Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004510

Physical Location & Seq

Genomic Coordinates Reverse (-)

24587183 .. 24588097

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGACAATTATTCTGCTTGCCAAGACACTTTACTTGTGCCACTCTACCAGTTTCAGTCATGAGAAATTTTTAATTGTTACAAAAAAATATAGATGGTATATCACGTGTTTTTATAGCATATGTGACAGTCACATTGAAAAATCTCTCGTCAATCACCGCCCACCAATCCATATATTATCCTTCTCCTTCATCCATGGACCATCTCCACCATCAATAAACACAAACAACACCAACACCAACACCAAACAATCACATCTTAATTTGAATTTCACAACACAATCACTGAATCAATCATCGATGGGAGTGGTGATAATCGACGGAAGCACTGTGAGGGACTTCGTGAGTGACGAGGCCCAGTTCAAGAAGAGCGTCGACGACCAGTTTGCCGCCCTCGACCTCAACAGCGACGGCGTCCTCTCCCGGCCGGAGCTCCGCAAAGCCTTCGAGTCCCTCAGGCTCATCGAGGCCCACTTCGGCATCGACGTGGCCACCCCGCCGGAGCAGCTGACGCAGCTGTACGACTCCATATTCGACAAGTTCGACAGCGACCAGAGTGGGACGGTGGATCTGGAAGAGTTCAGGGAGGAGATGAAGAAGATTATGCTGGCCATCGCCGACGGGCTGGGCTCCTCCCCCATCCAGATGGTTCTGGAGGACGACGATCAGAACTTGCTCAAGAAAGCAGCAGATCTGGAGACTGCCAAGGCCTCTCACTCAATCTCCTCCGCCGGCACTGGCGCTGCTGGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

251

Amino Acids

27.76

Weight (kDa)

