Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Forward (+)

11478089 .. 11480180

Gene Structure 2092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G110100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGGAGCATACGGAGGAAGTGAAGGCGGCGGAGTCTCTGATGGATAAGATAGCGGACAAGATCCACGGCCACGATTCGCCAGTGTCGCCGGCGGTGGAGTCGCTGCACGAGAAGGCCGTCAGCAGCGGCCATGCGGCGTCGTTGAAGGCCAAGGCTTACAGTCTCTTTGGGAGGGAGAAGCCCGTGCACAACGTCTTCGGCGGTGGAAAAGCGGCAGATGTTTTCCTGTGGAGGGACAAGAAGGGATCGGCAAGTGTTCTTATTGCGATAACGATCATATGGGTTTTCTTTGAATTGCTTGGCTACCACCTGCTGACTCTGATGGCCCACTGCTTGATTCTGGTTCTTGCAATGTTGTTCTTATGGTCCAACGCTTCAACCTTCATTAACAAGTCTCCACCACGCATTCCACAAGTTAAAATTCCAGAGAAGCCGGTTCTACAGATTGCGTCTGCAATTACAATTGAGATTAACCGGGCTTTTGTTATCCTGCGAGAGATTGCCTCAGGGAAGGATCTGAAGCAGTTCCTCTCTGTGATTGCTGGCTTGTGGGTTTTGTCTATCCTGGGGAAGTGGTACAACTTCTTGACCTTGGTCTACATAGTTGTTGTTTTGCTCTTCACGCTGCCTGTATTCTATGAGAAATATGACGACCAGGTGGATGCATTCGCAGAGAAGGCTATGATCGAGATCAAGAAGCAGTATGCAGTGTTTGATGCAAAGGTCCTAAGTAAAGTTCCTAAGGGGCAAATGAAGGACAAGAAGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

258

Amino Acids

28.65

Weight (kDa)

