Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003831

Physical Location & Seq

Genomic Coordinates Reverse (-)

19347239 .. 19348362

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCGGGACTCAGATTGGAAGGCAAGATCGTAATTATAACAGGCGGAGCCAGCGGGATTGGAGCCGACGCCGCTAGGCTGTTCACGGACCACGGAGCTAAGGTGGTTATAGTTGACGTACAAGAAGAACTAGGCCAAAACGTCGCAGTTTTGATCGGGAAAGACAAAGCTAGTTTTTACCGTTGCGATGTGACAAATGAGACGGAAGTCGAGGACGCAGTTAAGTTCACCGTCGAAAAACACGGAAAGCTAGACGTTCTGTTTAGCAACGCCGGAGTCTTGGAACCACTGGAAAGCTTCCTCGACTTTGACCTCGAACGGTTTGACCGCATAATGGCTGTTAACGTTCGCGGTGCAGCTGCGTTTATCAAACACGCGGCACGAGCCATGGTGGAGAAAGGCACGCGTGGCTCCATCGTTTGTACGACGAGCGTCTCGGCGGAGATCGGTGGGGGGCATCATGGTTACACGGCGTCTAAACACGGGCTTGTCGGCCTGATTAGATCGGCCTGTGGTGATTTGGGGAAGTATGGGATTAGAGTCAATGGAGTCGCACCGTACGCGGTGGCAACGCCAATGACTAGCCACGACGAGGTAACGGGAAAGCAGTTGGAGGATTATTTTGACGCCAAGGGAATTCTCAAGGGGATGGTGCTTAAAGCTAGCCACGTTGCACAAGTGGCTCTGTTCTTGGCTTCTGATGATTCGGCTTATATAAGTGGTCAGAATTTGGCGGTGGATGGTGGTTATACTGTCGTTAAGCCAAGCCGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0046872 GO:0046914 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

258

Amino Acids

27.26

Weight (kDa)

5.91

Isoelectric Point (pI)

