Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Forward (+)

10994673 .. 10996272

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCGATGAGAAGGAGCACGCTGGATCGCCGGTGGAGGATAAGCCATCGCTGTTGGAGAAGATAGGCGACAAGATCCACGTCGGTGATCACGATTCGTCGTCTTCCTCGTCTTCCGACTCGGATAACGAGAAATCGGAGAAGAAGACCGAGTCGGTGAAGGCCAAGGTTTTCCGGATTTTCGGCCGTGAGAGGCCGGTTCACCATGTGCTCGGCGGTGGAAAGCCTGCTGATGTGTTCTTGTGGAGAAACAAGAAGGTTTCGGCTGGAGTTCTCGGCGGAACCACCGCCATCTGGGTCCTCTTCGAGTTGCTTGAGTACCACCTGCTTACACTTGTTGGCCACATTCTAATTGGTGCCCTGGTAATCTTGTTCCTCTGGTCCAATGCCCATGCGTTTATCCACAAGACTCCCCCTCATATCCCGAAAGTTCACCTTCCTGAAGAACCATTCCTGCAGGTTGCATCTGAGCTGAGAGTTCAAATCAACTGTGCATTTGCACTGCTTCATGATATTGCATCTGGGAGAGACTTGAAAAAATTCCTCGCTGTTGTTGCTGGCTTGTGGGTTCTATCTGTTGTGGGCAAATGGTGCAACTTCCTGACATTGTTTTACATATGCTTTGTTTTGCTGCACACCGTGCCCGTCATTTATGAGAAGTACGAAGACAAGATCGACCCGCTTGCAGAGAAGGCGACTATCGAGTTCAAAAAGCAGTATGCCGTGTTTGATGCCAAGGTTTTGAGTAAGATTCCGCATGGTCTAAAAAGCAAGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009628 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071944 GO:0080167 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

261

Amino Acids

29.03

Weight (kDa)