5.31

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44310
fragaria_vesca	FvH4_7g00040
malus_domestica	MD02G1319800.v1.1
prunus_persica	Prupe.2G002300_v2.0.a1
pyrus_communis	pycom02g26780
rosa_chinensis	RchiOBHm_Chr1g0313211 RchiOBHm_Chr1g0331981 RchiOBHm_Chr4g0404011 RchiOBHm_Chr5g0065041
rosa_laevigata	RLG00000013113 RLG00000020975 RLG00000030815
rosa_multiflora	Rmu_sc0000104.1_g000006 Rmu_sc0003005.1_g000020 Rmu_sc0003720.1_g000017 Rmu_sc0022605.1_g000001 Rmu_sc0027690.1_g000003
rosa_roxburghii	Rroxscaffold_4G00332380
rosa_rugosa	Rorug06G0096100 RorugPtG0001600
rosa_samantha	Rh1AG001700 Rh1CG003700 Rh1CG006300 Rh1CG115200 Rh1DG001600 Rh5DG507900 Rh6BG517000 Rh6CG522900
rosa_wichuraiana	Rw1G000080 Rw4G006740 Rw5G034440 Rw6G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	5 cut(s)	157, 387, 433, 494, 726
AclWI	GGATC	1 cut(s)	573
AcoI	YGGCCR	3 cut(s)	422, 486, 606
AcsI	RAATTY	2 cut(s)	65, 265
AcvI	CACGTG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	137, 265, 361
AjiI	CACGTC	1 cut(s)	484
AluBI	AGCT	3 cut(s)	430, 505, 514
AluI	AGCT	3 cut(s)	430, 505, 514
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	689
AlwI	GGATC	1 cut(s)	573
AoxI	GGCC	6 cut(s)	351, 422, 465, 486, 606, 705
ApeKI	GCWGC	4 cut(s)	502, 511, 683, 740
ApoI	RAATTY	2 cut(s)	65, 265
ArsI	GACNNNNNNTTYG	4 cut(s)	365, 397, 512, 544
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	3 cut(s)	197, 352, 466
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	146, 319
AvaII	GGWCC	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	452
BalI	TGGCCA	2 cut(s)	488, 608
BanII	GRGCYC	2 cut(s)	432, 629
BbrPI	CACGTG	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	4 cut(s)	514, 523, 695, 727
BccI	CCATC	7 cut(s)	87, 208, 217, 292, 617, 637, 644
BceAI	ACGGC	1 cut(s)	424
BcgI	CGANNNNNNTGC	4 cut(s)	365, 399, 424, 458
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	689
BfoI	RGCGCY	1 cut(s)	741
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	5 cut(s)	387, 503, 512, 684, 741
BlsI	GCNGC	5 cut(s)	388, 504, 513, 685, 742
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	197
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	3 cut(s)	197, 352, 466
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	349
BpmI	CTGGAG	2 cut(s)	671, 713
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	421
Bsa29I	ATCGAT	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	193, 702
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bse118I	RCCGGY	1 cut(s)	728
Bse1I	ACTGG	4 cut(s)	48, 355, 379, 739
Bse21I	CCTNAGG	1 cut(s)	452
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	193, 702
BseGI	GGATG	2 cut(s)	189, 636
BseMII	CTCAG	1 cut(s)	466
BseNI	ACTGG	4 cut(s)	48, 355, 379, 739
BseRI	GAGGAG	3 cut(s)	599, 619, 712
BseX3I	CGGCCG	1 cut(s)	422
BseXI	GCAGC	4 cut(s)	514, 523, 695, 727
BseYI	CCCAGC	1 cut(s)	622
Bsh1285I	CGRYCG	1 cut(s)	425
BshFI	GGCC	6 cut(s)	353, 424, 467, 488, 608, 707
BshVI	ATCGAT	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	4 cut(s)	421, 425, 497, 729
BslFI	GGGAC	3 cut(s)	347, 433, 571
BsmAI	GTCTC	1 cut(s)	689
BsmFI	GGGAC	3 cut(s)	347, 433, 571
BsnI	GGCC	6 cut(s)	353, 424, 467, 488, 608, 707
Bsp1286I	GDGCHC	2 cut(s)	432, 629
Bsp143I	GATC	3 cut(s)	565, 661, 688
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	5 cut(s)	157, 387, 433, 494, 726
BspANI	GGCC	6 cut(s)	353, 424, 467, 488, 608, 707
BspCNI	CTCAG	1 cut(s)	465
BspDI	ATCGAT	1 cut(s)	296
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	628
BspPI	GGATC	1 cut(s)	573
