Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004510

Physical Location & Seq

Genomic Coordinates Reverse (-)

12835381 .. 12835917

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTTTCTTTTGGATTGAAATCACACAAGTGGGATGAGAATTTCCTTGATGACAACTTCTGGGGTGAATGGTCTGCCGGAGTGGTGCTTTGCAATGACCGCTACTTGTTTACTTTTGGCAATCGGAGTCCTAAACCCAGTATTAGCAAAGAACCCCTGCATGAGGAAGAAGTGCATGAGTCATCTTACTTGGATGATTATTATGACATTAATGAAGAAGAGGAGGAGGTTCCTGGAATTTATGTATTTGATCTTGAACGAGGTCAATGGCTTCCTGAACCAGTTCAGGGCTTCGAGACTAATGGAACCATCCTTCCCACCGTCTACAAGCCAAATCCAGAATTGTGTCATCCCCGACGGTTTTCCCCATACTTGTTCTGCATCGGAAATCATGACAACCGCAGGTTGACTGTGCTGTGGGATGGTCATGGCAGACATCCTACATCAATTGCTTGGTCCAAGTTTATACTCAATGCTAGTACTACTACCACTGATCAAACAATCCACTTCTCCGCCTATTTGCTGTCGGGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

178

Amino Acids

20.67

Weight (kDa)

4.9

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44310
fragaria_vesca	FvH4_7g00040
malus_domestica	MD02G1319800.v1.1
prunus_persica	Prupe.2G002300_v2.0.a1
pyrus_communis	pycom02g26780
rosa_chinensis	RchiOBHm_Chr1g0313211 RchiOBHm_Chr1g0331981 RchiOBHm_Chr4g0404011 RchiOBHm_Chr5g0065041
rosa_laevigata	RLG00000013113 RLG00000020975 RLG00000030815
rosa_multiflora	Rmu_sc0000104.1_g000006 Rmu_sc0003005.1_g000020 Rmu_sc0003720.1_g000017 Rmu_sc0022605.1_g000001 Rmu_sc0027690.1_g000003
rosa_roxburghii	Rroxscaffold_4G00332380
rosa_rugosa	Rorug06G0096100 RorugPtG0001600
rosa_samantha	Rh1AG001700 Rh1CG003700 Rh1CG006300 Rh1CG115200 Rh1DG001600 Rh5DG507900 Rh6BG517000 Rh6CG522900
rosa_wichuraiana	Rw1G000080 Rw4G006740 Rw5G034440 Rw6G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	3 cut(s)	100, 400, 513
AcsI	RAATTY	2 cut(s)	40, 237
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	2 cut(s)	163, 287
AgsI	TTSAA	2 cut(s)	19, 257
AjnI	CCWGG	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	298, 330
Alw26I	GTCTC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	40, 237
AseI	ATTAAT	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	456
BccI	CCATC	2 cut(s)	317, 416
BciT130I	CCWGG	1 cut(s)	234
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	393
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	2 cut(s)	231, 307
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 287
Bse1I	ACTGG	2 cut(s)	138, 281
Bse3DI	GCAATG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	234
BseGI	GGATG	6 cut(s)	40, 199, 309, 349, 427, 436
BseJI	GATNNNNATC	1 cut(s)	19
BseLI	CCNNNNNNNGG	2 cut(s)	163, 287
BseMI	GCAATG	1 cut(s)	100
BseNI	ACTGG	2 cut(s)	138, 281
BseRI	GAGGAG	2 cut(s)	236, 239
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	163, 287
BsmAI	GTCTC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	250, 493
BspACI	CCGC	3 cut(s)	100, 400, 513
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	231, 307
BspMI	ACCTGC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	138, 281
BssMI	GATC	2 cut(s)	250, 493
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	322, 360, 412
Bst6I	CTCTTC	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	6 cut(s)	40, 199, 309, 349, 427, 436
BstKTI	GATC	2 cut(s)	253, 496
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	2 cut(s)	250, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BtsCI	GGATG	6 cut(s)	40, 199, 309, 349, 427, 436
BtsIMutI	CAGTG	1 cut(s)	489
BveI	ACCTGC	1 cut(s)	393
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	4 cut(s)	161, 176, 392, 428
CviJI	RGCY	3 cut(s)	271, 291, 331
CviKI_1	RGCY	3 cut(s)	271, 291, 331
CviQI	GTAC	1 cut(s)	480
DpnI	GATC	2 cut(s)	252, 495
DpnII	GATC	2 cut(s)	250, 493
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	4 cut(s)	164, 179, 395, 431
FaiI	YATR	8 cut(s)	162, 177, 204, 243, 370, 393, 429, 467
FatI	CATG	4 cut(s)	160, 175, 391, 427
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	324
FokI	GGATG	6 cut(s)	47, 206, 296, 336, 423, 434
FspBI	CTAG	1 cut(s)	477
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	4 cut(s)	164, 179, 395, 431
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	2 cut(s)	127, 179
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	3 cut(s)	111, 325, 408
Hpy188I	TCNGA	2 cut(s)	126, 386
Hpy188III	TCNNGA	5 cut(s)	254, 275, 295, 338, 392
Hpy8I	GTNNAC	3 cut(s)	111, 325, 408
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	3 cut(s)	322, 360, 412
HpyCH4V	TGCA	4 cut(s)	93, 160, 175, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	164, 179, 395, 431
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	250, 493
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	477
MalI	GATC	2 cut(s)	252, 495
MboI	GATC	2 cut(s)	250, 493
MboII	GAAGA	3 cut(s)	179, 227, 230
MfeI	CAATTG	1 cut(s)	447
MluCI	AATT	4 cut(s)	40, 237, 341, 447
MlyI	GAGTC	2 cut(s)	136, 188
MnlI	CCTC	5 cut(s)	157, 214, 217, 220, 254
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	28
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	2 cut(s)	250, 493
NlaIII	CATG	4 cut(s)	164, 179, 395, 431
NlaIV	GGNNCC	2 cut(s)	231, 307
OliI	CACNNNNGTG	1 cut(s)	28
PagI	TCATGA	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	232
PleI	GAGTC	2 cut(s)	135, 187
PpsI	GAGTC	2 cut(s)	135, 187
PshBI	ATTAAT	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	231, 307
PspPI	GGNCC	1 cut(s)	456
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	210
Sau3AI	GATC	2 cut(s)	250, 493
Sau96I	GGNCC	1 cut(s)	456
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	2 cut(s)	136, 188
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	3 cut(s)	231, 265, 407
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	28
Sse9I	AATT	4 cut(s)	40, 237, 341, 447
SsiI	CCGC	3 cut(s)	100, 400, 513
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	3 cut(s)	322, 360, 412
TaqI	TCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	40, 237, 341, 447
TatI	WGTACW	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	456
VspI	ATTAAT	1 cut(s)	210
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	40, 237
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	477
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.