Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Reverse (-)

11973812 .. 11976682

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG158900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGGATGAGCATAAGGAGGAAGTGAGGGCGGAGTCGTTGATGGAGAAGATCGAGGAGAAGATCCACGGCCACTACGATTCGCCGGCGCCGGAAGTCGTGCGCGAGAAGAGCGGCGGCGTTTCGCCGAGGTCGATGAAGGACAAGGTTTACAGGATCTTCGGCAGGGAAAAGCCTGTGCATCATATCTTTGGTGGTGGAAAGTTGGCGGATGTTTTCCTGTGGAGGGATAAGAAGCTGTCGGGTGGTATTCTTGGTGGAGCAACAGTGATGTGGGTTCTCTTTGAATTGCTTGAATACCACCTGCTCACTTTGGTCGCGCACCTCTTGATTGTTGCGATAGCAGCATTCTTCTTGTGGTCCAATGCTTTAACATTCATTAACAAGTCTCCACCCAAGATTCCAGATATTCAAATTCCAGAGAAGCCGTTTCTACAGATTGTCTCTGCAATTACATTTGAGATCAACCGGGCTCTTGTTGTCATCAGGGATATAGCTTCAGGGAAGGATCTGAAGCAGTTCCTCTCTGTATGTTTGCTGCTCTCTTGTGCTATTTCTTTTCATTTTCAGTTGATGTTGTTGGTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

196

Amino Acids

22.13

Weight (kDa)

8.51

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	70 - 183	8.2e-35	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	2 cut(s)	105, 320
AciI	CCGC	5 cut(s)	5, 32, 114, 117, 209
AclWI	GGATC	3 cut(s)	58, 164, 516
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	2 cut(s)	483, 533
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	287, 296, 413
AluBI	AGCT	2 cut(s)	238, 497
AluI	AGCT	2 cut(s)	238, 497
Alw26I	GTCTC	2 cut(s)	393, 448
AlwI	GGATC	3 cut(s)	58, 164, 516
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	344, 538
ApoI	RAATTY	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	3 cut(s)	91, 105, 322
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	356, 525
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	2 cut(s)	85, 412
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	393, 448
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	4 cut(s)	115, 118, 345, 539
BlsI	GCNGC	4 cut(s)	116, 119, 346, 540
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	67, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	67, 128
BseGI	GGATG	2 cut(s)	13, 217
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	356, 525
Bsh1236I	CGCG	2 cut(s)	105, 320
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	88
BsiSI	CCGG	3 cut(s)	86, 92, 469
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	393, 448
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	5 cut(s)	51, 63, 156, 462, 508
BspACI	CCGC	5 cut(s)	5, 32, 114, 117, 209
BspANI	GGCC	1 cut(s)	72
BspFNI	CGCG	2 cut(s)	105, 320
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	58, 164, 516
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	67, 128
BssMI	GATC	5 cut(s)	51, 63, 156, 462, 508
BssNI	GRCGYC	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	2 cut(s)	13, 217
BstFNI	CGCG	2 cut(s)	105, 320
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	3 cut(s)	91, 105, 322
BstKTI	GATC	5 cut(s)	54, 66, 159, 465, 511
BstMAI	GTCTC	2 cut(s)	393, 448
BstMBI	GATC	5 cut(s)	51, 63, 156, 462, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 344
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	1 cut(s)	434
BstUI	CGCG	2 cut(s)	105, 320
BstV1I	GCAGC	2 cut(s)	356, 525
BstX2I	RGATCY	3 cut(s)	63, 156, 508
BstYI	RGATCY	3 cut(s)	63, 156, 508
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	13, 217
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	3 cut(s)	91, 105, 322
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	360
CviJI	RGCY	6 cut(s)	72, 175, 238, 427, 473, 497
CviKI_1	RGCY	6 cut(s)	72, 175, 238, 427, 473, 497
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	5 cut(s)	53, 65, 158, 464, 510
DpnII	GATC	5 cut(s)	51, 63, 156, 462, 508
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	3 cut(s)	20, 47, 224
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	2 cut(s)	483, 533
EcoT38I	GRGCYC	1 cut(s)	475
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
FaiI	YATR	4 cut(s)	15, 186, 494, 532
Fnu4HI	GCNGC	4 cut(s)	115, 118, 345, 539
FokI	GGATG	2 cut(s)	20, 224
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	4 cut(s)	115, 118, 345, 539
GlaI	GCGC	3 cut(s)	90, 104, 321
GluI	GCNGC	4 cut(s)	115, 118, 345, 539
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	3 cut(s)	86, 92, 469
HhaI	GCGC	3 cut(s)	91, 105, 322
Hin1I	GRCGYC	1 cut(s)	89
Hin6I	GCGC	3 cut(s)	89, 103, 320
HinP1I	GCGC	3 cut(s)	89, 103, 320
HinfI	GANTC	3 cut(s)	35, 80, 400
HpaII	CCGG	3 cut(s)	86, 92, 469
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	3 cut(s)	328, 404, 419
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	133, 499
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	181, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 344
Hsp92I	GRCGYC	1 cut(s)	89
HspAI	GCGC	3 cut(s)	89, 103, 320
KasI	GGCGCC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Kzo9I	GATC	5 cut(s)	51, 63, 156, 462, 508
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	2 cut(s)	356, 525
LweI	GCATC	1 cut(s)	190
MalI	GATC	5 cut(s)	53, 65, 158, 464, 510
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	5 cut(s)	51, 63, 156, 462, 508
MboII	GAAGA	5 cut(s)	61, 73, 121, 151, 343
MflI	RGATCY	3 cut(s)	63, 156, 508
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	3 cut(s)	287, 414, 450
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	7 cut(s)	13, 21, 49, 123, 219, 335, 533
MreI	CGCCGGCG	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	2 cut(s)	371, 381
MspI	CCGG	3 cut(s)	86, 92, 469
MspR9I	CCNGG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	347
MvnI	CGCG	2 cut(s)	105, 320
MwoI	GCNNNNNNNGC	2 cut(s)	111, 344
NaeI	GCCGGC	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	5 cut(s)	51, 63, 156, 462, 508
NgoMIV	GCCGGC	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	90
NmeAIII	GCCGAG	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 131
PctI	GAATGC	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	80, 400
PkrI	GCNGC	4 cut(s)	116, 119, 346, 540
PleI	GAGTC	1 cut(s)	43
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	3 cut(s)	63, 156, 508
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	371, 381
SatI	GCNGC	4 cut(s)	115, 118, 345, 539
Sau3AI	GATC	5 cut(s)	51, 63, 156, 462, 508
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	6 cut(s)	134, 150, 240, 306, 327, 499
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	434
SfoI	GGCGCC	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	360
Sse9I	AATT	3 cut(s)	287, 414, 450
SsiI	CCGC	5 cut(s)	5, 32, 114, 117, 209
SspDI	GGCGCC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	54, 134
TasI	AATT	3 cut(s)	287, 414, 450
TauI	GCSGC	2 cut(s)	117, 120
TfiI	GAWTC	2 cut(s)	80, 400
Tru1I	TTAA	2 cut(s)	371, 381
Tru9I	TTAA	2 cut(s)	371, 381
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	2 cut(s)	344, 538
TspDTI	ATGAA	3 cut(s)	152, 367, 551
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.