Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Forward (+)

18965068 .. 18967271

Gene Structure 2204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGGAAGAAATTGAAAAATCTGTGCCGACAGAGGAATCTCTGATGGAGAAGATCTCCGAGAAGATTCACCATCACGATTCGTCGTCATCGTCTGAATCCGAGTACGAGAAACCTGATTCTCCTTCGGCTGTGAAGGCGAAGATCTATCGTATGTTTGGCAGAGAGAAGCCTGTTCACAAGGTTCTCGGTGGTGGAAAGCCTGCTGATGTGTTCTTGTGGAGGGATAAAAAACTATCAGGTGCTGTTCTTGGTGTCGCGACTGCTATTTGGGTTCTGTTCGAGCTGGTTGAGTATCATTTGTTGAGTCTTTTGTGTCACATTTCGATACTCGCTCTTGGAGGCCTCTTTTTGTGGTCCAATGCTCACACACTTATCAACAAGACTTCACCACAAATTCCAGAAATCCATGTTCCCGAGGAGGCTTTCCTTGTGGTTGCTTCTTCTCTGAGAAACGAACTAAACCAAGCTTTTGTTATCCTACGAAGCATTGCTTTAGGAAGGGACCTAAAAAAATTCCTGATGGTTGTTGTCGGTCTATGGATCATCTCGGTGGTGGGCAATTGGTTCAATTTCCTGACTTTGGTGTACATTTGCTTCGTGATATTGCACACAGTCCCAATGTTGTATGAGAAACACGAGGACAAGGTTGATCCATTGGCAGAGAAAGCAATGAAGGAGTTGCAGAAACAGTATGTGGTTTTCGATGAAAAGGTTCTCTCTAAGATTCCCATTGCTTCTCTCAAGGCAAAGGCAAAATTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009628 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0080167 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

255

Amino Acids

28.69

Weight (kDa)

