Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Reverse (-)

13775873 .. 13778172

Gene Structure 2300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG158300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGGATGAGCATAAGGAGGAAGTGAGGGCGGAGTCTTTGATGGAGAAGATCGAGGAGAAGATCCACGGCCACCACGATTCGCCGGCGCCGGAAGTCGTGCGCGAGAAGAGCGGCGGCGTTTCGCCGAGTTCGTTGAAGGACAAGGTTTACAGGATCTTCGGCAGGGAAAAGCCTGTGCATCATGTCTTTGGTGGTGGAAAGTTGGCTGATGTTTTCCTGTGGAGGGATAAGAAGCTGTCGGGAGGTATTCTTGGTGGAGCAACAGTGATGTGGGTTCTCTTTGAATTGCTTGAATACCATCTGCTCACTTTGGTCGCGCACCTCTTGATTGTTGCGATAGCAGCATTCTTCTTGTGGTCCAATGCTTTAACATTCATTAACAAGTCTCCACCCAAGATTCCAGATATTCAAATTCCAGAGAAGCCGTTTCTACAGATTGTCTCTGCAATTACATTTGAGATCAACCGGGCTCTTGTTGTCATCAGGGATATAGCTTCAGGGAAGGATCTGAAGAAGTTCCTCTCTGTGATTGCTGGTCTATGGATTGTGTCTATCTTGGGAAAGTCTTATAACTTCTTGACCCTGGTTTACATAGGTGAGGACATTACAAATGTGTGTATTAGTTATGGACTTATGGCCAATACTTCTATCTGTGTCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

222

Amino Acids

24.73

Weight (kDa)

