Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Reverse (-)

36834431 .. 36839263

Gene Structure 4833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0259000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCAGCCTCTGATTTACCAGAGGGGACTCTTCAGAACGTACTGGAGCAAGAGACCCTCAAGTGGGTCTTCGTTGGCGGCAAGGGTGGGGTTGGCAAAACGACGTGTAGCTCAATCCTCTCGATCCTTCTCGCCAGTGTCAGATCCTCTGTTTTGATTATCTCTACCGACCCTGCTCACAATCTCAGCGATGCTTTTCAGCAAAAGTTCACCAAGACTCCAACTTTGGTTAATGGGTTCCCCAATCTGTATGCCATGGAAGTGGATCCTACCGTTGAGCATGAAGACATTGGCGGAGAGAATGGAATGGATAGTTTGGTTTCGGAGCTAGCAAATGCTATTCCAGGGATTGATGAGGCCATGAGCTTTGCAGAGATGTTAAAATTGGTTCAAACAATGGATTATTCTGTTATTGTATTTGACACTGCACCGACTGGTCATACGCTTCGGCTATTGCAGTTTCCATCGACATTGGAGAAAGGTCTTGCAAAAGTGATGTCTTTGAAAAATAAATTTGGCGGTTTAATGAGTCAGATGACCCGCCTCTTTGGTGTTGATGATGAATTTGGAGAGGATGCGATTTTAGGAAAGCTTGAGAGCATGAAAGAAGTAATAGAGCAAGTTAATAAGCAATTCAAAGACCCGGACTTGACAACATTCGTTTGTGTTTGCATTCCTGAATTCCTGTCTCTCTATGAAACAGAGAGACTGGTGCAGGAACTCGCCAAATTTGAGATAGATACGCACAATATTATCATTAACCAAGTACTTTATGATGAAGAAGACTCGCAGTCCAAATTACTTAAAGCAAGAATGCGAATGCAACAAAAGTACCTTGACCAGTTCTACATGTTGTACGATGATTTTAACATAACCAAGCTCCCATTGCTGCCTGAAGAGGTTACTGGAGTGGAAGCTCTGAAAGCATTTTCACGCCATTTTCTGACACCGTATCAACCTTCCACCAGCACAGTGGAATCGTTAGAGCAAAGGGTGTCCACGCTAAGGCAGCAGTTGAAAGACACCGAAGCAGAGCTAGAAAGACTAAGAAAAGGAAAGCAAAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009628 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071944 GO:0080167 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

356

Amino Acids

39.93

Weight (kDa)