7.16

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	69 - 224	1.2e-58	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	260
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	551, 647
AcsI	RAATTY	2 cut(s)	396, 515
AfaI	GTAC	2 cut(s)	107, 590
AfiI	CCNNNNNNNGG	1 cut(s)	583
AgsI	TTSAA	2 cut(s)	17, 571
AluBI	AGCT	2 cut(s)	286, 470
AluI	AGCT	2 cut(s)	286, 470
AlwI	GGATC	2 cut(s)	551, 647
AlwNI	CAGNNNCTG	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	343
ApoI	RAATTY	2 cut(s)	396, 515
Asp700I	GAANNNNTTC	1 cut(s)	714
AspS9I	GGNCC	2 cut(s)	357, 505
AsuHPI	GGTGA	2 cut(s)	62, 381
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	357, 505
BarI	GAAGNNNNNNTAC	2 cut(s)	581, 613
BauI	CACGAG	1 cut(s)	638
BccI	CCATC	3 cut(s)	40, 81, 517
BglII	AGATCT	2 cut(s)	54, 144
Bme18I	GGWCC	2 cut(s)	357, 505
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	357, 505
BmiI	GGNNCC	1 cut(s)	506
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpuEI	CTTGAG	1 cut(s)	728
BsaJI	CCNNGG	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse3DI	GCAATG	3 cut(s)	489, 678, 732
BseDI	CCNNGG	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMI	GCAATG	3 cut(s)	489, 678, 732
BseMII	CTCAG	1 cut(s)	440
BseRI	GAGGAG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	416
BslFI	GGGAC	2 cut(s)	518, 602
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmFI	GGGAC	2 cut(s)	518, 602
BsnI	GGCC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	416
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	54, 144, 543, 652
Bsp68I	TCGCGA	1 cut(s)	260
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	551, 647
BsrDI	GCAATG	3 cut(s)	489, 678, 732
BsrGI	TGTACA	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	54, 144, 543, 652
BssSI	CACGAG	1 cut(s)	638
Bst2BI	CACGAG	1 cut(s)	638
Bst4CI	ACNGT	2 cut(s)	616, 693
BstAUI	TGTACA	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	449, 723
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	4 cut(s)	57, 147, 546, 655
BstMBI	GATC	4 cut(s)	54, 144, 543, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 668
BstUI	CGCG	1 cut(s)	260
BstX2I	RGATCY	2 cut(s)	54, 144
BstYI	RGATCY	2 cut(s)	54, 144
BsuRI	GGCC	1 cut(s)	345
BtuMI	TCGCGA	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	357, 505
Csp6I	GTAC	2 cut(s)	106, 589
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	7 cut(s)	131, 172, 202, 286, 345, 425, 470
CviKI_1	RGCY	7 cut(s)	131, 172, 202, 286, 345, 425, 470
CviQI	GTAC	2 cut(s)	106, 589
DdeI	CTNAG	2 cut(s)	449, 723
DpnI	GATC	4 cut(s)	56, 146, 545, 654
DpnII	GATC	4 cut(s)	54, 144, 543, 652
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	357, 505
Eco88I	CYCGRG	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	505
FaeI	CATG	1 cut(s)	413
FaiI	YATR	5 cut(s)	155, 411, 541, 630, 696
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FaqI	GGGAC	2 cut(s)	518, 602
FatI	CATG	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	413
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	7 cut(s)	38, 67, 80, 98, 119, 307, 727
HphI	GGTGA	2 cut(s)	62, 381
Hpy166II	GTNNAC	2 cut(s)	178, 589
Hpy188I	TCNGA	5 cut(s)	45, 61, 97, 103, 450
Hpy188III	TCNNGA	7 cut(s)	77, 259, 401, 416, 520, 577, 601
Hpy8I	GTNNAC	2 cut(s)	178, 589
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	4 cut(s)	130, 135, 495, 670
HpyCH4III	ACNGT	2 cut(s)	616, 693
HpyCH4V	TGCA	2 cut(s)	610, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 668
HpyF3I	CTNAG	2 cut(s)	449, 723
Hsp92II	CATG	1 cut(s)	413
Kzo9I	GATC	4 cut(s)	54, 144, 543, 652
LpnPI	CCDG	8 cut(s)	129, 186, 216, 225, 272, 414, 533, 590
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	4 cut(s)	56, 146, 545, 654
MboI	GATC	4 cut(s)	54, 144, 543, 652
MboII	GAAGA	5 cut(s)	20, 64, 76, 154, 435
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	2 cut(s)	54, 144
MluCI	AATT	6 cut(s)	12, 396, 515, 562, 571, 758
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	7 cut(s)	28, 216, 335, 356, 412, 415, 634
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	1 cut(s)	766
MslI	CAYNNNNRTG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	562
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	137, 668
NdeII	GATC	4 cut(s)	54, 144, 543, 652
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	1 cut(s)	506
NmuCI	GTSAC	1 cut(s)	317
NruI	TCGCGA	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	6 cut(s)	38, 67, 80, 98, 119, 727
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PpuMI	RGGWCCY	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	506
PspPI	GGNCC	2 cut(s)	357, 505
PspPPI	RGGWCCY	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	54, 144
RruI	TCGCGA	1 cut(s)	260
RsaI	GTAC	2 cut(s)	107, 590
RsaNI	GTAC	2 cut(s)	106, 589
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	766
Sau3AI	GATC	4 cut(s)	54, 144, 543, 652
Sau96I	GGNCC	2 cut(s)	357, 505
SchI	GAGTC	1 cut(s)	316
SetI	ASST	8 cut(s)	118, 186, 244, 288, 472, 510, 651, 717
SinI	GGWCC	2 cut(s)	357, 505
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
Sse9I	AATT	6 cut(s)	12, 396, 515, 562, 571, 758
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	1 cut(s)	5
StuI	AGGCCT	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	616, 693
TaqI	TCGA	3 cut(s)	282, 326, 705
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	6 cut(s)	12, 396, 515, 562, 571, 758
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	6 cut(s)	38, 67, 80, 98, 119, 727
Tru1I	TTAA	1 cut(s)	766
Tru9I	TTAA	1 cut(s)	766
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	689, 723
VpaK11BI	GGWCC	2 cut(s)	357, 505
XapI	RAATTY	2 cut(s)	396, 515
XmnI	GAANNNNTTC	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.