15.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	9 - 196	1.1e-48	short chain dehydrogenase
KR	PF08659	11 - 158	2.6e-09	KR domain
adh_short_C2	PF13561	17 - 251	2.2e-64	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47120 AT2G47120 AT2G47130 AT2G47140 AT2G47150 AT3G29250 AT3G29250 AT3G29250 AT3G29260
fragaria_vesca	FvH4_1g26540
malus_domestica	MD09G1293400.v1.1 MD17G1280600.v1.1
prunus_persica	Prupe.3G004900_v2.0.a1
pyrus_communis	pycom17g27840
rosa_chinensis	RchiOBHm_Chr3g0486621
rosa_laevigata	RLG00000023072
rosa_multiflora	Rmu_co8313475.1_g000001 Rmu_sc0000261.1_g000001 Rmu_sc0001136.1_g000050
rosa_roxburghii	Rroxscaffold_6G00395740
rosa_rugosa	Rorug03G0226000.1 Rorug07G0192200 Rorug07G0192300 Rorug07G0192300 Rorug07G0192400.1 Rorug07G0192500
rosa_samantha	Rh3AG275600 Rh3BG310600 Rh3CG310000 Rh3DG306700 Rh7BG324700 Rh7DG330500
rosa_wichuraiana	Rw3G024560 Rw7G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AccII	CGCG	4 cut(s)	351, 377, 406, 563
AciI	CCGC	9 cut(s)	45, 54, 72, 328, 351, 377, 440, 563, 734
AclI	AACGTT	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	636, 727
AcyI	GRCGYC	3 cut(s)	69, 473, 627
AfaI	GTAC	3 cut(s)	120, 424, 560
AfiI	CCNNNNNNNGG	2 cut(s)	334, 592
AflIII	ACRYGT	1 cut(s)	404
AluBI	AGCT	6 cut(s)	98, 170, 250, 297, 359, 662
AluI	AGCT	6 cut(s)	98, 170, 250, 297, 359, 662
Alw26I	GTCTC	2 cut(s)	194, 439
AoxI	GGCC	3 cut(s)	133, 493, 507
ApeKI	GCWGC	2 cut(s)	356, 359
ApoI	RAATTY	2 cut(s)	636, 727
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	220, 527
AsuNHI	GCTAGC	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	346, 368
BccI	CCATC	3 cut(s)	422, 643, 734
BceAI	ACGGC	2 cut(s)	486, 753
BcoDI	GTCTC	2 cut(s)	194, 439
BfaI	CTAG	6 cut(s)	75, 131, 171, 251, 582, 663
BisI	GCNGC	4 cut(s)	72, 357, 360, 378
BlsI	GCNGC	4 cut(s)	73, 358, 361, 379
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	4 cut(s)	49, 64, 285, 412
BmsI	GCATC	1 cut(s)	466
BmtI	GCTAGC	1 cut(s)	666
BoxI	GACNNNNGTC	2 cut(s)	206, 431
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	626
BsaHI	GRCGYC	3 cut(s)	69, 473, 627
BsaJI	CCNNGG	3 cut(s)	91, 387, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 592
Bse1I	ACTGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	91, 387, 630
BseGI	GGATG	2 cut(s)	654, 745
BseLI	CCNNNNNNNGG	2 cut(s)	334, 592
BseMII	CTCAG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	346, 368
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	4 cut(s)	351, 377, 406, 563
BshFI	GGCC	3 cut(s)	135, 495, 509
BsiSI	CCGG	1 cut(s)	273
BsiWI	CGTACG	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	334, 592
BsmAI	GTCTC	2 cut(s)	194, 439
BsmBI	CGTCTC	2 cut(s)	194, 439
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	3 cut(s)	135, 495, 509
Bsp143I	GATC	4 cut(s)	27, 153, 444, 503
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	9 cut(s)	45, 54, 72, 328, 351, 377, 440, 563, 734
BspANI	GGCC	3 cut(s)	135, 495, 509
BspCNI	CTCAG	1 cut(s)	24
BspFNI	CGCG	4 cut(s)	351, 377, 406, 563
BspLI	GGNNCC	4 cut(s)	49, 64, 285, 412
BspOI	GCTAGC	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	3 cut(s)	91, 387, 630
BssMI	GATC	4 cut(s)	27, 153, 444, 503
BssNI	GRCGYC	3 cut(s)	69, 473, 627
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	387, 630
Bst2BI	CACGAG	1 cut(s)	381
Bst4CI	ACNGT	5 cut(s)	182, 232, 321, 558, 754
BstACI	GRCGYC	3 cut(s)	69, 473, 627
BstC8I	GCNNGC	3 cut(s)	52, 404, 664
BstDEI	CTNAG	2 cut(s)	11, 99
BstDSI	CCRYGG	2 cut(s)	91, 387
BstF5I	GGATG	2 cut(s)	654, 745
BstFNI	CGCG	4 cut(s)	351, 377, 406, 563
BstKTI	GATC	4 cut(s)	30, 156, 447, 506
BstMAI	GTCTC	2 cut(s)	194, 439
BstMBI	GATC	4 cut(s)	27, 153, 444, 503
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 71, 383, 408, 560, 680
BstPAI	GACNNNNGTC	2 cut(s)	206, 431
BstUI	CGCG	4 cut(s)	351, 377, 406, 563
BstV1I	GCAGC	2 cut(s)	346, 368
BsuRI	GGCC	3 cut(s)	135, 495, 509
BtgI	CCRYGG	2 cut(s)	91, 387
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	654, 745
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	3 cut(s)	52, 404, 664
Cfr13I	GGNCC	1 cut(s)	88
CseI	GACGC	5 cut(s)	77, 224, 421, 462, 635
Csp6I	GTAC	3 cut(s)	119, 423, 559
CviAII	CATG	2 cut(s)	388, 461
CviQI	GTAC	3 cut(s)	119, 423, 559
DdeI	CTNAG	2 cut(s)	11, 99