9.19

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	321
Acc36I	ACCTGC	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	9 cut(s)	5, 29, 32, 56, 95, 129, 137, 204, 215
AclWI	GGATC	3 cut(s)	58, 256, 525
AcoI	YGGCCR	2 cut(s)	70, 130
AcsI	RAATTY	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	148, 296, 381
AjnI	CCWGG	2 cut(s)	567, 657
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	42, 170, 402
Alw44I	GTGCAC	1 cut(s)	188
AlwI	GGATC	3 cut(s)	58, 256, 525
AoxI	GGCC	5 cut(s)	70, 117, 130, 150, 327
ApaLI	GTGCAC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	106, 126, 628
ApoI	RAATTY	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	527
AspS9I	GGNCC	3 cut(s)	328, 369, 727
AsuC2I	CCSGG	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	369, 727
AxyI	CCTNAGG	2 cut(s)	508, 744
BaeGI	GKGCMC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	93, 138, 615
BccI	CCATC	2 cut(s)	37, 319
BceAI	ACGGC	2 cut(s)	85, 104
BciT130I	CCWGG	2 cut(s)	569, 659
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	3 cut(s)	42, 170, 402
BfmI	CTRYAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	321
BisI	GCNGC	7 cut(s)	30, 107, 127, 130, 138, 216, 629
BlsI	GCNGC	7 cut(s)	31, 108, 128, 131, 139, 217, 630
Bme1390I	CCNGG	3 cut(s)	479, 569, 659
Bme18I	GGWCC	2 cut(s)	369, 727
BmgT120I	GGNCC	3 cut(s)	328, 369, 727
BmrFI	CCNGG	3 cut(s)	479, 569, 659
BmsI	GCATC	2 cut(s)	655, 709
BoxI	GACNNNNGTC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpuMI	CCSGG	1 cut(s)	479
BsaBI	GATNNNNATC	2 cut(s)	275, 692
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	67, 153, 568, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	2 cut(s)	91, 436
Bse1I	ACTGG	1 cut(s)	83
Bse21I	CCTNAGG	2 cut(s)	508, 744
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	2 cut(s)	275, 692
BseBI	CCWGG	2 cut(s)	569, 659
BseDI	CCNNGG	4 cut(s)	67, 153, 568, 594
BseGI	GGATG	1 cut(s)	670
BseJI	GATNNNNATC	2 cut(s)	275, 692
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	93, 138, 615
BsgI	GTGCAG	1 cut(s)	92
BshFI	GGCC	5 cut(s)	72, 119, 132, 152, 329
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	92, 437, 478
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	3 cut(s)	42, 170, 402
BsmFI	GGGAC	1 cut(s)	251
BsmI	GAATGC	2 cut(s)	408, 668
BsnI	GGCC	5 cut(s)	72, 119, 132, 152, 329
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	6 cut(s)	63, 248, 276, 517, 687, 693
BspACI	CCGC	9 cut(s)	5, 29, 32, 56, 95, 129, 137, 204, 215
BspANI	GGCC	5 cut(s)	72, 119, 132, 152, 329
BspCNI	CTCAG	1 cut(s)	521
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	3 cut(s)	58, 256, 525
BspQI	GCTCTTC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	2 cut(s)	91, 436
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	2 cut(s)	91, 436
BssECI	CCNNGG	4 cut(s)	67, 153, 568, 594
BssMI	GATC	6 cut(s)	63, 248, 276, 517, 687, 693
BssNI	GRCGYC	1 cut(s)	140
BssSI	CACGAG	1 cut(s)	110
BssT1I	CCWWGG	2 cut(s)	153, 594
Bst2BI	CACGAG	1 cut(s)	110
Bst2UI	CCWGG	2 cut(s)	569, 659
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	626
BstACI	GRCGYC	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	93, 547
BstDEI	CTNAG	4 cut(s)	508, 731, 744, 771
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	670
BstKTI	GATC	6 cut(s)	66, 251, 279, 520, 690, 696
BstMAI	GTCTC	3 cut(s)	42, 170, 402
BstMBI	GATC	6 cut(s)	63, 248, 276, 517, 687, 693
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 625, 680
BstNI	CCWGG	2 cut(s)	569, 659
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSCI	CCNGG	3 cut(s)	477, 567, 657
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	93, 138, 615
BstV2I	GAAGAC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	63, 517
BstYI	RGATCY	2 cut(s)	63, 517
Bsu36I	CCTNAGG	2 cut(s)	508, 744
BsuRI	GGCC	5 cut(s)	72, 119, 132, 152, 329
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	670
BtsI	GCAGTG	2 cut(s)	331, 717
BtsIMutI	CAGTG	3 cut(s)	90, 331, 717
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	93, 547
Cfr10I	RCCGGY	2 cut(s)	91, 436
Cfr13I	GGNCC	3 cut(s)	328, 369, 727
CseI	GACGC	2 cut(s)	129, 441
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	1 cut(s)	134
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	4 cut(s)	508, 731, 744, 771
DpnI	GATC	6 cut(s)	65, 250, 278, 519, 689, 695
DpnII	GATC	6 cut(s)	63, 248, 276, 517, 687, 693
EaeI	YGGCCR	2 cut(s)	70, 130
