTCCATCTGCTGTTGATAAAGAGATGAAGCATCATCTCAAGTTCTGGGCTCATACAGTTGCATCAACCCTGATACTGATGAAAATCTCAATTATTTCTGAATTTGAAACCTATTCCAAACCAAGTTGTCAAGTAGAAACTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

283

Amino Acids

32.05

Weight (kDa)

5.59

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42760
fragaria_vesca	FvH4_3g07380 FvH4_5g20610 FvH4_6g27710
malus_domestica	MD05G1027400.v1.1 MD05G1296400.v1.1 MD08G1224000.v1.1 MD10G1276400.v1.1
prunus_persica	Prupe.3G113400_v2.0.a1 Prupe.4G066000_v2.0.a1
pyrus_communis	pycom05g27480 pycom09g15340 pycom10g23080
rosa_chinensis	RchiOBHm_Chr2g0130861 RchiOBHm_Chr5g0011511
rosa_laevigata	RLG00000019155 RLG00000031842
rosa_multiflora	Rmu_sc0003629.1_g000018 Rmu_sc0009001.1_g000007 Rmu_sc0009975.1_g000027 Rmu_sc0009975.1_g000028
rosa_roxburghii	Rroxscaffold_1G00064940 Rroxscaffold_2G00113480
rosa_rugosa	Rorug02G0293800 Rorug04G0457500
rosa_samantha	Rh2AG345100 Rh2CG332000 Rh2DG371400 Rh5AG089300 Rh5BG084600 Rh5CG098300 Rh5DG084600
rosa_wichuraiana	Rw2G027450 Rw5G007760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AclWI	GGATC	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	4 cut(s)	135, 257, 386, 666
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	3 cut(s)	18, 300, 342
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	2 cut(s)	53, 809
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	100, 629
AluBI	AGCT	6 cut(s)	231, 271, 429, 454, 514, 650
AluI	AGCT	6 cut(s)	231, 271, 429, 454, 514, 650
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	477
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	632
ApeKI	GCWGC	5 cut(s)	5, 83, 86, 89, 420
ApoI	RAATTY	1 cut(s)	803
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspS9I	GGNCC	3 cut(s)	115, 436, 682
AsuC2I	CCSGG	1 cut(s)	531
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	3 cut(s)	115, 436, 682
BanII	GRGCYC	1 cut(s)	754
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	4 cut(s)	95, 98, 101, 432
BccI	CCATC	2 cut(s)	593, 715
BciT130I	CCWGG	2 cut(s)	102, 631
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	315, 545
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	5 cut(s)	6, 84, 87, 90, 421
BlsI	GCNGC	5 cut(s)	7, 85, 88, 91, 422
BmcAI	AGTACT	2 cut(s)	300, 342
Bme1390I	CCNGG	3 cut(s)	102, 531, 631
Bme18I	GGWCC	3 cut(s)	115, 436, 682
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	115, 436, 682
BmrFI	CCNGG	3 cut(s)	102, 531, 631
BmsI	GCATC	3 cut(s)	646, 742, 773
BpiI	GAAGAC	1 cut(s)	501
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
BpuEI	CTTGAG	2 cut(s)	365, 725
BpuMI	CCSGG	1 cut(s)	531
BsaBI	GATNNNNATC	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	3 cut(s)	50, 117, 685
Bse8I	GATNNNNATC	1 cut(s)	785
BseBI	CCWGG	2 cut(s)	102, 631
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	661
BseJI	GATNNNNATC	1 cut(s)	785
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	3 cut(s)	50, 117, 685
BseXI	GCAGC	4 cut(s)	95, 98, 101, 432
BshFI	GGCC	1 cut(s)	634
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	288, 531
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	634
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp143I	GATC	3 cut(s)	124, 392, 469
BspANI	GGCC	1 cut(s)	634
BspCNI	CTCAG	1 cut(s)	481
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	477
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	50, 117, 685
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	124, 392, 469
Bst2UI	CCWGG	2 cut(s)	102, 631
Bst4CI	ACNGT	2 cut(s)	386, 760
Bst6I	CTCTTC	2 cut(s)	579, 584
BstC8I	GCNNGC	2 cut(s)	158, 536
BstDEI	CTNAG	2 cut(s)	182, 489
BstF5I	GGATG	1 cut(s)	661
BstKTI	GATC	3 cut(s)	127, 395, 472
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	3 cut(s)	124, 392, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 426, 656
BstNI	CCWGG	2 cut(s)	102, 631
BstNSI	RCATGY	1 cut(s)	623
BstSCI	CCNGG	3 cut(s)	100, 529, 629
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	4 cut(s)	95, 98, 101, 432
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	3 cut(s)	362, 391, 486
Cac8I	GCNNGC	2 cut(s)	158, 536
Cfr13I	GGNCC	3 cut(s)	115, 436, 682
Csp6I	GTAC	3 cut(s)	17, 299, 341
CviAII	CATG	2 cut(s)	80, 620
CviQI	GTAC	3 cut(s)	17, 299, 341
DdeI	CTNAG	2 cut(s)	182, 489
DpnI	GATC	3 cut(s)	126, 394, 471
DpnII	GATC	3 cut(s)	124, 392, 469
