Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027690.1

Orthogroup ID

OG0004510

Physical Location & Seq

Genomic Coordinates Reverse (-)

14116 .. 14550

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027690.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgggagtggtgataatcgacggaacgacggtgaaggacttcgtgagcaacgaggtgctgttcaagaagagcgtggacgagcgttttgctgctctggatctgaacaacgatggtgttctgtcccggtcggagctgcggaaagcgttcgagtcgatgagattgatcgagacccacttcggcatagaagtggcgacctcgccggatcagctgacgcagctctacgattccatattcgataagttcgactgcgaccacagcgggacggtggacctggacgagttcagggaggagatgaagaagattatgctggccatcgccgacgggcttggctcttgccctattcagatggttctcgaggacgaccaccagagctttctccagcaggctgcagatctcgaggcttccaagatatcatcatcagtttcacacacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

144

Amino Acids

16.04

Weight (kDa)

4.45

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44310
fragaria_vesca	FvH4_7g00040
malus_domestica	MD02G1319800.v1.1
prunus_persica	Prupe.2G002300_v2.0.a1
pyrus_communis	pycom02g26780
rosa_chinensis	RchiOBHm_Chr1g0313211 RchiOBHm_Chr1g0331981 RchiOBHm_Chr4g0404011 RchiOBHm_Chr5g0065041
rosa_laevigata	RLG00000013113 RLG00000020975 RLG00000030815
rosa_multiflora	Rmu_sc0000104.1_g000006 Rmu_sc0003005.1_g000020 Rmu_sc0003720.1_g000017 Rmu_sc0022605.1_g000001 Rmu_sc0027690.1_g000003
rosa_roxburghii	Rroxscaffold_4G00332380
rosa_rugosa	Rorug06G0096100 RorugPtG0001600
rosa_samantha	Rh1AG001700 Rh1CG003700 Rh1CG006300 Rh1CG115200 Rh1DG001600 Rh5DG507900 Rh6BG517000 Rh6CG522900
rosa_wichuraiana	Rw1G000080 Rw4G006740 Rw5G034440 Rw6G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	136, 258
AclWI	GGATC	2 cut(s)	105, 210
AcoI	YGGCCR	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	4 cut(s)	133, 208, 217, 372
AluI	AGCT	4 cut(s)	133, 208, 217, 372
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	105, 210
Ama87I	CYCGRG	2 cut(s)	353, 395
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	4 cut(s)	89, 133, 214, 386
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	2 cut(s)	38, 143
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	22, 43
AvaI	CYCGRG	2 cut(s)	353, 395
AvaII	GGWCC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	311
BbvI	GCAGC	4 cut(s)	76, 120, 226, 373
BccI	CCATC	3 cut(s)	104, 320, 340
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	4 cut(s)	90, 134, 215, 387
BlsI	GCNGC	4 cut(s)	91, 135, 216, 388
Bme1390I	CCNGG	2 cut(s)	124, 272
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	2 cut(s)	353, 395
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	124, 272
BpmI	CTGGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	4 cut(s)	76, 120, 226, 373
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	128
BsiHKCI	CYCGRG	2 cut(s)	353, 395
BsiSI	CCGG	2 cut(s)	124, 200
BslFI	GGGAC	2 cut(s)	106, 274
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	106, 274
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	353, 395
Bsp143I	GATC	4 cut(s)	97, 162, 202, 391
BspACI	CCGC	2 cut(s)	136, 258
BspANI	GGCC	1 cut(s)	311
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	2 cut(s)	105, 210
BspQI	GCTCTTC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	161
BssMI	GATC	4 cut(s)	97, 162, 202, 391
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	31, 265
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	309, 384
BstKTI	GATC	4 cut(s)	100, 165, 205, 394
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	97, 162, 202, 391
