Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Forward (+)

22286321 .. 22288554

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G178800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTGACCAGTCGGAGAGTGCCGGTTCGACGGTGGAGCACGAGAAGTCACTGATGGAGAAGATCAGCGAGAAGATCCACGATCATAACTCGTCGTCTTCGTCGTCATCTGACTCGGATAACGAGAAACCGGAGTCGCCCAAGTCTGAGAAGCCCAAGGTTTTCAGGATTTTCGGGAGGGAGAAACCAGTTCACCATGTTTTCGGTGGAGGAAAGCCTGCTGATGTGTTCTTGTGGAGAAACAAGAAGGTTTCAGCTGGTGTTCTTGGTGGAGCCACTGCAGTCTGGGTCCTTTTTGAGTTGCTTGAGTACCACCTACTTACTCTTGTTGGCCACATTTTGATTGGTACCCTTGCGGTCTTGTTCCTCTGGTCCAATGCTCATTCTTTTATCCACAAGACTCCACCTCGCATCCCAGAAGTTCATCTTCCTGAGGAACCATTCCTGCAGGTTGCTTCTGAGCTGAGACTTCAAATCAACTGGGCTTTTGCGGTCCTTCATGATATTGCATCTGGCAGAGAATTGAAGAAATTCCTGATCGTTATTGCTGGCTTGTGGGTTCTTTCAATTGTGGGGACTTGGTGCAATTTCTTGACCTTGTTTTACATATCTTTTGTTTTGCTGCACACGGTGCCTGTCATTTATGAGAAGTATGAAGACAAGATAGACCCATTTGCAGAGAAGGCAACTATTGAATTCAAAAAGCACTATGCAGTGTTTGATGCCAAGGTTCTCAGTAAGATTCCGCAGGGGCTGAAAAACAAGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009628 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071944 GO:0080167 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

258

Amino Acids

28.97

Weight (kDa)