DraIII	CACNNNGTG	1 cut(s)	185
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	579, 584
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	2 cut(s)	579, 584
Eco147I	AGGCCT	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	754
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	3 cut(s)	115, 436, 682
Eco57I	CTGAAG	4 cut(s)	135, 257, 386, 666
Eco88I	CYCGRG	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	100, 629
EcoT38I	GRGCYC	1 cut(s)	754
FaeI	CATG	2 cut(s)	83, 623
FaiI	YATR	5 cut(s)	81, 305, 467, 621, 756
FatI	CATG	2 cut(s)	79, 619
Fnu4HI	GCNGC	5 cut(s)	6, 84, 87, 90, 421
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	1 cut(s)	754
Fsp4HI	GCNGC	5 cut(s)	6, 84, 87, 90, 421
FspBI	CTAG	2 cut(s)	315, 545
GluI	GCNGC	5 cut(s)	6, 84, 87, 90, 421
HaeIII	GGCC	1 cut(s)	634
HapII	CCGG	2 cut(s)	288, 531
Hin1II	CATG	2 cut(s)	83, 623
HindIII	AAGCTT	2 cut(s)	269, 648
HinfI	GANTC	3 cut(s)	38, 224, 506
HpaII	CCGG	2 cut(s)	288, 531
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	5 cut(s)	223, 276, 436, 646, 802
Hpy188III	TCNNGA	4 cut(s)	172, 264, 315, 329
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	2 cut(s)	159, 554
HpyCH4III	ACNGT	2 cut(s)	386, 760
HpyCH4V	TGCA	5 cut(s)	8, 83, 382, 538, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 426, 656
HpyF3I	CTNAG	2 cut(s)	182, 489
Hsp92II	CATG	2 cut(s)	83, 623
Kzo9I	GATC	3 cut(s)	124, 392, 469
LmnI	GCTCC	1 cut(s)	417
Lsp1109I	GCAGC	4 cut(s)	95, 98, 101, 432
LweI	GCATC	3 cut(s)	646, 742, 773
MaeI	CTAG	2 cut(s)	315, 545
MaeIII	GTNAC	3 cut(s)	177, 185, 261
MalI	GATC	3 cut(s)	126, 394, 471
MboI	GATC	3 cut(s)	124, 392, 469
MboII	GAAGA	7 cut(s)	134, 379, 506, 581, 584, 596, 601
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	754
MluCI	AATT	5 cut(s)	191, 525, 694, 792, 803
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	2 cut(s)	133, 414
MnlI	CCTC	9 cut(s)	30, 41, 168, 295, 340, 449, 484, 585, 673
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	618
MspI	CCGG	2 cut(s)	288, 531
MspR9I	CCNGG	3 cut(s)	102, 531, 631
MvaI	CCWGG	2 cut(s)	102, 631
MwoI	GCNNNNNNNGC	3 cut(s)	89, 426, 656
NciI	CCSGG	1 cut(s)	531
NdeII	GATC	3 cut(s)	124, 392, 469
NlaIII	CATG	2 cut(s)	83, 623
NmuCI	GTSAC	3 cut(s)	177, 185, 261
NspI	RCATGY	1 cut(s)	623
PaeR7I	CTCGAG	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	634
PciI	ACATGT	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	38, 224
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	5 cut(s)	7, 85, 88, 91, 422
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PscI	ACATGT	1 cut(s)	619
Psp6I	CCWGG	2 cut(s)	100, 629
PspGI	CCWGG	2 cut(s)	100, 629
PspPI	GGNCC	3 cut(s)	115, 436, 682
PspXI	VCTCGAGB	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	3 cut(s)	18, 300, 342
RsaNI	GTAC	3 cut(s)	17, 299, 341
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	5 cut(s)	6, 84, 87, 90, 421
Sau3AI	GATC	3 cut(s)	124, 392, 469
Sau96I	GGNCC	3 cut(s)	115, 436, 682
ScaI	AGTACT	2 cut(s)	300, 342
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	3 cut(s)	102, 531, 631
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	3 cut(s)	646, 742, 773
SfcI	CTRYAG	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	440
SinI	GGWCC	3 cut(s)	115, 436, 682
SlaI	CTCGAG	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	3 cut(s)	344, 440, 740
SmoI	CTYRAG	3 cut(s)	344, 440, 740
Sse9I	AATT	5 cut(s)	191, 525, 694, 792, 803
SseBI	AGGCCT	1 cut(s)	634
SspMI	CTAG	2 cut(s)	315, 545
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	3 cut(s)	100, 529, 629
TaaI	ACNGT	2 cut(s)	386, 760
TaqI	TCGA	5 cut(s)	209, 227, 441, 509, 521
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	5 cut(s)	191, 525, 694, 792, 803
TatI	WGTACW	2 cut(s)	298, 340
TfiI	GAWTC	2 cut(s)	38, 224
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	3 cut(s)	369, 391, 493
TseFI	GTSAC	3 cut(s)	177, 185, 261
TseI	GCWGC	5 cut(s)	5, 83, 86, 89, 420
Tsp45I	GTSAC	3 cut(s)	177, 185, 261
TspDTI	ATGAA	6 cut(s)	27, 573, 597, 707, 743, 797
TspRI	CASTG	3 cut(s)	369, 391, 493
Van91I	CCANNNNNTGG	1 cut(s)	196
VpaK11BI	GGWCC	3 cut(s)	115, 436, 682
XapI	RAATTY	1 cut(s)	803
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	1 cut(s)	623
XhoI	CTCGAG	1 cut(s)	440
XspI	CTAG	2 cut(s)	315, 545
ZrmI	AGTACT	2 cut(s)	300, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.