4.82

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArsA_ATPase	PF02374	21 - 313	1.8e-104	Anion-transporting ATPase
CbiA	PF01656	23 - 243	2.3e-09	CobQ/CobB/MinD/ParA nucleotide binding domain
AAA_31	PF13614	27 - 146	2.4e-09	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	78, 294, 519, 541
AclWI	GGATC	4 cut(s)	118, 138, 260, 273
AcsI	RAATTY	4 cut(s)	512, 563, 680, 728
AcuI	CTGAAG	2 cut(s)	17, 915
AfaI	GTAC	4 cut(s)	42, 768, 833, 857
AfiI	CCNNNNNNNGG	3 cut(s)	63, 64, 1005
AflIII	ACRYGT	2 cut(s)	104, 849
AgsI	TTSAA	4 cut(s)	392, 505, 637, 1018
AhdI	GACNNNNNGTC	1 cut(s)	790
AjiI	CACGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	7 cut(s)	111, 328, 366, 592, 880, 917, 1036
AluI	AGCT	7 cut(s)	111, 328, 366, 592, 880, 917, 1036
Alw26I	GTCTC	3 cut(s)	47, 693, 700
AlwI	GGATC	4 cut(s)	118, 138, 260, 273
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	357, 1065
ApeKI	GCWGC	3 cut(s)	5, 889, 1009
ApoI	RAATTY	4 cut(s)	512, 563, 680, 728
ArsI	GACNNNNNNTTYG	4 cut(s)	208, 240, 482, 514
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	1 cut(s)	202
AsuNHI	GCTAGC	1 cut(s)	328
BaeI	ACNNNNGTAYC	2 cut(s)	815, 848
BamHI	GGATCC	1 cut(s)	265
BbsI	GAAGAC	3 cut(s)	61, 291, 789
BbvI	GCAGC	3 cut(s)	17, 876, 1021
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	3 cut(s)	47, 693, 700
BfaI	CTAG	2 cut(s)	329, 1037
BisI	GCNGC	4 cut(s)	6, 79, 890, 1010
BlsI	GCNGC	4 cut(s)	7, 80, 891, 1011
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	2 cut(s)	345, 644
BmeRI	GACNNNNNGTC	1 cut(s)	790
BmgBI	CACGTC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	239, 267
BmrFI	CCNGG	2 cut(s)	345, 644
BmsI	GCATC	2 cut(s)	181, 565
BmtI	GCTAGC	1 cut(s)	332
BpiI	GAAGAC	3 cut(s)	61, 291, 789
BpmI	CTGGAG	2 cut(s)	65, 927
Bpu10I	CCTNAGC	1 cut(s)	1004
BpuEI	CTTGAG	2 cut(s)	44, 614
BpuMI	CCSGG	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	255, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 64, 1005
Bse1I	ACTGG	6 cut(s)	48, 135, 439, 714, 841, 910
Bse3DI	GCAATG	1 cut(s)	884
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	255, 344
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	3 cut(s)	63, 64, 1005
BseMI	GCAATG	1 cut(s)	884
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	6 cut(s)	48, 135, 439, 714, 841, 910
BseXI	GCAGC	3 cut(s)	17, 876, 1021
BsgI	GTGCAG	2 cut(s)	411, 734
BshFI	GGCC	2 cut(s)	359, 1067
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	63, 64, 1005
BsmAI	GTCTC	3 cut(s)	47, 693, 700
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	3 cut(s)	672, 819, 825
BsnI	GGCC	2 cut(s)	359, 1067
Bso31I	GGTCTC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	123, 143, 265
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	4 cut(s)	78, 294, 519, 541
BspANI	GGCC	2 cut(s)	359, 1067
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	239, 267
BspOI	GCTAGC	1 cut(s)	332
BspPI	GGATC	4 cut(s)	118, 138, 260, 273
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	884
BsrI	ACTGG	6 cut(s)	48, 135, 439, 714, 841, 910
BssECI	CCNNGG	2 cut(s)	255, 344
BssMI	GATC	3 cut(s)	123, 143, 265
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	274, 951, 973
Bst6I	CTCTTC	2 cut(s)	36, 891
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	185, 1004, 1046
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	580
BstKTI	GATC	3 cut(s)	126, 146, 268
BstMAI	GTCTC	3 cut(s)	47, 693, 700
BstMBI	GATC	3 cut(s)	123, 143, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	886, 923, 1009
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	2 cut(s)	343, 642
BstV1I	GCAGC	3 cut(s)	17, 876, 1021
BstV2I	GAAGAC	3 cut(s)	61, 291, 789
BstX2I	RGATCY	2 cut(s)	143, 265
BstXI	CCANNNNNNTGG	2 cut(s)	262, 973
BstYI	RGATCY	2 cut(s)	143, 265
BsuRI	GGCC	2 cut(s)	359, 1067
BtgI	CCRYGG	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	204
BtrI	CACGTC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	3 cut(s)	142, 423, 978
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	11
Csp6I	GTAC	4 cut(s)	41, 767, 832, 856
CviAII	CATG	5 cut(s)	256, 281, 361, 601, 850
CviQI	GTAC	4 cut(s)	41, 767, 832, 856
DdeI	CTNAG	3 cut(s)	185, 1004, 1046
DpnI	GATC	3 cut(s)	125, 145, 267
DpnII	GATC	3 cut(s)	123, 143, 265
DriI	GACNNNNNGTC	1 cut(s)	790
