Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Forward (+)

2072039 .. 2074099

Gene Structure 2061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03500.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGGAGGAAGTGAAGGCGGAGTCGTTGATGGAGAAGATCGAGGACAAGATTCTCGGCCACCATGATTCGCCGGCGCCGGAAGTCGTGCACCACGATTCGCCGAGGTCGATGCAGGACAAGGTTTTCAGGATCTTCGGTAGGGAGAGGCCTGTGCACCATGTCTTTGGCGGTGGAAAGTTGGCTGATATTTTCTTGTGGAGGGATAAGAAGCTGTCGGGAGGTATTCTTGGTGGAGCAACGGTGATGTGGCTTCTGTTTGAACTGCTTGAATACCACCTGCTCACTTTGGTCGCGCACGTCTTGATTGCTGCGATCACATTATTCTTCTTGTGGTCCAATGGTTTAGGGTTCATTAACAAGTCTCCACCCAAGATTCCAGAGATTCAAATTCCTGAGAAGACGCTTCTACAGATTGTCTCATCAATTACATTTGAGATTAACCGGGCTCTTGTTGTCATCAGGGATATAGCTTCAGGGAAGGATCTGAAGCAGTTCCTCTCTGTGATTGCTGGTCTATGGGTTGTGTCTATCTTGGGGAAGTCATGTAACTTCTTGACCCTGTTATACATAGCAATCGTATTGCTTTTCTCAGTGCCTGTGTTCTATGAGAAATATGATCACAAGATTGACCCACTTGCAGAGAAGGCTATGTTTGAAATCAAGAAGCAGTATGCTGTATTTGATGCAAAGGTGCTGAGTAAGATTCCTAGGGGTGCATTAAAGGCCAAGAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

247

Amino Acids

27.71

Weight (kDa)