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 214, 255
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	122, 270
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	76, 120, 226, 373
BstX2I	RGATCY	2 cut(s)	97, 391
BstYI	RGATCY	2 cut(s)	97, 391
BsuRI	GGCC	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	309, 384
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	220
CviJI	RGCY	9 cut(s)	133, 208, 217, 311, 325, 330, 372, 386, 401
CviKI_1	RGCY	9 cut(s)	133, 208, 217, 311, 325, 330, 372, 386, 401
DpnI	GATC	4 cut(s)	99, 164, 204, 393
DpnII	GATC	4 cut(s)	97, 162, 202, 391
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	268
Eco88I	CYCGRG	2 cut(s)	353, 395
EcoRII	CCWGG	1 cut(s)	270
EcoRV	GATATC	1 cut(s)	411
FaiI	YATR	3 cut(s)	182, 230, 305
FaqI	GGGAC	2 cut(s)	106, 274
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	4 cut(s)	90, 134, 215, 387
Fsp4HI	GCNGC	4 cut(s)	90, 134, 215, 387
FspBI	CTAG	1 cut(s)	433
GluI	GCNGC	4 cut(s)	90, 134, 215, 387
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	124, 200
HgaI	GACGC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	149, 224
HpaII	CCGG	2 cut(s)	124, 200
HphI	GGTGA	2 cut(s)	22, 43
Hpy166II	GTNNAC	2 cut(s)	76, 268
Hpy188I	TCNGA	3 cut(s)	102, 130, 345
Hpy188III	TCNNGA	6 cut(s)	43, 64, 95, 166, 353, 395
Hpy8I	GTNNAC	2 cut(s)	76, 268
Hpy99I	CGWCG	3 cut(s)	23, 31, 323
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	31, 265
HpyCH4V	TGCA	1 cut(s)	389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 214, 255
Kzo9I	GATC	4 cut(s)	97, 162, 202, 391
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	4 cut(s)	76, 120, 226, 373
MaeI	CTAG	1 cut(s)	433
MalI	GATC	4 cut(s)	99, 164, 204, 393
MboI	GATC	4 cut(s)	97, 162, 202, 391
MboII	GAAGA	3 cut(s)	79, 307, 310
MflI	RGATCY	2 cut(s)	97, 391
MlsI	TGGCCA	1 cut(s)	311
MluNI	TGGCCA	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	46, 205, 280, 349, 391
Mox20I	TGGCCA	1 cut(s)	311
MroXI	GAANNNNTTC	2 cut(s)	38, 143
MscI	TGGCCA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	311
MspA1I	CMGCKG	2 cut(s)	208, 258
MspI	CCGG	2 cut(s)	124, 200
MspR9I	CCNGG	2 cut(s)	124, 272
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	205, 214, 255
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	4 cut(s)	97, 162, 202, 391
PaeR7I	CTCGAG	2 cut(s)	353, 395
PciSI	GCTCTTC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 240
PdmI	GAANNNNTTC	2 cut(s)	38, 143
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	91, 135, 216, 388
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	97, 391
PvuII	CAGCTG	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	4 cut(s)	90, 134, 215, 387
Sau3AI	GATC	4 cut(s)	97, 162, 202, 391
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	124, 272
SetI	ASST	8 cut(s)	57, 135, 197, 210, 219, 273, 374, 434
SfcI	CTRYAG	1 cut(s)	387
Sfr274I	CTCGAG	2 cut(s)	353, 395
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	2 cut(s)	353, 395
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	353, 395
SmoI	CTYRAG	2 cut(s)	353, 395
SsiI	CCGC	2 cut(s)	136, 258
SspMI	CTAG	1 cut(s)	433
StyD4I	CCNGG	2 cut(s)	122, 270
TaaI	ACNGT	2 cut(s)	31, 265
TaqI	TCGA	8 cut(s)	18, 147, 152, 165, 234, 243, 354, 396
TfiI	GAWTC	1 cut(s)	224
TseI	GCWGC	4 cut(s)	89, 133, 214, 386
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	268
XhoI	CTCGAG	2 cut(s)	353, 395
XmnI	GAANNNNTTC	2 cut(s)	38, 143
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.