Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004510

Physical Location & Seq

Genomic Coordinates Forward (+)

438309 .. 438743

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG003700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGAGTGGTGATAATTGACGGAACGACGGTGAAGGACTTCGTGAGCGACGAGGTGCAGTTCAAGAAGAGCGTGGACGAGCGTTTTGCTGCTCTGGATCTGAACAACGATGGTGTTCTGTCCCGGTCGGAGCTGCGGAAAGCATTCGAGTCGATGAGATTGATCGAGACCCACTTCGGCATAGAAGTGGCGACCTCGCCGGATCAGCTGACGCAGCTCTACGATTCCATATTCGATAAGTTCGACTGCGACCAGAGCGGGACGGTGGATCTGGACGAGTTCAGGGAGGAGATGAAGAAGATCATGCTGGCCATCGCCGACGGGCTTGGCTCTTGCCCTATTCAGATGGCTCTCGAGGACGACCACCACAGCTTGCTCAAGCAGGCTGCAGATCTCGAGGCTTCCAAGATATCATCATCAGTTTCACACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

144

Amino Acids

15.99

Weight (kDa)

4.47

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	27 - 99	1.2e-11	EF-hand domain pair
EF-hand_1	PF00036	75 - 100	3.3e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44310
fragaria_vesca	FvH4_7g00040
malus_domestica	MD02G1319800.v1.1
prunus_persica	Prupe.2G002300_v2.0.a1
pyrus_communis	pycom02g26780
rosa_chinensis	RchiOBHm_Chr1g0313211 RchiOBHm_Chr1g0331981 RchiOBHm_Chr4g0404011 RchiOBHm_Chr5g0065041
rosa_laevigata	RLG00000013113 RLG00000020975 RLG00000030815
rosa_multiflora	Rmu_sc0000104.1_g000006 Rmu_sc0003005.1_g000020 Rmu_sc0003720.1_g000017 Rmu_sc0022605.1_g000001 Rmu_sc0027690.1_g000003
rosa_roxburghii	Rroxscaffold_4G00332380
rosa_rugosa	Rorug06G0096100 RorugPtG0001600
rosa_samantha	Rh1AG001700 Rh1CG003700 Rh1CG006300 Rh1CG115200 Rh1DG001600 Rh5DG507900 Rh6BG517000 Rh6CG522900
rosa_wichuraiana	Rw1G000080 Rw4G006740 Rw5G034440 Rw6G033590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	258
AciI	CCGC	2 cut(s)	136, 258
AclWI	GGATC	3 cut(s)	105, 210, 276
AcoI	YGGCCR	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	4 cut(s)	133, 208, 217, 372
AluI	AGCT	4 cut(s)	133, 208, 217, 372
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	105, 210, 276
Ama87I	CYCGRG	2 cut(s)	353, 395
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	4 cut(s)	89, 133, 214, 386
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	2 cut(s)	38, 143
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	22, 43
AvaI	CYCGRG	2 cut(s)	353, 395
BalI	TGGCCA	1 cut(s)	311
BbvI	GCAGC	4 cut(s)	76, 120, 226, 373
BccI	CCATC	3 cut(s)	104, 320, 340
BcgI	CGANNNNNNTGC	4 cut(s)	68, 102, 132, 166
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	4 cut(s)	90, 134, 215, 387
BlsI	GCNGC	4 cut(s)	91, 135, 216, 388
Bme1390I	CCNGG	1 cut(s)	124
BmeT110I	CYCGRG	2 cut(s)	353, 395
BmrFI	CCNGG	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	4 cut(s)	76, 120, 226, 373
BsgI	GTGCAG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	128
BsiHKCI	CYCGRG	2 cut(s)	353, 395
BsiSI	CCGG	2 cut(s)	124, 200
BslFI	GGGAC	2 cut(s)	106, 274
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	106, 274
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	353, 395
Bsp143I	GATC	6 cut(s)	97, 162, 202, 268, 300, 391
BspACI	CCGC	2 cut(s)	136, 258
BspANI	GGCC	1 cut(s)	311
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	3 cut(s)	105, 210, 276
BspQI	GCTCTTC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	258
BssMI	GATC	6 cut(s)	97, 162, 202, 268, 300, 391
Bst4CI	ACNGT	2 cut(s)	31, 265
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	309, 374, 384
BstKTI	GATC	6 cut(s)	100, 165, 205, 271, 303, 394
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	6 cut(s)	97, 162, 202, 268, 300, 391