BspQI	GCTCTTC	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	728
BsrI	ACTGG	4 cut(s)	48, 355, 379, 739
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	2 cut(s)	193, 702
BssMI	GATC	3 cut(s)	565, 661, 688
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	193, 702
Bst4CI	ACNGT	3 cut(s)	128, 328, 562
Bst6I	CTCTTC	2 cut(s)	359, 567
BstACI	GRCGYC	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	18, 606, 730, 745
BstDEI	CTNAG	1 cut(s)	452
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	189, 636
BstH2I	RGCGCY	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	3 cut(s)	568, 664, 691
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	3 cut(s)	565, 661, 688
BstMCI	CGRYCG	1 cut(s)	425
BstMWI	GCNNNNNNNGC	4 cut(s)	502, 508, 511, 744
BstSCI	CCNGG	1 cut(s)	419
BstV1I	GCAGC	4 cut(s)	514, 523, 695, 727
BstX2I	RGATCY	2 cut(s)	565, 688
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	2 cut(s)	565, 688
BstZI	CGGCCG	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	296
Bsu36I	CCTNAGG	1 cut(s)	452
BsuRI	GGCC	6 cut(s)	353, 424, 467, 488, 608, 707
BsuTUI	ATCGAT	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	595
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	189, 636
BtsIMutI	CAGTG	3 cut(s)	281, 324, 732
Cac8I	GCNNGC	4 cut(s)	18, 606, 730, 745
CciI	TCATGA	1 cut(s)	58
CfoI	GCGC	1 cut(s)	740
Cfr10I	RCCGGY	1 cut(s)	728
Cfr13I	GGNCC	3 cut(s)	197, 352, 466
ClaI	ATCGAT	1 cut(s)	296
CseI	GACGC	3 cut(s)	358, 400, 517
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	2 cut(s)	59, 194
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	3 cut(s)	567, 663, 690
DpnII	GATC	3 cut(s)	565, 661, 688
EaeI	YGGCCR	3 cut(s)	422, 486, 606
EagI	CGGCCG	1 cut(s)	422
Eam1104I	CTCTTC	2 cut(s)	359, 567
EarI	CTCTTC	2 cut(s)	359, 567
EciI	GGCGGA	1 cut(s)	715
Ecl136II	GAGCTC	1 cut(s)	430
EclXI	CGGCCG	1 cut(s)	422
Eco130I	CCWWGG	2 cut(s)	193, 702
Eco147I	AGGCCT	1 cut(s)	707
Eco24I	GRGCYC	2 cut(s)	432, 629
Eco47I	GGWCC	1 cut(s)	197
Eco52I	CGGCCG	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	430
Eco72I	CACGTG	1 cut(s)	105
Eco81I	CCTNAGG	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	193, 702
EcoT38I	GRGCYC	2 cut(s)	432, 629
ErhI	CCWWGG	2 cut(s)	193, 702
FaeI	CATG	2 cut(s)	62, 197
FaqI	GGGAC	3 cut(s)	347, 433, 571
FatI	CATG	2 cut(s)	58, 193
FauI	CCCGC	1 cut(s)	501
FauNDI	CATATG	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	5 cut(s)	387, 503, 512, 684, 741
FokI	GGATG	2 cut(s)	176, 623
FriOI	GRGCYC	2 cut(s)	432, 629
Fsp4HI	GCNGC	5 cut(s)	387, 503, 512, 684, 741
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	5 cut(s)	387, 503, 512, 684, 741
GsaI	CCCAGC	1 cut(s)	626
GsuI	CTGGAG	2 cut(s)	671, 713
HaeII	RGCGCY	1 cut(s)	741
HaeIII	GGCC	6 cut(s)	353, 424, 467, 488, 608, 707
HapII	CCGG	4 cut(s)	421, 425, 497, 729
HgaI	GACGC	3 cut(s)	358, 400, 517
HhaI	GCGC	1 cut(s)	740
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	62, 197
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	3 cut(s)	286, 446, 521
HpaII	CCGG	4 cut(s)	421, 425, 497, 729
HphI	GGTGA	2 cut(s)	146, 319
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	1 cut(s)	666
Hpy188III	TCNNGA	8 cut(s)	59, 340, 361, 569, 640, 650, 676, 692
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	7 cut(s)	320, 374, 377, 410, 485, 620, 662
HpyAV	CCTTC	3 cut(s)	190, 196, 451
HpyCH4III	ACNGT	3 cut(s)	128, 328, 562
HpyCH4IV	ACGT	2 cut(s)	104, 483
HpyF10VI	GCNNNNNNNGC	4 cut(s)	502, 508, 511, 744
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	2 cut(s)	104, 483