7.88

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	2 cut(s)	347, 631
AciI	CCGC	3 cut(s)	356, 491, 746
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	530, 695
AdeI	CACNNNGTG	1 cut(s)	631
AfaI	GTAC	2 cut(s)	311, 349
AgsI	TTSAA	5 cut(s)	473, 526, 567, 695, 700
AluBI	AGCT	2 cut(s)	257, 463
AluI	AGCT	2 cut(s)	257, 463
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	754
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	622
ApoI	RAATTY	2 cut(s)	530, 695
Asp700I	GAANNNNTTC	1 cut(s)	530
Asp718I	GGTACC	1 cut(s)	347
AspS9I	GGNCC	3 cut(s)	289, 372, 493
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	289, 372, 493
AxyI	CCTNAGG	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	2 cut(s)	347, 631
BauI	CACGAG	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	90, 663
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	460
BfmI	CTRYAG	2 cut(s)	279, 446
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	624
Bme18I	GGWCC	3 cut(s)	289, 372, 493
BmgT120I	GGNCC	3 cut(s)	289, 372, 493
BmiI	GGNNCC	5 cut(s)	274, 290, 349, 438, 633
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	3 cut(s)	420, 518, 712
BmuI	ACTGGG	1 cut(s)	490
BpiI	GAAGAC	2 cut(s)	90, 663
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	156, 726
BsaWI	WCCGGW	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	3 cut(s)	10, 188, 485
Bse21I	CCTNAGG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	156, 726
BseGI	GGATG	1 cut(s)	411
BseMII	CTCAG	5 cut(s)	138, 423, 450, 455, 748
BseNI	ACTGG	3 cut(s)	10, 188, 485
BseXI	GCAGC	1 cut(s)	609
BsgI	GTGCAG	1 cut(s)	608
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	2 cut(s)	347, 631
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	24, 131
BslFI	GGGAC	1 cut(s)	589
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	63, 75, 82, 537
BspACI	CCGC	3 cut(s)	356, 491, 746
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	5 cut(s)	139, 424, 451, 456, 747
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	5 cut(s)	274, 290, 349, 438, 633
BspMAI	CTGCAG	2 cut(s)	283, 450
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	2 cut(s)	347, 631
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	10, 188, 485
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	156, 726
BssMI	GATC	4 cut(s)	63, 75, 82, 537
BssSI	CACGAG	1 cut(s)	41
BssT1I	CCWWGG	2 cut(s)	156, 726
Bst2BI	CACGAG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	34, 631
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstC8I	GCNNGC	2 cut(s)	219, 550
BstDEI	CTNAG	6 cut(s)	147, 432, 459, 464, 734, 771
BstF5I	GGATG	1 cut(s)	411
BstKTI	GATC	4 cut(s)	66, 78, 85, 540
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	63, 75, 82, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	631, 683
BstSFI	CTRYAG	2 cut(s)	279, 446
BstV1I	GCAGC	1 cut(s)	609
BstV2I	GAAGAC	2 cut(s)	90, 663
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	411
BtsI	GCAGTG	2 cut(s)	276, 720
BtsIMutI	CAGTG	3 cut(s)	50, 276, 720
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	219, 550
CaiI	CAGNNNCTG	1 cut(s)	754
CciI	TCATGA	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	3 cut(s)	289, 372, 493
Csp6I	GTAC	2 cut(s)	310, 348
CviAII	CATG	2 cut(s)	197, 500
CviQI	GTAC	2 cut(s)	310, 348
DdeI	CTNAG	6 cut(s)	147, 432, 459, 464, 734, 771
DpnI	GATC	4 cut(s)	65, 77, 84, 539
DpnII	GATC	4 cut(s)	63, 75, 82, 537
DraIII	CACNNNGTG	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	156, 726
Eco47I	GGWCC	3 cut(s)	289, 372, 493
Eco81I	CCTNAGG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	695
EcoT14I	CCWWGG	2 cut(s)	156, 726
ErhI	CCWWGG	2 cut(s)	156, 726
FaeI	CATG	2 cut(s)	200, 503
FaiI	YATR	7 cut(s)	87, 198, 501, 608, 645, 654, 711
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	2 cut(s)	196, 499
Fnu4HI	GCNGC	1 cut(s)	623
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	623
GluI	GCNGC	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	2 cut(s)	24, 131
Hin1II	CATG	2 cut(s)	200, 503
HinfI	GANTC	4 cut(s)	113, 134, 400, 742
HpaII	CCGG	2 cut(s)	24, 131
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	5 cut(s)	16, 112, 118, 148, 460
Hpy188III	TCNNGA	6 cut(s)	166, 175, 431, 500, 535, 592
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	3 cut(s)	34, 97, 106
HpyAV	CCTTC	3 cut(s)	241, 506, 676
HpyCH4III	ACNGT	2 cut(s)	34, 631
HpyCH4V	TGCA	7 cut(s)	281, 448, 509, 585, 625, 677, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	631, 683
HpyF3I	CTNAG	6 cut(s)	147, 432, 459, 464, 734, 771
Hsp92II	CATG	2 cut(s)	200, 503
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	4 cut(s)	63, 75, 82, 537
LmnI	GCTCC	2 cut(s)	37, 272
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	3 cut(s)	420, 518, 712
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	4 cut(s)	65, 77, 84, 539
MboI	GATC	4 cut(s)	63, 75, 82, 537
MboII	GAAGA	6 cut(s)	73, 85, 90, 419, 538, 668
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	5 cut(s)	521, 530, 567, 586, 695
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	3 cut(s)	107, 143, 394
MnlI	CCTC	6 cut(s)	171, 203, 377, 417, 427, 759
Mox20I	TGGCCA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	2 cut(s)	24, 131
MunI	CAATTG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	631, 683
NdeII	GATC	4 cut(s)	63, 75, 82, 537
NlaIII	CATG	2 cut(s)	200, 503
NlaIV	GGNNCC	5 cut(s)	274, 290, 349, 438, 633
NmuCI	GTSAC	1 cut(s)	48
PagI	TCATGA	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 101
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	742
PkrI	GCNGC	1 cut(s)	624
PleI	GAGTC	3 cut(s)	107, 142, 394
PpsI	GAGTC	3 cut(s)	107, 142, 394
PpuMI	RGGWCCY	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	289
PspN4I	GGNNCC	5 cut(s)	274, 290, 349, 438, 633
PspPI	GGNCC	3 cut(s)	289, 372, 493
PspPPI	RGGWCCY	1 cut(s)	289
PstI	CTGCAG	2 cut(s)	283, 450
PstNI	CAGNNNCTG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	311, 349
RsaNI	GTAC	2 cut(s)	310, 348
SatI	GCNGC	1 cut(s)	623
Sau3AI	GATC	4 cut(s)	63, 75, 82, 537
Sau96I	GGNCC	3 cut(s)	289, 372, 493
SbfI	CCTGCAGG	1 cut(s)	450
SchI	GAGTC	3 cut(s)	107, 143, 394
SdaI	CCTGCAGG	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	3 cut(s)	420, 518, 712
SfcI	CTRYAG	2 cut(s)	279, 446
SinI	GGWCC	3 cut(s)	289, 372, 493
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse8387I	CCTGCAGG	1 cut(s)	450
Sse9I	AATT	5 cut(s)	521, 530, 567, 586, 695
SsiI	CCGC	3 cut(s)	356, 491, 746
StyI	CCWWGG	2 cut(s)	156, 726
TaaI	ACNGT	2 cut(s)	34, 631
TaqI	TCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	521, 530, 567, 586, 695
TfiI	GAWTC	1 cut(s)	742
TscAI	CASTG	3 cut(s)	57, 283, 720
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	1 cut(s)	622
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	3 cut(s)	413, 488, 669
TspRI	CASTG	3 cut(s)	57, 283, 720
VpaK11BI	GGWCC	3 cut(s)	289, 372, 493
XapI	RAATTY	2 cut(s)	530, 695
XcmI	CCANNNNNNNNNTGG	2 cut(s)	203, 341
XmnI	GAANNNNTTC	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.