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 214, 255
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	76, 120, 226, 373
BstX2I	RGATCY	3 cut(s)	97, 268, 391
BstYI	RGATCY	3 cut(s)	97, 268, 391
BsuRI	GGCC	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	298
Cac8I	GCNNGC	3 cut(s)	309, 374, 384
CseI	GACGC	1 cut(s)	220
CviAII	CATG	1 cut(s)	304
DpnI	GATC	6 cut(s)	99, 164, 204, 270, 302, 393
DpnII	GATC	6 cut(s)	97, 162, 202, 268, 300, 391
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	411
Eco88I	CYCGRG	2 cut(s)	353, 395
EcoRV	GATATC	1 cut(s)	411
FaeI	CATG	1 cut(s)	307
FaiI	YATR	3 cut(s)	182, 230, 305
FaqI	GGGAC	2 cut(s)	106, 274
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	4 cut(s)	90, 134, 215, 387
Fsp4HI	GCNGC	4 cut(s)	90, 134, 215, 387
FspBI	CTAG	1 cut(s)	433
GluI	GCNGC	4 cut(s)	90, 134, 215, 387
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	124, 200
HgaI	GACGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	2 cut(s)	149, 224
HpaII	CCGG	2 cut(s)	124, 200
HphI	GGTGA	2 cut(s)	22, 43
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	102, 130, 345
Hpy188III	TCNNGA	7 cut(s)	43, 64, 95, 166, 272, 353, 395
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	3 cut(s)	31, 53, 323
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	31, 265
HpyCH4V	TGCA	2 cut(s)	58, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 214, 255
Hsp92II	CATG	1 cut(s)	307
Kzo9I	GATC	6 cut(s)	97, 162, 202, 268, 300, 391
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	8 cut(s)	80, 137, 213, 257, 266, 268, 293, 368
Lsp1109I	GCAGC	4 cut(s)	76, 120, 226, 373
MaeI	CTAG	1 cut(s)	433
MalI	GATC	6 cut(s)	99, 164, 204, 270, 302, 393
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	6 cut(s)	97, 162, 202, 268, 300, 391
MboII	GAAGA	3 cut(s)	79, 307, 310
MflI	RGATCY	3 cut(s)	97, 268, 391
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	46, 205, 280, 349, 391
Mox20I	TGGCCA	1 cut(s)	311
MroXI	GAANNNNTTC	2 cut(s)	38, 143
MscI	TGGCCA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	2 cut(s)	124, 200
MspR9I	CCNGG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	205, 214, 255
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	6 cut(s)	97, 162, 202, 268, 300, 391
NlaIII	CATG	1 cut(s)	307
PaeR7I	CTCGAG	2 cut(s)	353, 395
PciSI	GCTCTTC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 240
PctI	GAATGC	1 cut(s)	143
PdmI	GAANNNNTTC	2 cut(s)	38, 143
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	91, 135, 216, 388
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	3 cut(s)	97, 268, 391
PvuII	CAGCTG	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	4 cut(s)	90, 134, 215, 387
Sau3AI	GATC	6 cut(s)	97, 162, 202, 268, 300, 391
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	7 cut(s)	57, 135, 197, 210, 219, 374, 434
SfcI	CTRYAG	1 cut(s)	387
Sfr274I	CTCGAG	2 cut(s)	353, 395
SlaI	CTCGAG	2 cut(s)	353, 395
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	3 cut(s)	353, 377, 395
SmoI	CTYRAG	3 cut(s)	353, 377, 395
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	2 cut(s)	136, 258
SspMI	CTAG	1 cut(s)	433
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	31, 265
TaqI	TCGA	7 cut(s)	147, 152, 165, 234, 243, 354, 396
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	224
TseI	GCWGC	4 cut(s)	89, 133, 214, 386
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	36
XhoI	CTCGAG	2 cut(s)	353, 395
XmnI	GAANNNNTTC	2 cut(s)	38, 143
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.