8.6

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	333
Acc36I	ACCTGC	2 cut(s)	333, 448
AccB1I	GGYRCC	1 cut(s)	356
AccIII	TCCGGA	1 cut(s)	174
AciI	CCGC	5 cut(s)	216, 279, 288, 680, 755
AclWI	GGATC	2 cut(s)	34, 70
AcoI	YGGCCR	3 cut(s)	3, 184, 340
AcsI	RAATTY	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	462
AdeI	CACNNNGTG	2 cut(s)	208, 640
AfaI	GTAC	2 cut(s)	320, 662
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	482, 535, 709
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	360
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	1 cut(s)	472
AluI	AGCT	1 cut(s)	472
Alw21I	GWGCWC	2 cut(s)	21, 213
Alw26I	GTCTC	1 cut(s)	522
AlwI	GGATC	2 cut(s)	34, 70
Aor13HI	TCCGGA	1 cut(s)	174
AoxI	GGCC	5 cut(s)	3, 162, 184, 194, 340
ApeKI	GCWGC	1 cut(s)	631
ApoI	RAATTY	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	298, 381
AsuHPI	GGTGA	4 cut(s)	98, 169, 194, 425
AvaII	GGWCC	2 cut(s)	298, 381
BaeGI	GKGCMC	2 cut(s)	361, 645
BalI	TGGCCA	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	356
BbsI	GAAGAC	4 cut(s)	96, 105, 152, 672
Bbv12I	GWGCWC	2 cut(s)	21, 213
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	2 cut(s)	55, 299
BceAI	ACGGC	2 cut(s)	171, 707
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	455
BfuAI	ACCTGC	2 cut(s)	333, 448
BisI	GCNGC	1 cut(s)	632
BlsI	GCNGC	1 cut(s)	633
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	2 cut(s)	298, 381
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	298, 381
BmiI	GGNNCC	3 cut(s)	283, 299, 358
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	3 cut(s)	473, 527, 721
BpiI	GAAGAC	4 cut(s)	96, 105, 152, 672
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	165, 360, 735
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	2 cut(s)	31, 196
BseAI	TCCGGA	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	3 cut(s)	165, 360, 735
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	459, 464
BseSI	GKGCMC	2 cut(s)	361, 645
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	618
BsgI	GTGCAG	1 cut(s)	617
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	5 cut(s)	5, 164, 186, 196, 342
BshNI	GGYRCC	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	21, 213
BsiSI	CCGG	3 cut(s)	32, 175, 197
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	522
BsnI	GGCC	5 cut(s)	5, 164, 186, 196, 342
Bsp1286I	GDGCHC	4 cut(s)	21, 213, 361, 645
Bsp13I	TCCGGA	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	26, 75, 88, 672
BspACI	CCGC	5 cut(s)	216, 279, 288, 680, 755
BspANI	GGCC	5 cut(s)	5, 164, 186, 196, 342
BspCNI	CTCAG	2 cut(s)	460, 465
BspEI	TCCGGA	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	3 cut(s)	283, 299, 358
BspMAI	CTGCAG	1 cut(s)	459
BspMI	ACCTGC	2 cut(s)	333, 448
BspPI	GGATC	2 cut(s)	34, 70
BspT107I	GGYRCC	1 cut(s)	356
BsrFI	RCCGGY	2 cut(s)	31, 196
BssAI	RCCGGY	2 cut(s)	31, 196
BssECI	CCNNGG	3 cut(s)	165, 360, 735
BssMI	GATC	4 cut(s)	26, 75, 88, 672
BssT1I	CCWWGG	2 cut(s)	165, 735
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	491, 640
Bst6I	CTCTTC	1 cut(s)	308
BstAPI	GCANNNNNTGC	2 cut(s)	591, 640
BstC8I	GCNNGC	4 cut(s)	21, 228, 559, 684
BstDEI	CTNAG	3 cut(s)	468, 473, 780
BstKTI	GATC	4 cut(s)	29, 78, 91, 675
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	4 cut(s)	26, 75, 88, 672
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	554, 591, 640, 692
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	1 cut(s)	455
BstSLI	GKGCMC	2 cut(s)	361, 645
BstV1I	GCAGC	1 cut(s)	618
BstV2I	GAAGAC	4 cut(s)	96, 105, 152, 672
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	5 cut(s)	5, 164, 186, 196, 342
BtgZI	GCGATG	1 cut(s)	33
BtrI	CACGTC	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	500
BveI	ACCTGC	2 cut(s)	333, 448
Cac8I	GCNNGC	4 cut(s)	21, 228, 559, 684
CciI	TCATGA	1 cut(s)	508
Cfr10I	RCCGGY	2 cut(s)	31, 196
Cfr13I	GGNCC	2 cut(s)	298, 381
Csp6I	GTAC	2 cut(s)	319, 661
CviAII	CATG	4 cut(s)	206, 392, 509, 758
CviQI	GTAC	2 cut(s)	319, 661
DdeI	CTNAG	3 cut(s)	468, 473, 780
DpnI	GATC	4 cut(s)	28, 77, 90, 674
DpnII	GATC	4 cut(s)	26, 75, 88, 672
DraIII	CACNNNGTG	2 cut(s)	208, 640
EaeI	YGGCCR	3 cut(s)	3, 184, 340