Eam1104I	CTCTTC	2 cut(s)	36, 891
Eam1105I	GACNNNNNGTC	1 cut(s)	790
EarI	CTCTTC	2 cut(s)	36, 891
EciI	GGCGGA	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	1067
Eco31I	GGTCTC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	17, 915
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	5 cut(s)	259, 284, 364, 604, 853
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	5 cut(s)	255, 280, 360, 600, 849
FauI	CCCGC	1 cut(s)	548
Fnu4HI	GCNGC	4 cut(s)	6, 79, 890, 1010
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	4 cut(s)	6, 79, 890, 1010
FspBI	CTAG	2 cut(s)	329, 1037
GluI	GCNGC	4 cut(s)	6, 79, 890, 1010
GsuI	CTGGAG	2 cut(s)	65, 927
HaeIII	GGCC	2 cut(s)	359, 1067
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	5 cut(s)	259, 284, 364, 604, 853
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	28, 217, 529, 785, 977
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	210, 999
Hpy188I	TCNGA	7 cut(s)	13, 36, 143, 325, 534, 921, 945
Hpy188III	TCNNGA	2 cut(s)	121, 677
Hpy8I	GTNNAC	2 cut(s)	210, 999
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	137, 969
HpyCH4III	ACNGT	3 cut(s)	274, 951, 973
HpyCH4IV	ACGT	2 cut(s)	39, 104
HpyCH4V	TGCA	7 cut(s)	371, 428, 457, 488, 672, 715, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	886, 923, 1009
HpyF3I	CTNAG	3 cut(s)	185, 1004, 1046
HpySE526I	ACGT	2 cut(s)	39, 104
Hsp92II	CATG	5 cut(s)	259, 284, 364, 604, 853
Kzo9I	GATC	3 cut(s)	123, 143, 265
LmnI	GCTCC	3 cut(s)	46, 325, 885
Lsp1109I	GCAGC	3 cut(s)	17, 876, 1021
LweI	GCATC	2 cut(s)	181, 565
MaeI	CTAG	2 cut(s)	329, 1037
MaeII	ACGT	2 cut(s)	39, 104
MaeIII	GTNAC	1 cut(s)	901
MalI	GATC	3 cut(s)	125, 145, 267
MboI	GATC	3 cut(s)	123, 143, 265
MboII	GAAGA	6 cut(s)	23, 61, 296, 791, 794, 908
MflI	RGATCY	2 cut(s)	143, 265
MluCI	AATT	7 cut(s)	383, 512, 563, 632, 680, 728, 797
MlyI	GAGTC	4 cut(s)	22, 211, 538, 779
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	9 cut(s)	16, 19, 68, 128, 157, 349, 554, 565, 892
MseI	TTAA	7 cut(s)	231, 380, 524, 624, 759, 804, 867
MslI	CAYNNNNRTG	1 cut(s)	260
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	345, 644
Mva1269I	GAATGC	3 cut(s)	672, 819, 825
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	886, 923, 1009
NciI	CCSGG	1 cut(s)	644
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	3 cut(s)	123, 143, 265
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	5 cut(s)	259, 284, 364, 604, 853
NlaIV	GGNNCC	2 cut(s)	239, 267
NspI	RCATGY	1 cut(s)	853
PceI	AGGCCT	1 cut(s)	1067
PciI	ACATGT	1 cut(s)	849
PctI	GAATGC	3 cut(s)	672, 819, 825
PfeI	GAWTC	1 cut(s)	977
PkrI	GCNGC	4 cut(s)	7, 80, 891, 1011
PleI	GAGTC	4 cut(s)	22, 211, 537, 779
PpsI	GAGTC	4 cut(s)	22, 211, 537, 779
PscI	ACATGT	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	239, 267
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	143, 265
RsaI	GTAC	4 cut(s)	42, 768, 833, 857
RsaNI	GTAC	4 cut(s)	41, 767, 832, 856
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	7 cut(s)	231, 380, 524, 624, 759, 804, 867
SatI	GCNGC	4 cut(s)	6, 79, 890, 1010
Sau3AI	GATC	3 cut(s)	123, 143, 265
ScaI	AGTACT	1 cut(s)	768
SchI	GAGTC	4 cut(s)	22, 211, 538, 779
ScrFI	CCNGG	2 cut(s)	345, 644
SfaNI	GCATC	2 cut(s)	181, 565
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	59, 593
SmoI	CTYRAG	2 cut(s)	59, 593
Sse9I	AATT	7 cut(s)	383, 512, 563, 632, 680, 728, 797
SseBI	AGGCCT	1 cut(s)	1067
SsiI	CCGC	4 cut(s)	78, 294, 519, 541
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	2 cut(s)	329, 1037
StuI	AGGCCT	1 cut(s)	1067
StyD4I	CCNGG	2 cut(s)	343, 642
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	274, 951, 973
TaiI	ACGT	2 cut(s)	42, 107
TaqI	TCGA	2 cut(s)	122, 467
TasI	AATT	7 cut(s)	383, 512, 563, 632, 680, 728, 797
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	977
Tru1I	TTAA	7 cut(s)	231, 380, 524, 624, 759, 804, 867
Tru9I	TTAA	7 cut(s)	231, 380, 524, 624, 759, 804, 867
TscAI	CASTG	3 cut(s)	142, 430, 978
TseI	GCWGC	3 cut(s)	5, 889, 1009
TspDTI	ATGAA	5 cut(s)	297, 576, 617, 711, 792
TspRI	CASTG	3 cut(s)	142, 430, 978
XapI	RAATTY	4 cut(s)	512, 563, 680, 728
XceI	RCATGY	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XspI	CTAG	2 cut(s)	329, 1037
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.