Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Forward (+)

50080523 .. 50082620

Gene Structure 2098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG273000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCGAGCACAGTGAGAGCGCCGATGCTAAGGTGGAGCAGACGATGATGGAGAAGATCAGCGAGAAGATCCACGATCATCACGACTCTTCGTCGTCGTCGTCTTCGGACTCCGACACCGAGAAGCCGGCCCCGGCCACGGAGGAGTCGTCGGTCAAGGAAAAGGTGTTCCGTCTCTTCGGAAGGGAGCGTCCTGTTCATCATGTCTTTGGCGGTGGAAAGCCTGCTGATGTGTTTTTGTGGAGGAACAAGAAAATTTCGGCTGGGGTTCTTGGAGGAGTTACTGCCGTTTATGTCCTTTTTGAGTTGCTTCAATACCACTTGCTTACACTTATCTGCCATATTCTGGTTGGTACCCTAGCAATCTTGTTTCTGTGGTCCAATGCCCATACTATTATCCACAAGACTCCACCACGTATCCCAGAGGTTCGTCTTCCTGAGGAGCCATTCCTGCAGGTTGCTTCTGAGCTGAGACATCAAATCAACTGGACTTTTGCACAACTTCATAACATTGCATCTGGAAGGGAGTTGAAGAAATTCCTGATTGTACGTGTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009628 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071944 GO:0080167 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

186

Amino Acids

21.03

Weight (kDa)