EagI	CGGCCG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
EciI	GGCGGA	1 cut(s)	294
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	165, 735
Eco47I	GGWCC	2 cut(s)	298, 381
Eco52I	CGGCCG	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	165, 735
ErhI	CCWWGG	2 cut(s)	165, 735
FaeI	CATG	4 cut(s)	209, 395, 512, 761
FaiI	YATR	9 cut(s)	207, 393, 420, 510, 617, 619, 654, 720, 759
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	4 cut(s)	205, 391, 508, 757
FauI	CCCGC	1 cut(s)	687
FauNDI	CATATG	1 cut(s)	617
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	632
GluI	GCNGC	1 cut(s)	632
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	5, 164, 186, 196, 342
HapII	CCGG	3 cut(s)	32, 175, 197
Hin1II	CATG	4 cut(s)	209, 395, 512, 761
HinfI	GANTC	5 cut(s)	95, 119, 152, 409, 751
HpaII	CCGG	3 cut(s)	32, 175, 197
HphI	GGTGA	4 cut(s)	98, 169, 194, 425
Hpy166II	GTNNAC	2 cut(s)	202, 433
Hpy188I	TCNGA	4 cut(s)	118, 124, 139, 469
Hpy188III	TCNNGA	6 cut(s)	92, 175, 424, 440, 509, 601
Hpy8I	GTNNAC	2 cut(s)	202, 433
Hpy99I	CGWCG	2 cut(s)	86, 103
HpyAV	CCTTC	5 cut(s)	7, 154, 250, 446, 685
HpyCH4III	ACNGT	2 cut(s)	491, 640
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	8 cut(s)	457, 464, 494, 500, 518, 594, 634, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	554, 591, 640, 692
HpyF3I	CTNAG	3 cut(s)	468, 473, 780
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	209, 395, 512, 761
Kpn2I	TCCGGA	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	26, 75, 88, 672
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	1 cut(s)	618
LweI	GCATC	3 cut(s)	473, 527, 721
MaeII	ACGT	1 cut(s)	81
MalI	GATC	4 cut(s)	28, 77, 90, 674
MboI	GATC	4 cut(s)	26, 75, 88, 672
MboII	GAAGA	8 cut(s)	73, 96, 105, 154, 157, 295, 455, 677
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	4 cut(s)	21, 213, 361, 645
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	2 cut(s)	351, 539
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	113, 161, 403
MmeI	TCCRAC	2 cut(s)	36, 141
MnlI	CCTC	8 cut(s)	31, 118, 186, 311, 386, 426, 554, 768
Mox20I	TGGCCA	1 cut(s)	342
MroI	TCCGGA	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	342
MspI	CCGG	3 cut(s)	32, 175, 197
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	4 cut(s)	554, 591, 640, 692
NdeI	CATATG	1 cut(s)	617
NdeII	GATC	4 cut(s)	26, 75, 88, 672
NlaIII	CATG	4 cut(s)	209, 395, 512, 761
NlaIV	GGNNCC	3 cut(s)	283, 299, 358
NmeAIII	GCCGAG	2 cut(s)	192, 255
OliI	CACNNNNGTG	1 cut(s)	84
PagI	TCATGA	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 107
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	2 cut(s)	95, 751
PflFI	GACNNNGTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	633
PleI	GAGTC	3 cut(s)	113, 160, 403
PpsI	GAGTC	3 cut(s)	113, 160, 403
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	283, 299, 358
PspPI	GGNCC	2 cut(s)	298, 381
PspPPI	RGGWCCY	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	75
PsyI	GACNNNGTC	1 cut(s)	151
RsaI	GTAC	2 cut(s)	320, 662
RsaNI	GTAC	2 cut(s)	319, 661
RseI	CAYNNNNRTG	1 cut(s)	84
SatI	GCNGC	1 cut(s)	632
Sau3AI	GATC	4 cut(s)	26, 75, 88, 672
Sau96I	GGNCC	2 cut(s)	298, 381
SbfI	CCTGCAGG	1 cut(s)	459
SchI	GAGTC	3 cut(s)	113, 161, 403
ScrFI	CCNGG	1 cut(s)	362
SdaI	CCTGCAGG	1 cut(s)	459
SduI	GDGCHC	4 cut(s)	21, 213, 361, 645
SetI	ASST	9 cut(s)	84, 171, 261, 327, 438, 462, 474, 741, 779
SfaNI	GCATC	3 cut(s)	473, 527, 721
SfcI	CTRYAG	1 cut(s)	455
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	298, 381
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse8387I	CCTGCAGG	1 cut(s)	459
Sse9I	AATT	2 cut(s)	351, 539
SsiI	CCGC	5 cut(s)	216, 279, 288, 680, 755
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	2 cut(s)	165, 735
TaaI	ACNGT	2 cut(s)	491, 640
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	306, 675, 702
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	351, 539
TfiI	GAWTC	2 cut(s)	95, 751
TscAI	CASTG	1 cut(s)	507
TseI	GCWGC	1 cut(s)	631
TspDTI	ATGAA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	507
Tth111I	GACNNNGTC	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	298, 381
XapI	RAATTY	1 cut(s)	539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.