Rmu_sc0003720.1_g000017

EF-hand domain pair

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003720.1
OG0004510
Physical Location & Seq
Reverse (-)
99869 .. 100192
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003720.1_g000017.1.cds

Sequence Viewer

Length: 324 bp
atgggagtggtgataattgacggaacgacggtgaaggacttcgtgagcgacgaggggcagttcaagaagagcgtggacgagcgttttgctgctctggatctgaacaacgatggtgttctgtcctggtcggagctgcggaaagcattcgagtcgatgagattgatcgagacccacttcggcatagaagtggcgaccccgccggatcagctgacgcagctctacgattccatattcgataagttcgactgcgaccagagagggacagtggatctggacgagttcagggaggagatgaagagattatgttggcaaaaaaaaagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

107

Amino Acids

12.44

Weight (kDa)

4.66

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 136, 197
AclWI GGATC 3 cut(s) 105, 210, 276
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 3 cut(s) 133, 208, 217
AluI AGCT 3 cut(s) 133, 208, 217
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 3 cut(s) 105, 210, 276
ApeKI GCWGC 3 cut(s) 89, 133, 214
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 2 cut(s) 38, 143
AsuHPI GGTGA 2 cut(s) 22, 43
BbvI GCAGC 3 cut(s) 76, 120, 226
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 4 cut(s) 68, 102, 132, 166
BciT130I CCWGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 161
BisI GCNGC 3 cut(s) 90, 134, 215
BlsI GCNGC 3 cut(s) 91, 135, 216
Bme1390I CCNGG 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 161
BseBI CCWGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 3 cut(s) 76, 120, 226
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 97, 162, 202, 268
BspACI CCGC 2 cut(s) 136, 197
BspPI GGATC 3 cut(s) 105, 210, 276
BspQI GCTCTTC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 161
BssMI GATC 4 cut(s) 97, 162, 202, 268
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 31, 265
Bst6I CTCTTC 2 cut(s) 62, 290
BstKTI GATC 4 cut(s) 100, 165, 205, 271
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 4 cut(s) 97, 162, 202, 268
BstMWI GCNNNNNNNGC 2 cut(s) 205, 214
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 76, 120, 226
BstX2I RGATCY 2 cut(s) 97, 268
BstYI RGATCY 2 cut(s) 97, 268
BtsIMutI CAGTG 1 cut(s) 270
CseI GACGC 1 cut(s) 220
CviJI RGCY 3 cut(s) 133, 208, 217
CviKI_1 RGCY 3 cut(s) 133, 208, 217
DpnI GATC 4 cut(s) 99, 164, 204, 270
DpnII GATC 4 cut(s) 97, 162, 202, 268
Eam1104I CTCTTC 2 cut(s) 62, 290
EarI CTCTTC 2 cut(s) 62, 290
Eco31I GGTCTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 122
FaiI YATR 3 cut(s) 182, 230, 304
FaqI GGGAC 1 cut(s) 274
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 90, 134, 215
Fsp4HI GCNGC 3 cut(s) 90, 134, 215
GluI GCNGC 3 cut(s) 90, 134, 215
HapII CCGG 1 cut(s) 200
HgaI GACGC 1 cut(s) 220
HinfI GANTC 2 cut(s) 149, 224
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 22, 43
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 102, 130
Hpy188III TCNNGA 5 cut(s) 43, 64, 95, 166, 272
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 31, 53
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 31, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 214
Kzo9I GATC 4 cut(s) 97, 162, 202, 268
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 7 cut(s) 80, 109, 136, 213, 257, 266, 268
Lsp1109I GCAGC 3 cut(s) 76, 120, 226
MalI GATC 4 cut(s) 99, 164, 204, 270
MboI GATC 4 cut(s) 97, 162, 202, 268
MboII GAAGA 2 cut(s) 79, 307
MflI RGATCY 2 cut(s) 97, 268
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 46, 251, 280
MroXI GAANNNNTTC 2 cut(s) 38, 143
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 124
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 205, 214
NdeII GATC 4 cut(s) 97, 162, 202, 268
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 240
PctI GAATGC 1 cut(s) 143
PdmI GAANNNNTTC 2 cut(s) 38, 143
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 91, 135, 216
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PsuI RGATCY 2 cut(s) 97, 268
PvuII CAGCTG 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 62
SatI GCNGC 3 cut(s) 90, 134, 215
Sau3AI GATC 4 cut(s) 97, 162, 202, 268
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 124
SetI ASST 3 cut(s) 135, 210, 219
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 136, 197
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 31, 265
TaqI TCGA 5 cut(s) 147, 152, 165, 234, 243
TasI AATT 1 cut(s) 15
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 1 cut(s) 270
TseI GCWGC 3 cut(s) 89, 133, 214
TspDTI ATGAA 1 cut(s) 308
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 270
XmnI GAANNNNTTC 2 cut(s) 38, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.