7.1

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	70 - 200	5.5e-44	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	2 cut(s)	105, 320
AciI	CCGC	4 cut(s)	5, 32, 114, 117
AclWI	GGATC	3 cut(s)	58, 164, 516
AcoI	YGGCCR	2 cut(s)	70, 639
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	2 cut(s)	483, 533
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	139, 287, 296, 413
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	2 cut(s)	238, 497
AluI	AGCT	2 cut(s)	238, 497
Alw26I	GTCTC	2 cut(s)	393, 448
AlwI	GGATC	3 cut(s)	58, 164, 516
AoxI	GGCC	2 cut(s)	70, 639
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	3 cut(s)	91, 105, 322
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	2 cut(s)	37, 309
BceAI	ACGGC	2 cut(s)	85, 412
BciT130I	CCWGG	1 cut(s)	587
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	393, 448
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	92
BisI	GCNGC	3 cut(s)	115, 118, 345
BlsI	GCNGC	3 cut(s)	116, 119, 346
Bme1390I	CCNGG	2 cut(s)	470, 587
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	470, 587
BmsI	GCATC	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	67, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	2 cut(s)	67, 585
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	105, 320
BshFI	GGCC	2 cut(s)	72, 641
BshNI	GGYRCC	1 cut(s)	88
BsiSI	CCGG	3 cut(s)	86, 92, 469
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	393, 448
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	72, 641
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	5 cut(s)	51, 63, 156, 462, 508
BspACI	CCGC	4 cut(s)	5, 32, 114, 117
BspANI	GGCC	2 cut(s)	72, 641
BspFNI	CGCG	2 cut(s)	105, 320
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	3 cut(s)	58, 164, 516
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	67, 585
BssMI	GATC	5 cut(s)	51, 63, 156, 462, 508
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	2 cut(s)	105, 320
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	3 cut(s)	91, 105, 322
BstKTI	GATC	5 cut(s)	54, 66, 159, 465, 511
BstMAI	GTCTC	2 cut(s)	393, 448
BstMBI	GATC	5 cut(s)	51, 63, 156, 462, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 344
BstNI	CCWGG	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	468, 585
BstSFI	CTRYAG	1 cut(s)	434
BstUI	CGCG	2 cut(s)	105, 320
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	3 cut(s)	63, 156, 508
BstYI	RGATCY	3 cut(s)	63, 156, 508
BsuRI	GGCC	2 cut(s)	72, 641
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	3 cut(s)	91, 105, 322
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	360
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	8 cut(s)	72, 175, 209, 238, 427, 473, 497, 641
CviKI_1	RGCY	8 cut(s)	72, 175, 209, 238, 427, 473, 497, 641
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	5 cut(s)	53, 65, 158, 464, 510
DpnII	GATC	5 cut(s)	51, 63, 156, 462, 508
EaeI	YGGCCR	2 cut(s)	70, 639
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	2 cut(s)	20, 47
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	2 cut(s)	483, 533
EcoRII	CCWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	475
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
FaeI	CATG	1 cut(s)	188
FaiI	YATR	8 cut(s)	15, 186, 494, 544, 573, 596, 630, 638
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	115, 118, 345
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	3 cut(s)	115, 118, 345
GlaI	GCGC	3 cut(s)	90, 104, 321
GluI	GCNGC	3 cut(s)	115, 118, 345
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	72, 641
HapII	CCGG	3 cut(s)	86, 92, 469
HhaI	GCGC	3 cut(s)	91, 105, 322
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	3 cut(s)	89, 103, 320
HinP1I	GCGC	3 cut(s)	89, 103, 320
HinfI	GANTC	3 cut(s)	35, 80, 400
HpaII	CCGG	3 cut(s)	86, 92, 469
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	151, 592
Hpy188I	TCNGA	2 cut(s)	513, 668
Hpy188III	TCNNGA	5 cut(s)	243, 328, 404, 419, 580
Hpy8I	GTNNAC	2 cut(s)	151, 592
HpyAV	CCTTC	2 cut(s)	133, 499
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	181, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 344
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	3 cut(s)	89, 103, 320
KasI	GGCGCC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Kzo9I	GATC	5 cut(s)	51, 63, 156, 462, 508
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	1 cut(s)	190
MalI	GATC	5 cut(s)	53, 65, 158, 464, 510
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	5 cut(s)	51, 63, 156, 462, 508
MboII	GAAGA	6 cut(s)	61, 73, 121, 151, 343, 526
MflI	RGATCY	3 cut(s)	63, 156, 508
MhlI	GDGCHC	1 cut(s)	475
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	3 cut(s)	287, 414, 450
MluNI	TGGCCA	1 cut(s)	641
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	8 cut(s)	13, 21, 49, 219, 239, 335, 533, 595
Mox20I	TGGCCA	1 cut(s)	641
MreI	CGCCGGCG	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	2 cut(s)	371, 381
Msp20I	TGGCCA	1 cut(s)	641
MspI	CCGG	3 cut(s)	86, 92, 469
MspR9I	CCNGG	2 cut(s)	470, 587
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	2 cut(s)	105, 320
MwoI	GCNNNNNNNGC	2 cut(s)	111, 344
NaeI	GCCGGC	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	5 cut(s)	51, 63, 156, 462, 508
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	90
NmeAIII	GCCGAG	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 131
PctI	GAATGC	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	80, 400
PkrI	GCNGC	3 cut(s)	116, 119, 346
PleI	GAGTC	1 cut(s)	43
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	3 cut(s)	63, 156, 508
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	371, 381
SatI	GCNGC	3 cut(s)	115, 118, 345
Sau3AI	GATC	5 cut(s)	51, 63, 156, 462, 508
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	470, 587
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	6 cut(s)	150, 240, 250, 327, 499, 601
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	434
SfoI	GGCGCC	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	360
Sse9I	AATT	3 cut(s)	287, 414, 450
SsiI	CCGC	4 cut(s)	5, 32, 114, 117
SspDI	GGCGCC	1 cut(s)	88
StyD4I	CCNGG	2 cut(s)	468, 585
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	287, 414, 450
TauI	GCSGC	2 cut(s)	117, 120
TfiI	GAWTC	2 cut(s)	80, 400
Tru1I	TTAA	2 cut(s)	371, 381
Tru9I	TTAA	2 cut(s)	371, 381
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.