Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002430

Physical Location & Seq

Genomic Coordinates Forward (+)

55719288 .. 55720909

Gene Structure 1622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004055

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCGGATGAGCATAAGGAGGAAGTGAGGGCGGAGTCGTTGATGGAGAAGATCGAGGAGAAGATCCACGGCCACCACGATTCGCCGGCGCCGGAAGTCGTGCGAGAGAAGAGCGGCGGCCTTTCGCCGAGTTCGTTGAAGGACAAGGTTTACAGAATCTTCGGCAGGGAAAAGCCTGTGCACCATGTCTTCGGTGGTGGAAAGTTGGCTGATGTTTTCCTGTGGAGGGATAAGAAGCTGTCGGGTGGTATTCTTGGTGGAGCAACAGTGATGTGGGTTCTCTTTGAATTGCTTGAATACCACCTGCTCACTTTGGTCGCGCACCTCTTGATTGTTGCGATAGCAGTGTTCTTCTTGTGGTCCAATGCTTTAACATTCATTAACAAGTCTCCACCCAAGATTCCAGATATTCAAATTCCAGAGAAGCCGTTTCTACAGATTGTCTCTGCAATTACATTTGAGATCAACCGGGCTCTTGTTGTCATCAGGGATATAGCTTCAGGGAAGGATCTGAAGCAGTTCCTCTCTGTGATTGCTGGTCTATGGATTGTGTCTATCTTGGGAAAGTCTTATAACTTCTTGACCCTGGTTTACATAGCAACTGTGTTGCTGTTCTCAGTGCCTGTGTTCTATGAGAAATATGAGGACAAGATCGATCCACTTGCAGAGAAGGCTATGTTTGAGATCAAGAAGCAGTATGCCGTATTTGATGTGAAGGTTCTAAGTAAGATTCCTAGGGGGGCATTGAAGAACAAGAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006996 GO:0007029 GO:0008150 GO:0009506 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0071944 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

255

Amino Acids

28.67

Weight (kDa)

