Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022605.1

Orthogroup ID

OG0004510

Physical Location & Seq

Genomic Coordinates Forward (+)

564 .. 968

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022605.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggatagatgtttgctgatggatagatgtttgcagacatttacgcaggaaaagaagaaaagaaaaatcgacggaggaaagatgggagtggtgataattgacggaacgacggtgaaggacttcgtgagagacgaggtgcagttcaagaagagcatggacgagcgttttgctgctctggatctgaacaacgatggtgttctgtcccggtcggagctgcggaaagcattcgagtcgatgagattgatcaagacccacttcggcatagaagtggcgaccccgctggatcagctgacgcagctctacgattccatattcgataagttcgactgcgaccagagagggacggtggatctggacgagttcagggaggagatgaagagattatgctggccaaaaaaaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

134

Amino Acids

15.76

Weight (kDa)

7.62

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44310
fragaria_vesca	FvH4_7g00040
malus_domestica	MD02G1319800.v1.1
prunus_persica	Prupe.2G002300_v2.0.a1
pyrus_communis	pycom02g26780
rosa_chinensis	RchiOBHm_Chr1g0313211 RchiOBHm_Chr1g0331981 RchiOBHm_Chr4g0404011 RchiOBHm_Chr5g0065041
rosa_laevigata	RLG00000013113 RLG00000020975 RLG00000030815
rosa_multiflora	Rmu_sc0000104.1_g000006 Rmu_sc0003005.1_g000020 Rmu_sc0003720.1_g000017 Rmu_sc0022605.1_g000001 Rmu_sc0027690.1_g000003
rosa_roxburghii	Rroxscaffold_4G00332380
rosa_rugosa	Rorug06G0096100 RorugPtG0001600
rosa_samantha	Rh1AG001700 Rh1CG003700 Rh1CG006300 Rh1CG115200 Rh1DG001600 Rh5DG507900 Rh6BG517000 Rh6CG522900
rosa_wichuraiana	Rw1G000080 Rw4G006740 Rw5G034440 Rw6G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	217, 278
AclWI	GGATC	3 cut(s)	186, 291, 357
AcoI	YGGCCR	1 cut(s)	389
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	3 cut(s)	214, 289, 298
AluI	AGCT	3 cut(s)	214, 289, 298
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	3 cut(s)	186, 291, 357
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	3 cut(s)	170, 214, 295
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	2 cut(s)	119, 224
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	103, 124
BalI	TGGCCA	1 cut(s)	391
BbvI	GCAGC	3 cut(s)	157, 201, 307
BccI	CCATC	3 cut(s)	13, 76, 185
BcgI	CGANNNNNNTGC	4 cut(s)	149, 183, 213, 247
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	123
BisI	GCNGC	3 cut(s)	171, 215, 296
BlsI	GCNGC	3 cut(s)	172, 216, 297
Bme1390I	CCNGG	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	3 cut(s)	157, 201, 307
BsgI	GTGCAG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	391
BsiEI	CGRYCG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	187, 355
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	2 cut(s)	187, 355
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	178, 243, 283, 349
BspACI	CCGC	2 cut(s)	217, 278
BspANI	GGCC	1 cut(s)	391
BspPI	GGATC	3 cut(s)	186, 291, 357
BspQI	GCTCTTC	1 cut(s)	143
BssMI	GATC	4 cut(s)	178, 243, 283, 349
Bst4CI	ACNGT	2 cut(s)	112, 346
Bst6I	CTCTTC	2 cut(s)	143, 371
BstC8I	GCNNGC	1 cut(s)	389
BstKTI	GATC	4 cut(s)	181, 246, 286, 352
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	4 cut(s)	178, 243, 283, 349
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 295
BstSCI	CCNGG	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	157, 201, 307
BstX2I	RGATCY	2 cut(s)	178, 349
BstYI	RGATCY	2 cut(s)	178, 349
BsuRI	GGCC	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	389
CseI	GACGC	1 cut(s)	301
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	4 cut(s)	214, 289, 298, 391
CviKI_1	RGCY	4 cut(s)	214, 289, 298, 391
DpnI	GATC	4 cut(s)	180, 245, 285, 351
DpnII	GATC	4 cut(s)	178, 243, 283, 349
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	2 cut(s)	143, 371
EarI	CTCTTC	2 cut(s)	143, 371
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	155, 263, 311, 385
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	2 cut(s)	187, 355
FatI	CATG	1 cut(s)	153
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	171, 215, 296
Fsp4HI	GCNGC	3 cut(s)	171, 215, 296
GluI	GCNGC	3 cut(s)	171, 215, 296
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	301
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	2 cut(s)	230, 305
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	103, 124
Hpy188I	TCNGA	2 cut(s)	183, 211
Hpy188III	TCNNGA	5 cut(s)	124, 145, 176, 247, 353
Hpy99I	CGWCG	2 cut(s)	74, 112
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	112, 346
HpyCH4V	TGCA	2 cut(s)	34, 139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 295
Hsp92II	CATG	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	178, 243, 283, 349
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	8 cut(s)	32, 161, 218, 266, 338, 347, 349, 373
Lsp1109I	GCAGC	3 cut(s)	157, 201, 307
MalI	GATC	4 cut(s)	180, 245, 285, 351
MboI	GATC	4 cut(s)	178, 243, 283, 349
MboII	GAAGA	3 cut(s)	67, 160, 388
MflI	RGATCY	2 cut(s)	178, 349
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	1 cut(s)	96
MluNI	TGGCCA	1 cut(s)	391
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	4 cut(s)	68, 127, 332, 361
Mox20I	TGGCCA	1 cut(s)	391
MroXI	GAANNNNTTC	2 cut(s)	119, 224
MscI	TGGCCA	1 cut(s)	391
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	391
MspA1I	CMGCKG	2 cut(s)	280, 289
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	205
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	286, 295
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	4 cut(s)	178, 243, 283, 349
NlaIII	CATG	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 321
PctI	GAATGC	1 cut(s)	224
PdmI	GAANNNNTTC	2 cut(s)	119, 224
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	172, 216, 297
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	178, 349
PvuII	CAGCTG	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	143
SatI	GCNGC	3 cut(s)	171, 215, 296
Sau3AI	GATC	4 cut(s)	178, 243, 283, 349
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	4 cut(s)	138, 216, 291, 300
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	2 cut(s)	217, 278
StyD4I	CCNGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	112, 346
TaqI	TCGA	5 cut(s)	69, 228, 233, 315, 324
TasI	AATT	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	305
TseI	GCWGC	3 cut(s)	170, 214, 295
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	2 cut(s)	87, 117
XmnI	GAANNNNTTC	2 cut(s)	119, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.