Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004510

Physical Location & Seq

Genomic Coordinates Forward (+)

18309022 .. 18309826

Gene Structure 805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGAGTAGTACTGATCGATGGATCAACGGTACGATCTTTTGTAGACGACGAAGAGCAATTCAAAAAAAGCGTCGACGAGAGGTTCGCAGCTCTGGATCTGAACAAAGACGGCGTTTTATCGCGATCGGAGCTACGAAAAGCGTTTGAATCGATGAGGCTACTTGAATCGCACTTTGGCGTTGATGTGGTGACTCCTCAGGACGAGCTGACGAACCTCTACGATTCGATCTTCGAGAAATTCGATACGGATCAAAGCGGTTCTGTGGATCTGGAGGAGTTTAGATCGGAGATGAAGAAGATCGTGCTTGCGATTGCTGATGGGCTTGGATCTTGTCCGATTACGATGGTGTTAGATGATGATGATGATAATTTCTTGAAAAAAGCTGCGGATTTGGAAGCTTCCAAGCTTGAGAAAGCTTCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

142

Amino Acids

15.82

Weight (kDa)

4.33

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	27 - 98	4.7e-11	EF-hand domain pair
EF-hand_1	PF00036	75 - 100	1.4e-06	EF hand domain
EF-hand_5	PF13202	75 - 96	7.7e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44310
fragaria_vesca	FvH4_7g00040
malus_domestica	MD02G1319800.v1.1
prunus_persica	Prupe.2G002300_v2.0.a1
pyrus_communis	pycom02g26780
rosa_chinensis	RchiOBHm_Chr1g0313211 RchiOBHm_Chr1g0331981 RchiOBHm_Chr4g0404011 RchiOBHm_Chr5g0065041
rosa_laevigata	RLG00000013113 RLG00000020975 RLG00000030815
rosa_multiflora	Rmu_sc0000104.1_g000006 Rmu_sc0003005.1_g000020 Rmu_sc0003720.1_g000017 Rmu_sc0022605.1_g000001 Rmu_sc0027690.1_g000003
rosa_roxburghii	Rroxscaffold_4G00332380
rosa_rugosa	Rorug06G0096100 RorugPtG0001600
rosa_samantha	Rh1AG001700 Rh1CG003700 Rh1CG006300 Rh1CG115200 Rh1DG001600 Rh5DG507900 Rh6BG517000 Rh6CG522900
rosa_wichuraiana	Rw1G000080 Rw4G006740 Rw5G034440 Rw6G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	45, 75
AccII	CGCG	1 cut(s)	124
AciI	CCGC	2 cut(s)	258, 389
AclWI	GGATC	5 cut(s)	31, 105, 258, 276, 337
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	2 cut(s)	12, 33
AgsI	TTSAA	4 cut(s)	64, 149, 167, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	7 cut(s)	92, 133, 208, 386, 401, 409, 419
AluI	AGCT	7 cut(s)	92, 133, 208, 386, 401, 409, 419
AlwI	GGATC	5 cut(s)	31, 105, 258, 276, 337
ApeKI	GCWGC	2 cut(s)	89, 386
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	4 cut(s)	57, 68, 89, 100
AsuHPI	GGTGA	1 cut(s)	202
AxyI	CCTNAGG	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	101, 373
BccI	CCATC	3 cut(s)	14, 314, 340
BceAI	ACGGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	90, 387
BlsI	GCNGC	2 cut(s)	91, 388
BmcAI	AGTACT	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	293
Bsa29I	ATCGAT	2 cut(s)	18, 152
BsaBI	GATNNNNATC	1 cut(s)	249
Bse21I	CCTNAGG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	249
BseCI	ATCGAT	2 cut(s)	18, 152
BseJI	GATNNNNATC	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	2 cut(s)	186, 290
BseXI	GCAGC	2 cut(s)	101, 373
Bsh1236I	CGCG	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	128
BshVI	ATCGAT	2 cut(s)	18, 152
BsiEI	CGRYCG	1 cut(s)	128
Bsp68I	TCGCGA	1 cut(s)	124
BspACI	CCGC	2 cut(s)	258, 389
BspCNI	CTCAG	1 cut(s)	211
BspDI	ATCGAT	2 cut(s)	18, 152
BspFNI	CGCG	1 cut(s)	124
BspPI	GGATC	5 cut(s)	31, 105, 258, 276, 337
BspQI	GCTCTTC	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	124
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	101, 373
BstX2I	RGATCY	3 cut(s)	97, 268, 329
BstYI	RGATCY	3 cut(s)	97, 268, 329
Bsu15I	ATCGAT	2 cut(s)	18, 152
Bsu36I	CCTNAGG	1 cut(s)	198
BsuTUI	ATCGAT	2 cut(s)	18, 152
BtuMI	TCGCGA	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	309
ClaI	ATCGAT	2 cut(s)	18, 152
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	11, 32
CviJI	RGCY	9 cut(s)	92, 133, 160, 208, 325, 386, 401, 409, 419
CviKI_1	RGCY	9 cut(s)	92, 133, 160, 208, 325, 386, 401, 409, 419
CviQI	GTAC	2 cut(s)	11, 32
DdeI	CTNAG	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	198
FblI	GTMKAC	2 cut(s)	45, 75
Fnu4HI	GCNGC	2 cut(s)	90, 387
Fsp4HI	GCNGC	2 cut(s)	90, 387
GluI	GCNGC	2 cut(s)	90, 387
GsuI	CTGGAG	1 cut(s)	293
HgaI	GACGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	3 cut(s)	399, 407, 417
HinfI	GANTC	4 cut(s)	149, 167, 193, 224
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	46, 76
Hpy188I	TCNGA	4 cut(s)	102, 130, 289, 339
Hpy188III	TCNNGA	6 cut(s)	95, 123, 200, 235, 272, 376
Hpy8I	GTNNAC	2 cut(s)	46, 76
Hpy99I	CGWCG	3 cut(s)	53, 77, 80
HpyCH4III	ACNGT	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	198
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	80, 185, 257
Lsp1109I	GCAGC	2 cut(s)	101, 373
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	5 cut(s)	65, 223, 307, 310, 414
MflI	RGATCY	3 cut(s)	97, 268, 329
MluCI	AATT	3 cut(s)	59, 239, 370
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	75, 150, 207, 227, 268
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	190
NruI	TCGCGA	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	149, 167, 224
PkrI	GCNGC	2 cut(s)	91, 388
Ple19I	CGATCG	1 cut(s)	128
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PsuI	RGATCY	3 cut(s)	97, 268, 329
PvuI	CGATCG	1 cut(s)	128
RruI	TCGCGA	1 cut(s)	124
RsaI	GTAC	2 cut(s)	12, 33
RsaNI	GTAC	2 cut(s)	11, 32
SalI	GTCGAC	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	48
SatI	GCNGC	2 cut(s)	90, 387
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	1 cut(s)	187
SetI	ASST	9 cut(s)	86, 94, 135, 210, 219, 388, 403, 411, 421
SgrDI	CGTCGACG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	59, 239, 370
SsiI	CCGC	2 cut(s)	258, 389
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	6 cut(s)	18, 75, 152, 227, 234, 243
TasI	AATT	3 cut(s)	59, 239, 370
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	3 cut(s)	149, 167, 224
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	89, 386
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	263
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	2 cut(s)	45, 75
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.