9.14

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	70 - 225	1.5e-56	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46170 AT2G46170 AT3G61560 AT3G61560 AT3G61560
fragaria_vesca	FvH4_5g03500 FvH4_5g03500 FvH4_5g03500 FvH4_7g15520
malus_domestica	MD01G1072500.v1.1 MD06G1095200.v1.1 MD07G1130400.v1.1 MD14G1115200.v1.1
prunus_persica	Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.2G178800_v2.0.a1 Prupe.5G110100_v2.0.a1
pyrus_communis	pycom01g10170 pycom06g09180 pycom07g12740
rosa_chinensis	RchiOBHm_Chr1g0357851 RchiOBHm_Chr7g0196181
rosa_laevigata	RLG00000004055 RLG00000027991
rosa_multiflora	Rmu_sc0002071.1_g000003 Rmu_sc0011198.1_g000005 Rmu_sc0015956.1_g000002 Rmu_sc0019298.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259690 Rroxscaffold_4G00298450
rosa_rugosa	Rorug01G0259000 Rorug01G0259100 Rorug07G0031700
rosa_samantha	Rh1AG273000 Rh1BG240300 Rh7AG157300 Rh7BG158900 Rh7CG162800 Rh7DG158300
rosa_wichuraiana	Rw1G024380 Rw7G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AarI	CACCTGC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	320
AciI	CCGC	4 cut(s)	5, 32, 114, 117
AclWI	GGATC	3 cut(s)	58, 516, 650
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	2 cut(s)	483, 533
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	5 cut(s)	139, 287, 296, 413, 748
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	2 cut(s)	238, 497
AluI	AGCT	2 cut(s)	238, 497
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	393, 448
Alw44I	GTGCAC	1 cut(s)	179
AlwI	GGATC	3 cut(s)	58, 516, 650
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	2 cut(s)	70, 118
ApaLI	GTGCAC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	518
AspA2I	CCTAGG	1 cut(s)	734
AspLEI	GCGC	2 cut(s)	91, 322
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	360
AvrII	CCTAGG	1 cut(s)	734
BaeGI	GKGCMC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	3 cut(s)	85, 412, 686
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	1 cut(s)	587
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	393, 448
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	2 cut(s)	115, 118
BlnI	CCTAGG	1 cut(s)	734
BlsI	GCNGC	2 cut(s)	116, 119
Bme1390I	CCNGG	2 cut(s)	470, 587
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	470, 587
BpiI	GAAGAC	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	470
Bsa29I	ATCGAT	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	67, 585, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	587
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	67, 585, 734
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	630
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	72, 120
BshNI	GGYRCC	1 cut(s)	88
BshVI	ATCGAT	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	86, 92, 469
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	393, 448
BsnI	GGCC	2 cut(s)	72, 120
Bsp1286I	GDGCHC	2 cut(s)	183, 475
Bsp143I	GATC	7 cut(s)	51, 63, 462, 508, 651, 655, 684
BspACI	CCGC	4 cut(s)	5, 32, 114, 117
BspANI	GGCC	2 cut(s)	72, 120
BspCNI	CTCAG	1 cut(s)	629
BspDI	ATCGAT	1 cut(s)	654
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	58, 516, 650
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	88
BsrBI	CCGCTC	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	3 cut(s)	67, 585, 734
BssMI	GATC	7 cut(s)	51, 63, 462, 508, 651, 655, 684
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	268, 604
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	616, 722
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 322
BstKTI	GATC	7 cut(s)	54, 66, 465, 511, 654, 658, 687
BstMAI	GTCTC	2 cut(s)	393, 448
BstMBI	GATC	7 cut(s)	51, 63, 462, 508, 651, 655, 684
BstMWI	GCNNNNNNNGC	1 cut(s)	671
BstNI	CCWGG	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	468, 585
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	2 cut(s)	63, 508
BstYI	RGATCY	2 cut(s)	63, 508
Bsu15I	ATCGAT	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	72, 120
BsuTUI	ATCGAT	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	273, 351, 624
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	2 cut(s)	91, 322
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	654
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	9 cut(s)	72, 120, 175, 209, 238, 427, 473, 497, 674
CviKI_1	RGCY	9 cut(s)	72, 120, 175, 209, 238, 427, 473, 497, 674
DdeI	CTNAG	2 cut(s)	616, 722
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	7 cut(s)	53, 65, 464, 510, 653, 657, 686
DpnII	GATC	7 cut(s)	51, 63, 462, 508, 651, 655, 684
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	2 cut(s)	20, 47
Eco130I	CCWWGG	1 cut(s)	734
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	2 cut(s)	483, 533
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	475
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	1 cut(s)	188
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	115, 118
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	2 cut(s)	115, 118
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	2 cut(s)	90, 321
GluI	GCNGC	2 cut(s)	115, 118
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	72, 120
HapII	CCGG	3 cut(s)	86, 92, 469
HhaI	GCGC	2 cut(s)	91, 322
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	2 cut(s)	89, 320
HinP1I	GCGC	2 cut(s)	89, 320
HinfI	GANTC	5 cut(s)	35, 80, 156, 400, 730
HpaII	CCGG	3 cut(s)	86, 92, 469
Hpy166II	GTNNAC	3 cut(s)	151, 181, 592
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	5 cut(s)	328, 404, 419, 580, 688
Hpy8I	GTNNAC	3 cut(s)	151, 181, 592
HpyAV	CCTTC	4 cut(s)	133, 499, 664, 709
HpyCH4III	ACNGT	2 cut(s)	268, 604
HpyCH4V	TGCA	3 cut(s)	181, 449, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	671
HpyF3I	CTNAG	2 cut(s)	616, 722
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	2 cut(s)	89, 320
KasI	GGCGCC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Kzo9I	GATC	7 cut(s)	51, 63, 462, 508, 651, 655, 684
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	735
MalI	GATC	7 cut(s)	53, 65, 464, 510, 653, 657, 686
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	7 cut(s)	51, 63, 462, 508, 651, 655, 684
MboII	GAAGA	7 cut(s)	61, 73, 121, 151, 181, 343, 760
MflI	RGATCY	2 cut(s)	63, 508
MhlI	GDGCHC	2 cut(s)	183, 475
MluCI	AATT	3 cut(s)	287, 414, 450
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	7 cut(s)	13, 21, 49, 219, 335, 533, 637
MreI	CGCCGGCG	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	2 cut(s)	371, 381
MspI	CCGG	3 cut(s)	86, 92, 469
MspR9I	CCNGG	2 cut(s)	470, 587
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	671
NaeI	GCCGGC	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	7 cut(s)	51, 63, 462, 508, 651, 655, 684
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	90
NmeAIII	GCCGAG	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 131
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	4 cut(s)	80, 156, 400, 730
PkrI	GCNGC	2 cut(s)	116, 119
PleI	GAGTC	1 cut(s)	43
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	63, 508
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	371, 381
SatI	GCNGC	2 cut(s)	115, 118
Sau3AI	GATC	7 cut(s)	51, 63, 462, 508, 651, 655, 684
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	470, 587
SduI	GDGCHC	2 cut(s)	183, 475
SetI	ASST	6 cut(s)	150, 240, 306, 327, 499, 720
SfcI	CTRYAG	1 cut(s)	434
SfoI	GGCGCC	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	360
Sse9I	AATT	3 cut(s)	287, 414, 450
SsiI	CCGC	4 cut(s)	5, 32, 114, 117
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	735
StyD4I	CCNGG	2 cut(s)	468, 585
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	2 cut(s)	268, 604
TaqI	TCGA	2 cut(s)	54, 654
TasI	AATT	3 cut(s)	287, 414, 450
TauI	GCSGC	2 cut(s)	117, 120
TfiI	GAWTC	4 cut(s)	80, 156, 400, 730
Tru1I	TTAA	2 cut(s)	371, 381
Tru9I	TTAA	2 cut(s)	371, 381
TscAI	CASTG	3 cut(s)	273, 351, 624
TspDTI	ATGAA	1 cut(s)	367
TspRI	CASTG	3 cut(s)	273, 351, 624
VneI	GTGCAC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XmaJI	CCTAGG	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.