Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Forward (+)

14397681 .. 14398981

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGGAGCGTACGGACGGAGTGAAGGCGGCGGAGTCTTTGATGGACAGGATATCCGACAAGATCCACGGCCACGATTCGTCGTCGGTGGTGCCGTCGTCGGGGGTGGTGCACGACAAGGGCATTGGCGGTGGCCATTCAACGTCGTTGAAGTCGAAGGTTAACAGGCTCTTTGGGAGGGAGAAGCCCGTGCACCACGTCTTCGGTGGCGGAAAAGCGGCTGATGTTTTCCTGTGGAGGGACAAGAAGGCGTCCGCAGGTGTTCTTATCGCCTTAACGATCATATGGGTCTTCTTTGAATTGTTTGAATATCACCTGCTGACTCTGGTCTCCCACTTGTTGATTCTTGGGATTGCTTCGTTGTTCTTATGGTCCAACGCTTCAACCTTCATTAACAAGTCTCCACCCCACATTCCACAAGTTCAAATTCCAGAAAAGCCGGTTCTACAGATTGCGTCTGTAATCACAATGGAGATCAATCGGGCTTTTGTTATCCTGCGGGAGATTGCTTCTGGCAAGGATCTGAAGCAGTTCCTCTCTGTATGTTTGTTGTGCTCTAGCTCTTTCTTTTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

193

Amino Acids

21.02

Weight (kDa)