9.14

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	62 - 192	1.8e-44	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	76
AccII	CGCG	1 cut(s)	296
AciI	CCGC	3 cut(s)	5, 20, 171
AclWI	GGATC	2 cut(s)	140, 492
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	2 cut(s)	459, 509
AcyI	GRCGYC	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	263, 272, 389, 659
AjiI	CACGTC	1 cut(s)	301
AluBI	AGCT	2 cut(s)	214, 473
AluI	AGCT	2 cut(s)	214, 473
Alw21I	GWGCWC	2 cut(s)	93, 159
Alw26I	GTCTC	2 cut(s)	369, 424
Alw44I	GTGCAC	2 cut(s)	89, 155
AlwI	GGATC	2 cut(s)	140, 492
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	3 cut(s)	58, 149, 726
ApaLI	GTGCAC	2 cut(s)	89, 155
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	494
AspA2I	CCTAGG	1 cut(s)	710
AspLEI	GCGC	2 cut(s)	79, 298
AspS9I	GGNCC	1 cut(s)	336
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	336
AvrII	CCTAGG	1 cut(s)	710
BaeGI	GKGCMC	2 cut(s)	93, 159
BanI	GGYRCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	2 cut(s)	93, 159
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	369, 424
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	410
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	288
BisI	GCNGC	1 cut(s)	312
BlnI	CCTAGG	1 cut(s)	710
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	102, 676
BpiI	GAAGAC	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	104, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse118I	RCCGGY	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	104, 710
BseMII	CTCAG	3 cut(s)	387, 606, 689
BseSI	GKGCMC	2 cut(s)	93, 159
BseXI	GCAGC	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	3 cut(s)	60, 151, 728
BshNI	GGYRCC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	93, 159
BsiSI	CCGG	3 cut(s)	74, 80, 445
BsmAI	GTCTC	2 cut(s)	369, 424
BsnI	GGCC	3 cut(s)	60, 151, 728
Bsp1286I	GDGCHC	3 cut(s)	93, 159, 451
Bsp143I	GATC	5 cut(s)	39, 132, 315, 484, 619
BspACI	CCGC	3 cut(s)	5, 20, 171
BspANI	GGCC	3 cut(s)	60, 151, 728
BspCNI	CTCAG	3 cut(s)	388, 605, 690
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	140, 492
BspT107I	GGYRCC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	104, 710
BssMI	GATC	5 cut(s)	39, 132, 315, 484, 619
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	710
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	396, 592, 698
BstFNI	CGCG	1 cut(s)	296
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 298
BstKTI	GATC	5 cut(s)	42, 135, 318, 487, 622
BstMAI	GTCTC	2 cut(s)	369, 424
BstMBI	GATC	5 cut(s)	39, 132, 315, 484, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	647, 725
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	2 cut(s)	93, 159
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	2 cut(s)	132, 484
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstYI	RGATCY	2 cut(s)	132, 484
BsuRI	GGCC	3 cut(s)	60, 151, 728
BtrI	CACGTC	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	600
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	2 cut(s)	79, 298
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	336
CseI	GACGC	1 cut(s)	412
CviAII	CATG	3 cut(s)	65, 161, 546
CviJI	RGCY	9 cut(s)	60, 151, 185, 214, 253, 449, 473, 650, 728
CviKI_1	RGCY	9 cut(s)	60, 151, 185, 214, 253, 449, 473, 650, 728
DdeI	CTNAG	3 cut(s)	396, 592, 698
DinI	GGCGCC	1 cut(s)	78
DpnI	GATC	5 cut(s)	41, 134, 317, 486, 621
DpnII	GATC	5 cut(s)	39, 132, 315, 484, 619
EaeI	YGGCCR	1 cut(s)	58
EciI	GGCGGA	2 cut(s)	20, 35
Eco130I	CCWWGG	1 cut(s)	710
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	459, 509
EcoT14I	CCWWGG	1 cut(s)	710
EcoT38I	GRGCYC	1 cut(s)	451
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	710
FaeI	CATG	3 cut(s)	68, 164, 549
FatI	CATG	3 cut(s)	64, 160, 545
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	2 cut(s)	78, 297
GluI	GCNGC	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	60, 151, 728
HapII	CCGG	3 cut(s)	74, 80, 445
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	2 cut(s)	79, 298
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	3 cut(s)	68, 164, 549
Hin6I	GCGC	2 cut(s)	77, 296
HinP1I	GCGC	2 cut(s)	77, 296
HinfI	GANTC	7 cut(s)	23, 52, 68, 98, 376, 385, 706
HpaII	CCGG	3 cut(s)	74, 80, 445
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	91, 157
Hpy188I	TCNGA	1 cut(s)	489
Hpy188III	TCNNGA	7 cut(s)	130, 219, 304, 380, 395, 556, 664
Hpy8I	GTNNAC	2 cut(s)	91, 157
HpyAV	CCTTC	3 cut(s)	10, 475, 640
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	91, 115, 157, 641, 689, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	647, 725
HpyF3I	CTNAG	3 cut(s)	396, 592, 698
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	68, 164, 549
HspAI	GCGC	2 cut(s)	77, 296
KasI	GGCGCC	1 cut(s)	76
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	5 cut(s)	39, 132, 315, 484, 619
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	102, 676
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	5 cut(s)	41, 134, 317, 486, 621
MboI	GATC	5 cut(s)	39, 132, 315, 484, 619
MboII	GAAGA	4 cut(s)	49, 127, 319, 412
MflI	RGATCY	2 cut(s)	132, 484
MhlI	GDGCHC	3 cut(s)	93, 159, 451
MluCI	AATT	2 cut(s)	390, 426
Mly113I	GGCGCC	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	6 cut(s)	37, 99, 141, 195, 215, 509
MreI	CGCCGGCG	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	494
MseI	TTAA	3 cut(s)	357, 441, 722
MspI	CCGG	3 cut(s)	74, 80, 445
MspR9I	CCNGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	647, 725
NaeI	GCCGGC	1 cut(s)	75
NarI	GGCGCC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	446
NdeII	GATC	5 cut(s)	39, 132, 315, 484, 619
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	3 cut(s)	68, 164, 549
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	2 cut(s)	36, 129
PaqCI	CACCTGC	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 107
PdiI	GCCGGC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	6 cut(s)	52, 68, 98, 376, 385, 706
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	31
PluTI	GGCGCC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	132, 484
SaqAI	TTAA	3 cut(s)	357, 441, 722
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	5 cut(s)	39, 132, 315, 484, 619
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	3 cut(s)	93, 159, 451
SetI	ASST	8 cut(s)	110, 126, 216, 226, 282, 303, 475, 696
SfaNI	GCATC	2 cut(s)	102, 676
SfcI	CTRYAG	1 cut(s)	410
SfoI	GGCGCC	1 cut(s)	78
SgrAI	CRCCGGYG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	336
Sse9I	AATT	2 cut(s)	390, 426
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	3 cut(s)	5, 20, 171
SspDI	GGCGCC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	711
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	42, 110
TasI	AATT	2 cut(s)	390, 426
TfiI	GAWTC	6 cut(s)	52, 68, 98, 376, 385, 706
Tru1I	TTAA	3 cut(s)	357, 441, 722
Tru9I	TTAA	3 cut(s)	357, 441, 722
TscAI	CASTG	1 cut(s)	600
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	600
VneI	GTGCAC	2 cut(s)	89, 155
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	390
XmaJI	CCTAGG	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.