DpnI	GATC	4 cut(s)	29, 155, 446, 505
DpnII	GATC	4 cut(s)	27, 153, 444, 503
EciI	GGCGGA	2 cut(s)	60, 455
Eco130I	CCWWGG	2 cut(s)	387, 630
Eco47I	GGWCC	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	636
EcoT14I	CCWWGG	2 cut(s)	387, 630
ErhI	CCWWGG	2 cut(s)	387, 630
Esp3I	CGTCTC	2 cut(s)	194, 439
FaeI	CATG	2 cut(s)	391, 464
FaiI	YATR	9 cut(s)	38, 110, 332, 389, 462, 531, 714, 716, 750
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	387, 460
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	72, 357, 360, 378
FokI	GGATG	2 cut(s)	661, 752
Fsp4HI	GCNGC	4 cut(s)	72, 357, 360, 378
FspBI	CTAG	6 cut(s)	75, 131, 171, 251, 582, 663
GluI	GCNGC	4 cut(s)	72, 357, 360, 378
HaeIII	GGCC	3 cut(s)	135, 495, 509
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	5 cut(s)	77, 224, 421, 462, 635
Hin1I	GRCGYC	3 cut(s)	69, 473, 627
Hin1II	CATG	2 cut(s)	391, 464
HincII	GTYRAC	2 cut(s)	115, 343
HindII	GTYRAC	2 cut(s)	115, 343
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	5 cut(s)	9, 276, 540, 549, 704
HpaI	GTTAAC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	220, 527
Hpy166II	GTNNAC	4 cut(s)	84, 115, 228, 343
Hpy188I	TCNGA	3 cut(s)	14, 700, 726
Hpy188III	TCNNGA	2 cut(s)	6, 157
Hpy8I	GTNNAC	4 cut(s)	84, 115, 228, 343
Hpy99I	CGWCG	5 cut(s)	71, 146, 236, 430, 593
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	5 cut(s)	182, 232, 321, 558, 754
HpyCH4IV	ACGT	5 cut(s)	117, 141, 255, 345, 669
HpyCH4V	TGCA	2 cut(s)	356, 674
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 71, 383, 408, 560, 680
HpyF3I	CTNAG	2 cut(s)	11, 99
HpySE526I	ACGT	5 cut(s)	117, 141, 255, 345, 669
Hsp92I	GRCGYC	3 cut(s)	69, 473, 627
Hsp92II	CATG	2 cut(s)	391, 464
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	27, 153, 444, 503
LmnI	GCTCC	4 cut(s)	47, 62, 95, 416
LpnPI	CCDG	6 cut(s)	27, 64, 275, 286, 509, 523
Lsp1109I	GCAGC	2 cut(s)	346, 368
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	6 cut(s)	75, 131, 171, 251, 582, 663
MaeII	ACGT	5 cut(s)	117, 141, 255, 345, 669
MaeIII	GTNAC	3 cut(s)	190, 464, 595
MalI	GATC	4 cut(s)	29, 155, 446, 505
MboI	GATC	4 cut(s)	27, 153, 444, 503
MboII	GAAGA	1 cut(s)	137
MluCI	AATT	3 cut(s)	33, 636, 727
MluI	ACGCGT	1 cut(s)	404
MlyI	GAGTC	4 cut(s)	3, 285, 549, 558
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	5 cut(s)	205, 311, 323, 586, 607
MseI	TTAA	5 cut(s)	222, 342, 657, 759, 775
MspA1I	CMGCKG	2 cut(s)	54, 359
MspI	CCGG	1 cut(s)	273
MvnI	CGCG	4 cut(s)	351, 377, 406, 563
MwoI	GCNNNNNNNGC	6 cut(s)	51, 71, 383, 408, 560, 680
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	4 cut(s)	27, 153, 444, 503
NheI	GCTAGC	1 cut(s)	662
NlaIII	CATG	2 cut(s)	391, 464
NlaIV	GGNNCC	4 cut(s)	49, 64, 285, 412
NmeAIII	GCCGAG	1 cut(s)	416
NmuCI	GTSAC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	704
Pfl23II	CGTACG	1 cut(s)	558
PkrI	GCNGC	4 cut(s)	73, 358, 361, 379
PleI	GAGTC	4 cut(s)	3, 284, 548, 557
PpsI	GAGTC	4 cut(s)	3, 284, 548, 557
PshAI	GACNNNNGTC	2 cut(s)	206, 431
PsiI	TTATAA	1 cut(s)	38
Psp1406I	AACGTT	1 cut(s)	345
PspLI	CGTACG	1 cut(s)	558
PspN4I	GGNNCC	4 cut(s)	49, 64, 285, 412
PspPI	GGNCC	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	3 cut(s)	120, 424, 560
RsaNI	GTAC	3 cut(s)	119, 423, 559
SaqAI	TTAA	5 cut(s)	222, 342, 657, 759, 775
SatI	GCNGC	4 cut(s)	72, 357, 360, 378
Sau3AI	GATC	4 cut(s)	27, 153, 444, 503
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	4 cut(s)	3, 285, 549, 558
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	3 cut(s)	33, 636, 727
SsiI	CCGC	9 cut(s)	45, 54, 72, 328, 351, 377, 440, 563, 734
SspMI	CTAG	6 cut(s)	75, 131, 171, 251, 582, 663
StyI	CCWWGG	2 cut(s)	387, 630
TaaI	ACNGT	5 cut(s)	182, 232, 321, 558, 754
TaiI	ACGT	5 cut(s)	120, 144, 258, 348, 672
TaqI	TCGA	4 cut(s)	210, 234, 303, 315
TasI	AATT	3 cut(s)	33, 636, 727
TauI	GCSGC	2 cut(s)	74, 380
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	5 cut(s)	222, 342, 657, 759, 775
Tru9I	TTAA	5 cut(s)	222, 342, 657, 759, 775
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	356, 359
Tsp45I	GTSAC	1 cut(s)	190
TspGWI	ACGGA	4 cut(s)	101, 108, 218, 258
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	2 cut(s)	636, 727
XspI	CTAG	6 cut(s)	75, 131, 171, 251, 582, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.