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
EciI	GGCGGA	2 cut(s)	20, 47
Eco130I	CCWWGG	2 cut(s)	153, 594
Eco47I	GGWCC	2 cut(s)	369, 727
Eco57I	CTGAAG	1 cut(s)	542
Eco81I	CCTNAGG	2 cut(s)	508, 744
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRII	CCWGG	2 cut(s)	567, 657
EcoT14I	CCWWGG	2 cut(s)	153, 594
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	2 cut(s)	153, 594
FaeI	CATG	1 cut(s)	137
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	133
FauNDI	CATATG	1 cut(s)	281
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	7 cut(s)	30, 107, 127, 130, 138, 216, 629
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	7 cut(s)	30, 107, 127, 130, 138, 216, 629
GluI	GCNGC	7 cut(s)	30, 107, 127, 130, 138, 216, 629
HaeIII	GGCC	5 cut(s)	72, 119, 132, 152, 329
HapII	CCGG	3 cut(s)	92, 437, 478
HgaI	GACGC	2 cut(s)	129, 441
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	5 cut(s)	35, 77, 101, 319, 340
HpaII	CCGG	3 cut(s)	92, 437, 478
Hpy166II	GTNNAC	2 cut(s)	190, 601
Hpy188I	TCNGA	3 cut(s)	42, 324, 522
Hpy188III	TCNNGA	4 cut(s)	428, 589, 691, 697
Hpy8I	GTNNAC	2 cut(s)	190, 601
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	8 cut(s)	19, 109, 142, 238, 394, 508, 673, 751
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	7 cut(s)	109, 190, 353, 458, 668, 710, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 625, 680
HpyF3I	CTNAG	4 cut(s)	508, 731, 744, 771
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	6 cut(s)	63, 248, 276, 517, 687, 693
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	3 cut(s)	93, 138, 615
LweI	GCATC	2 cut(s)	655, 709
MabI	ACCWGGT	1 cut(s)	657
MaeII	ACGT	1 cut(s)	195
MalI	GATC	6 cut(s)	65, 250, 278, 519, 689, 695
MboI	GATC	6 cut(s)	63, 248, 276, 517, 687, 693
MboII	GAAGA	2 cut(s)	190, 613
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	2 cut(s)	63, 517
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	4 cut(s)	296, 423, 459, 465
MlyI	GAGTC	3 cut(s)	44, 110, 313
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	5 cut(s)	10, 168, 228, 517, 542
Mph1103I	ATGCAT	1 cut(s)	670
MreI	CGCCGGCG	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	3 cut(s)	390, 420, 474
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	3 cut(s)	92, 437, 478
MspR9I	CCNGG	3 cut(s)	479, 569, 659
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	2 cut(s)	408, 668
MvaI	CCWGG	2 cut(s)	569, 659
MwoI	GCNNNNNNNGC	3 cut(s)	88, 625, 680
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	281
NdeII	GATC	6 cut(s)	63, 248, 276, 517, 687, 693
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	670
PaqCI	CACCTGC	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	2 cut(s)	408, 668
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	77, 340
PkrI	GCNGC	7 cut(s)	31, 108, 128, 131, 139, 217, 630
PleI	GAGTC	3 cut(s)	43, 109, 313
PpsI	GAGTC	3 cut(s)	43, 109, 313
PpuMI	RGGWCCY	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	727
Psp6I	CCWGG	2 cut(s)	567, 657
PspGI	CCWGG	2 cut(s)	567, 657
PspPI	GGNCC	3 cut(s)	328, 369, 727
PspPPI	RGGWCCY	1 cut(s)	727
PsuI	RGATCY	2 cut(s)	63, 517
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	3 cut(s)	390, 420, 474
SatI	GCNGC	7 cut(s)	30, 107, 127, 130, 138, 216, 629
Sau3AI	GATC	6 cut(s)	63, 248, 276, 517, 687, 693
Sau96I	GGNCC	3 cut(s)	328, 369, 727
SchI	GAGTC	3 cut(s)	44, 110, 313
ScrFI	CCNGG	3 cut(s)	479, 569, 659
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	6 cut(s)	198, 315, 386, 596, 663, 729
SexAI	ACCWGGT	1 cut(s)	657
SfaNI	GCATC	2 cut(s)	655, 709
SfcI	CTRYAG	1 cut(s)	443
SgrAI	CRCCGGYG	1 cut(s)	91
SinI	GGWCC	2 cut(s)	369, 727
Sse9I	AATT	4 cut(s)	296, 423, 459, 465
SsiI	CCGC	9 cut(s)	5, 29, 32, 56, 95, 129, 137, 204, 215
StyD4I	CCNGG	3 cut(s)	477, 567, 657
StyI	CCWWGG	2 cut(s)	153, 594
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	690
TasI	AATT	4 cut(s)	296, 423, 459, 465
TauI	GCSGC	4 cut(s)	32, 132, 140, 218
TfiI	GAWTC	2 cut(s)	77, 340
Tru1I	TTAA	3 cut(s)	390, 420, 474
Tru9I	TTAA	3 cut(s)	390, 420, 474
TscAI	CASTG	3 cut(s)	90, 338, 717
TseI	GCWGC	3 cut(s)	106, 126, 628
TspDTI	ATGAA	2 cut(s)	376, 770
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	90, 338, 717
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	369, 727
XapI	RAATTY	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	527
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.