9.17

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	248, 324
Acc36I	ACCTGC	2 cut(s)	248, 324
AccB1I	GGYRCC	1 cut(s)	91
AciI	CCGC	8 cut(s)	5, 29, 32, 129, 210, 218, 255, 499
AclWI	GGATC	2 cut(s)	58, 528
AcoI	YGGCCR	2 cut(s)	70, 133
AcsI	RAATTY	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	101, 238
AgsI	TTSAA	6 cut(s)	141, 151, 299, 308, 384, 425
AjiI	CACGTC	1 cut(s)	199
AluBI	AGCT	1 cut(s)	561
AluI	AGCT	1 cut(s)	561
Alw21I	GWGCWC	3 cut(s)	114, 195, 557
Alw26I	GTCTC	2 cut(s)	334, 405
Alw44I	GTGCAC	2 cut(s)	110, 191
AlwI	GGATC	2 cut(s)	58, 528
AoxI	GGCC	2 cut(s)	70, 133
ApaLI	GTGCAC	2 cut(s)	110, 191
ApoI	RAATTY	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	372
BaeGI	GKGCMC	2 cut(s)	114, 195
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	91
BbsI	GAAGAC	2 cut(s)	193, 283
Bbv12I	GWGCWC	3 cut(s)	114, 195, 557
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	2 cut(s)	79, 85
BcoDI	GTCTC	2 cut(s)	334, 405
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	446
BfuAI	ACCTGC	2 cut(s)	248, 324
BisI	GCNGC	2 cut(s)	30, 219
BlsI	GCNGC	2 cut(s)	31, 220
Bme18I	GGWCC	1 cut(s)	372
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	93
BoxI	GACNNNNGTC	1 cut(s)	326
BpiI	GAAGAC	2 cut(s)	193, 283
BsaHI	GRCGYC	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 238
Bse118I	RCCGGY	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	101, 238
BseSI	GKGCMC	2 cut(s)	114, 195
BshFI	GGCC	2 cut(s)	72, 135
BshNI	GGYRCC	1 cut(s)	91
BsiHKAI	GWGCWC	3 cut(s)	114, 195, 557
BsiSI	CCGG	1 cut(s)	440
BsiWI	CGTACG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	101, 238
BsmAI	GTCTC	2 cut(s)	334, 405
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	72, 135
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	3 cut(s)	114, 195, 557
Bsp143I	GATC	4 cut(s)	63, 279, 474, 520
BspACI	CCGC	8 cut(s)	5, 29, 32, 129, 210, 218, 255, 499
BspANI	GGCC	2 cut(s)	72, 135
BspLI	GGNNCC	1 cut(s)	93
BspMI	ACCTGC	2 cut(s)	248, 324
BspPI	GGATC	2 cut(s)	58, 528
BspT107I	GGYRCC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	4 cut(s)	63, 279, 474, 520
BssNI	GRCGYC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	67
BstKTI	GATC	4 cut(s)	66, 282, 477, 523
BstMAI	GTCTC	2 cut(s)	334, 405
BstMBI	GATC	4 cut(s)	63, 279, 474, 520
BstPAI	GACNNNNGTC	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	446
BstSLI	GKGCMC	2 cut(s)	114, 195
BstV2I	GAAGAC	2 cut(s)	193, 283
BstX2I	RGATCY	2 cut(s)	63, 520
BstYI	RGATCY	2 cut(s)	63, 520
BsuRI	GGCC	2 cut(s)	72, 135
BtgI	CCRYGG	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	199
BveI	ACCTGC	2 cut(s)	248, 324
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	372
CseI	GACGC	2 cut(s)	240, 444
Csp6I	GTAC	1 cut(s)	12
CviJI	RGCY	8 cut(s)	72, 135, 169, 187, 221, 439, 485, 561
CviKI_1	RGCY	8 cut(s)	72, 135, 169, 187, 221, 439, 485, 561
CviQI	GTAC	1 cut(s)	12
DpnI	GATC	4 cut(s)	65, 281, 476, 522
DpnII	GATC	4 cut(s)	63, 279, 474, 520
EaeI	YGGCCR	2 cut(s)	70, 133
EciI	GGCGGA	3 cut(s)	20, 47, 225
Eco31I	GGTCTC	1 cut(s)	334
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	545
EcoRV	GATATC	1 cut(s)	54
FaiI	YATR	4 cut(s)	284, 286, 370, 544
FaqI	GGGAC	1 cut(s)	254
FauI	CCCGC	1 cut(s)	492
FauNDI	CATATG	1 cut(s)	284
Fnu4HI	GCNGC	2 cut(s)	30, 219
Fsp4HI	GCNGC	2 cut(s)	30, 219
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	2 cut(s)	30, 219
HaeIII	GGCC	2 cut(s)	72, 135
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	2 cut(s)	240, 444
Hin1I	GRCGYC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	4 cut(s)	35, 77, 322, 343
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	3 cut(s)	112, 163, 193
Hpy188I	TCNGA	2 cut(s)	58, 525
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	3 cut(s)	112, 163, 193
Hpy99I	CGWCG	5 cut(s)	85, 88, 100, 103, 148
HpyAV	CCTTC	4 cut(s)	19, 151, 241, 397
HpyCH4IV	ACGT	2 cut(s)	143, 198
HpyCH4V	TGCA	2 cut(s)	112, 193
HpySE526I	ACGT	2 cut(s)	143, 198
Hsp92I	GRCGYC	1 cut(s)	251
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	63, 279, 474, 520
LmnI	GCTCC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	2 cut(s)	143, 198
MalI	GATC	4 cut(s)	65, 281, 476, 522
MboI	GATC	4 cut(s)	63, 279, 474, 520
MboII	GAAGA	2 cut(s)	193, 283
MflI	RGATCY	2 cut(s)	63, 520
MhlI	GDGCHC	3 cut(s)	114, 195, 557
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	3 cut(s)	299, 426, 574
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	44, 316
MmeI	TCCRAC	2 cut(s)	81, 399
MnlI	CCTC	3 cut(s)	171, 231, 545
Mox20I	TGGCCA	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	3 cut(s)	162, 275, 393
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	1 cut(s)	440
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	4 cut(s)	63, 279, 474, 520
NlaIV	GGNNCC	1 cut(s)	93
PaqCI	CACCTGC	2 cut(s)	248, 324
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 152
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	77, 343
Pfl23II	CGTACG	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	31, 220
PleI	GAGTC	2 cut(s)	43, 316
PpsI	GAGTC	2 cut(s)	43, 316
PshAI	GACNNNNGTC	1 cut(s)	326
PspLI	CGTACG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	63, 520
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	162, 275, 393
SatI	GCNGC	2 cut(s)	30, 219
Sau3AI	GATC	4 cut(s)	63, 279, 474, 520
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	2 cut(s)	44, 316
SduI	GDGCHC	3 cut(s)	114, 195, 557
SetI	ASST	7 cut(s)	146, 162, 201, 262, 318, 389, 563
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	372
Sse9I	AATT	3 cut(s)	299, 426, 574
SsiI	CCGC	8 cut(s)	5, 29, 32, 129, 210, 218, 255, 499
SspMI	CTAG	1 cut(s)	558
TaiI	ACGT	2 cut(s)	146, 201
TaqI	TCGA	1 cut(s)	155
TasI	AATT	3 cut(s)	299, 426, 574
TauI	GCSGC	2 cut(s)	32, 221
TfiI	GAWTC	2 cut(s)	77, 343
Tru1I	TTAA	3 cut(s)	162, 275, 393
Tru9I	TTAA	3 cut(s)	162, 275, 393
TspDTI	ATGAA	1 cut(s)	379
TspGWI	ACGGA	2 cut(s)	29, 33
VneI	GTGCAC	2 cut(s)	110, 191
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.