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	62, 197
HspAI	GCGC	1 cut(s)	738
KroI	GCCGGC	1 cut(s)	728
KroNI	GCCGGC	1 cut(s)	730
Kzo9I	GATC	3 cut(s)	565, 661, 688
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	4 cut(s)	427, 435, 499, 632
Lsp1109I	GCAGC	4 cut(s)	514, 523, 695, 727
LweI	GCATC	1 cut(s)	486
MaeII	ACGT	2 cut(s)	104, 483
MaeIII	GTNAC	4 cut(s)	76, 122, 128, 344
MalI	GATC	3 cut(s)	567, 663, 690
MboI	GATC	3 cut(s)	565, 661, 688
MboII	GAAGA	4 cut(s)	376, 584, 604, 607
MflI	RGATCY	2 cut(s)	565, 688
MhlI	GDGCHC	2 cut(s)	432, 629
MlsI	TGGCCA	2 cut(s)	488, 608
MluCI	AATT	5 cut(s)	6, 65, 72, 259, 265
MluNI	TGGCCA	2 cut(s)	488, 608
MlyI	GAGTC	2 cut(s)	455, 515
Mox20I	TGGCCA	2 cut(s)	488, 608
MroNI	GCCGGC	1 cut(s)	728
MscI	TGGCCA	2 cut(s)	488, 608
MseI	TTAA	2 cut(s)	71, 258
MslI	CAYNNNNRTG	2 cut(s)	482, 641
Msp20I	TGGCCA	2 cut(s)	488, 608
MspA1I	CMGCKG	2 cut(s)	505, 514
MspI	CCGG	4 cut(s)	421, 425, 497, 729
MspR9I	CCNGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	4 cut(s)	502, 508, 511, 744
NaeI	GCCGGC	1 cut(s)	730
NciI	CCSGG	1 cut(s)	421
NcoI	CCATGG	1 cut(s)	193
NdeI	CATATG	1 cut(s)	119
NdeII	GATC	3 cut(s)	565, 661, 688
NgoMIV	GCCGGC	1 cut(s)	728
NlaIII	CATG	2 cut(s)	62, 197
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	3 cut(s)	122, 128, 344
PagI	TCATGA	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	707
PciSI	GCTCTTC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	3 cut(s)	345, 480, 537
PdiI	GCCGGC	1 cut(s)	730
PfeI	GAWTC	1 cut(s)	286
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	388, 504, 513, 685, 742
PleI	GAGTC	2 cut(s)	454, 515
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
PpsI	GAGTC	2 cut(s)	454, 515
Ppu21I	YACGTR	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	432
PspCI	CACGTG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	622
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	3 cut(s)	197, 352, 466
PsuI	RGATCY	2 cut(s)	565, 688
PsyI	GACNNNGTC	1 cut(s)	410
PvuII	CAGCTG	2 cut(s)	505, 514
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	2 cut(s)	482, 641
SacI	GAGCTC	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	371
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	71, 258
SatI	GCNGC	5 cut(s)	387, 503, 512, 684, 741
Sau3AI	GATC	3 cut(s)	565, 661, 688
Sau96I	GGNCC	3 cut(s)	197, 352, 466
SchI	GAGTC	2 cut(s)	455, 515
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	2 cut(s)	432, 629
SetI	ASST	6 cut(s)	107, 399, 432, 486, 507, 516
SfaNI	GCATC	1 cut(s)	486
SgrDI	CGTCGACG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	482, 641
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	5 cut(s)	6, 65, 72, 259, 265
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	5 cut(s)	157, 387, 433, 494, 726
SstI	GAGCTC	1 cut(s)	432
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	2 cut(s)	193, 702
TaaI	ACNGT	3 cut(s)	128, 328, 562
TaiI	ACGT	2 cut(s)	107, 486
TaqI	TCGA	9 cut(s)	296, 315, 372, 393, 444, 462, 480, 531, 540
TasI	AATT	5 cut(s)	6, 65, 72, 259, 265
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	2 cut(s)	71, 258
Tru9I	TTAA	2 cut(s)	71, 258
TscAI	CASTG	3 cut(s)	288, 331, 739
TseFI	GTSAC	3 cut(s)	122, 128, 344
TseI	GCWGC	4 cut(s)	502, 511, 683, 740
Tsp45I	GTSAC	3 cut(s)	122, 128, 344
TspDTI	ATGAA	2 cut(s)	178, 605
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	3 cut(s)	288, 331, 739
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	65, 265
XmiI	GTMKAC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.