6.87

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	76 - 183	4.3e-33	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	445
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	346
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	2 cut(s)	3, 135
AcsI	RAATTY	2 cut(s)	255, 536
AfaI	GTAC	2 cut(s)	355, 549
AfiI	CCNNNNNNNGG	2 cut(s)	139, 346
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	2 cut(s)	314, 532
AhdI	GACNNNNNGTC	1 cut(s)	91
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	2 cut(s)	179, 466
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	3 cut(s)	3, 129, 135
ApoI	RAATTY	2 cut(s)	255, 536
Asp700I	GAANNNNTTC	1 cut(s)	536
Asp718I	GGTACC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	130, 378
AsuC2I	CCSGG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	378
AxyI	CCTNAGG	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	353
BbsI	GAAGAC	2 cut(s)	96, 425
Bbv12I	GWGCWC	1 cut(s)	12
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	179, 466
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	445
BfuI	GTATCC	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	378
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	130, 378
BmiI	GGNNCC	3 cut(s)	132, 355, 444
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	16, 524
BpiI	GAAGAC	2 cut(s)	96, 425
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	134
BsaAI	YACGTR	2 cut(s)	416, 551
BsaJI	CCNNGG	2 cut(s)	132, 138
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 346
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	491
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	132, 138
BseLI	CCNNNNNNNGG	2 cut(s)	139, 346
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	3 cut(s)	429, 456, 461
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	3 cut(s)	158, 291, 455
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	3 cut(s)	5, 131, 137
BshNI	GGYRCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	128, 134
BslI	CCNNNNNNNGG	2 cut(s)	139, 346
BsmAI	GTCTC	2 cut(s)	179, 466
BsmBI	CGTCTC	1 cut(s)	179
BsnI	GGCC	3 cut(s)	5, 131, 137
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	57, 69, 76
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	3 cut(s)	5, 131, 137
BspCNI	CTCAG	3 cut(s)	430, 457, 462
BspLI	GGNNCC	3 cut(s)	132, 355, 444
BspMAI	CTGCAG	1 cut(s)	456
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	132, 138
BssMI	GATC	3 cut(s)	57, 69, 76
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	2 cut(s)	94, 182
BstBAI	YACGTR	2 cut(s)	416, 551
BstC8I	GCNNGC	2 cut(s)	129, 225
BstDEI	CTNAG	4 cut(s)	30, 438, 465, 470
BstDSI	CCRYGG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	3 cut(s)	60, 72, 79
BstMAI	GTCTC	2 cut(s)	179, 466
BstMBI	GATC	3 cut(s)	57, 69, 76
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	452
BstV2I	GAAGAC	2 cut(s)	96, 425
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	5, 131, 137
BtgI	CCRYGG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	129, 225
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	130, 378
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	354, 548
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	8 cut(s)	5, 127, 131, 137, 223, 263, 445, 469
CviKI_1	RGCY	8 cut(s)	5, 127, 131, 137, 223, 263, 445, 469
CviQI	GTAC	2 cut(s)	354, 548
DdeI	CTNAG	4 cut(s)	30, 438, 465, 470
DpnI	GATC	3 cut(s)	59, 71, 78
DpnII	GATC	3 cut(s)	57, 69, 76
DriI	GACNNNNNGTC	1 cut(s)	91
EaeI	YGGCCR	2 cut(s)	3, 135
Eam1104I	CTCTTC	2 cut(s)	94, 182
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	2 cut(s)	94, 182
Eco47I	GGWCC	1 cut(s)	378
Eco81I	CCTNAGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	1 cut(s)	206
FaiI	YATR	6 cut(s)	204, 294, 342, 390, 507, 556
FatI	CATG	1 cut(s)	202
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	22
GsaI	CCCAGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	5, 131, 137
HapII	CCGG	2 cut(s)	128, 134
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	86, 110, 146, 406
HpaII	CCGG	2 cut(s)	128, 134
Hpy188I	TCNGA	4 cut(s)	109, 115, 182, 466
Hpy188III	TCNNGA	4 cut(s)	83, 437, 519, 541
Hpy99I	CGWCG	4 cut(s)	97, 100, 103, 154
HpyAV	CCTTC	2 cut(s)	177, 516
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	2 cut(s)	415, 550
HpyCH4V	TGCA	3 cut(s)	454, 497, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
HpyF3I	CTNAG	4 cut(s)	30, 438, 465, 470
HpySE526I	ACGT	2 cut(s)	415, 550
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	21
KpnI	GGTACC	1 cut(s)	357
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	57, 69, 76
LmnI	GCTCC	3 cut(s)	37, 187, 442
LweI	GCATC	2 cut(s)	16, 524
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	415, 550
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	59, 71, 78
MboI	GATC	3 cut(s)	57, 69, 76
MboII	GAAGA	7 cut(s)	67, 79, 81, 96, 169, 425, 544
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	255, 536
MlyI	GAGTC	4 cut(s)	80, 104, 155, 400
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	5 cut(s)	136, 237, 269, 418, 433
MroNI	GCCGGC	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	536
MspI	CCGG	2 cut(s)	128, 134
MspR9I	CCNGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	451
NaeI	GCCGGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	3 cut(s)	57, 69, 76
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	3 cut(s)	132, 355, 444
NmeAIII	GCCGAG	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 98, 146
PdiI	GCCGGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	346
PleI	GAGTC	4 cut(s)	80, 104, 154, 400
PpsI	GAGTC	4 cut(s)	80, 104, 154, 400
Ppu21I	YACGTR	2 cut(s)	416, 551
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	3 cut(s)	132, 355, 444
PspPI	GGNCC	2 cut(s)	130, 378
PstI	CTGCAG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	2 cut(s)	355, 549
RsaNI	GTAC	2 cut(s)	354, 548
Sau3AI	GATC	3 cut(s)	57, 69, 76
Sau96I	GGNCC	2 cut(s)	130, 378
SbfI	CCTGCAGG	1 cut(s)	456
SchI	GAGTC	4 cut(s)	80, 104, 155, 400
ScrFI	CCNGG	1 cut(s)	134
SdaI	CCTGCAGG	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	7 cut(s)	36, 168, 418, 429, 459, 471, 553
SfaNI	GCATC	2 cut(s)	16, 524
SfcI	CTRYAG	1 cut(s)	452
SinI	GGWCC	1 cut(s)	378
Sse8387I	CCTGCAGG	1 cut(s)	456
Sse9I	AATT	2 cut(s)	255, 536
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	2 cut(s)	418, 553
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	255, 536
TscAI	CASTG	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	188, 494
TspGWI	ACGGA	2 cut(s)	155, 161
TspRI	CASTG	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	2 cut(s)	255, 536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.